RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 NISCHQ9Y2I1 1504 aa23.89■■□□□ 1.41
UPF1-213ENST00000601981 CCDC180Q9P1Z9 1646 aa21.25■□□□□ 0.99
UPF1-213ENST00000601981 ABCC9O60706 1549 aa20.47■□□□□ 0.87
UPF1-213ENST00000601981 ZCCHC6Q5VYS8 1495 aaKnown RBP19.94■□□□□ 0.78
UPF1-213ENST00000601981 NACADO15069 1562 aa19.89■□□□□ 0.77
UPF1-213ENST00000601981 RB1CC1Q8TDY2 1594 aa19.87■□□□□ 0.77
UPF1-213ENST00000601981 DCAF8L2P0C7V8 631 aa19.86■□□□□ 0.77
UPF1-213ENST00000601981 MYO15BQ96JP2 1530 aa19.82■□□□□ 0.76
UPF1-213ENST00000601981 DCAF1Q9Y4B6 1507 aa19.81■□□□□ 0.76
UPF1-213ENST00000601981 UNC13AQ9UPW8 1703 aa19.43■□□□□ 0.7
UPF1-213ENST00000601981 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
UPF1-213ENST00000601981 DNAJC5BQ9UF47 199 aa19.22■□□□□ 0.67
UPF1-213ENST00000601981 BICRAQ9NZM4 1560 aa19.17■□□□□ 0.66
UPF1-213ENST00000601981 PABPN1Q86U42 306 aaKnown RBP eCLIP19.12■□□□□ 0.65
UPF1-213ENST00000601981 SHROOM4Q9ULL8 1493 aa19.1■□□□□ 0.65
UPF1-213ENST00000601981 EIF4G1Q04637 1599 aaKnown RBP18.69■□□□□ 0.58
UPF1-213ENST00000601981 CC2D2AQ9P2K1 1620 aa18.56■□□□□ 0.56
UPF1-213ENST00000601981 BAZ1AQ9NRL2 1556 aaPredicted RBP18.55■□□□□ 0.56
UPF1-213ENST00000601981 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
UPF1-213ENST00000601981 CECR2Q9BXF3 1484 aa18.52■□□□□ 0.56
UPF1-213ENST00000601981 SMARCA2P51531 1590 aa18.38■□□□□ 0.53
UPF1-213ENST00000601981 MROH2BQ7Z745 1585 aa18.38■□□□□ 0.53
UPF1-213ENST00000601981 PEG3Q9GZU2 1588 aa18.34■□□□□ 0.53
UPF1-213ENST00000601981 ATAD2BQ9ULI0 1458 aa18.32■□□□□ 0.52
UPF1-213ENST00000601981 NCAPD3P42695 1498 aa18.28■□□□□ 0.52
UPF1-213ENST00000601981 HMGXB3Q12766 1538 aa18.28■□□□□ 0.52
UPF1-213ENST00000601981 RSF1Q96T23 1441 aaPredicted RBP18.24■□□□□ 0.51
UPF1-213ENST00000601981 BAZ1BQ9UIG0 1483 aaKnown RBP18.24■□□□□ 0.51
UPF1-213ENST00000601981 WIZO95785 1651 aa18.24■□□□□ 0.51
UPF1-213ENST00000601981 TOP2AP11388 1531 aaKnown RBP18.08■□□□□ 0.48
UPF1-213ENST00000601981 SUPT5HO00267 1087 aaKnown RBP17.95■□□□□ 0.46
UPF1-213ENST00000601981 LAMC3Q9Y6N6 1575 aa17.84■□□□□ 0.45
UPF1-213ENST00000601981 CCDC88BA6NC98 1476 aa17.81■□□□□ 0.44
UPF1-213ENST00000601981 CADPSQ9ULU8 1353 aa17.77■□□□□ 0.43
UPF1-213ENST00000601981 DNAJC5Q9H3Z4 198 aa17.76■□□□□ 0.43
UPF1-213ENST00000601981 NESP48681 1621 aa17.75■□□□□ 0.43
UPF1-213ENST00000601981 PRDM2Q13029 1718 aa17.74■□□□□ 0.43
UPF1-213ENST00000601981 CFTRP13569 1480 aa17.7■□□□□ 0.42
UPF1-213ENST00000601981 ERCC6Q03468 1493 aa17.7■□□□□ 0.42
UPF1-213ENST00000601981 PDS5BQ9NTI5 1447 aa17.7■□□□□ 0.42
UPF1-213ENST00000601981 KIF21AQ7Z4S6 1674 aa17.64■□□□□ 0.42
UPF1-213ENST00000601981 FANCD2Q9BXW9 1451 aa17.58■□□□□ 0.41
UPF1-213ENST00000601981 CEP164Q9UPV0 1460 aa17.57■□□□□ 0.4
UPF1-213ENST00000601981 CUX2O14529 1486 aa17.56■□□□□ 0.4
UPF1-213ENST00000601981 THOC2Q8NI27 1593 aaKnown RBP17.5■□□□□ 0.39
UPF1-213ENST00000601981 MRC2Q9UBG0 1479 aa17.49■□□□□ 0.39
UPF1-213ENST00000601981 WDR62O43379 1518 aa17.42■□□□□ 0.38
UPF1-213ENST00000601981 ABCC8Q09428 1581 aa17.4■□□□□ 0.38
UPF1-213ENST00000601981 URB2Q14146 1524 aaKnown RBP17.36■□□□□ 0.37
UPF1-213ENST00000601981 DNMBPQ6XZF7 1577 aa17.36■□□□□ 0.37
UPF1-213ENST00000601981 TOPBP1Q92547 1522 aa17.32■□□□□ 0.36
UPF1-213ENST00000601981 WRNQ14191 1432 aaPredicted RBP eCLIP17.24■□□□□ 0.357e-10■■■■■ 33.4
UPF1-213ENST00000601981 CUX1P39880 1505 aa17.24■□□□□ 0.35
UPF1-213ENST00000601981 BIVM-ERCC5R4GMW8 1640 aa17.22■□□□□ 0.35
UPF1-213ENST00000601981 TOP2BQ02880 1626 aa17.21■□□□□ 0.35
UPF1-213ENST00000601981 IFT140Q96RY7 1462 aa17.19■□□□□ 0.34
UPF1-213ENST00000601981 SYNJ1O43426 1573 aa17.18■□□□□ 0.34
UPF1-213ENST00000601981 POLA1P09884 1462 aaPredicted RBP17.18■□□□□ 0.34
UPF1-213ENST00000601981 FGD5Q6ZNL6 1462 aa17.18■□□□□ 0.34
UPF1-213ENST00000601981 SOGA1O94964 1423 aa17.12■□□□□ 0.33
UPF1-213ENST00000601981 TARBP1Q13395 1621 aaKnown RBP17.11■□□□□ 0.33
UPF1-213ENST00000601981 WDR97A6NE52 1622 aa17.09■□□□□ 0.33
UPF1-213ENST00000601981 RAD54L2Q9Y4B4 1467 aa17.07■□□□□ 0.32
UPF1-213ENST00000601981 EIF4G3O43432 1585 aaKnown RBP17.04■□□□□ 0.32
UPF1-213ENST00000601981 ABCA10Q8WWZ4 1543 aa17.03■□□□□ 0.32
UPF1-213ENST00000601981 ZNF608Q9ULD9 1512 aaPredicted RBP17.01■□□□□ 0.31
UPF1-213ENST00000601981 TRIM41Q8WV44 630 aa16.98■□□□□ 0.31
UPF1-213ENST00000601981 TDRD9Q8NDG6 1382 aaKnown RBP16.96■□□□□ 0.31
UPF1-213ENST00000601981 PBRM1Q86U86 1689 aa16.96■□□□□ 0.31
UPF1-213ENST00000601981 ABCA5Q8WWZ7 1642 aa16.96■□□□□ 0.3
UPF1-213ENST00000601981 AQRO60306 1485 aaKnown RBP eCLIP16.95■□□□□ 0.31e-8■■■■■ 54.6
UPF1-213ENST00000601981 GAPVD1Q14C86 1478 aa16.94■□□□□ 0.3
UPF1-213ENST00000601981 GRIN2BQ13224 1484 aa16.92■□□□□ 0.3
UPF1-213ENST00000601981 KIF27Q86VH2 1401 aa16.89■□□□□ 0.29
UPF1-213ENST00000601981 MAGI1Q96QZ7 1491 aaPredicted RBP16.87■□□□□ 0.29
UPF1-213ENST00000601981 ERICH3Q5RHP9 1530 aa16.86■□□□□ 0.29
UPF1-213ENST00000601981 SNAPC4Q5SXM2 1469 aa16.85■□□□□ 0.29
UPF1-213ENST00000601981 CHIC1Q5VXU3 224 aa16.84■□□□□ 0.29
UPF1-213ENST00000601981 CHD1O14646 1710 aa16.82■□□□□ 0.28
UPF1-213ENST00000601981 OSCARQ8IYS5 282 aa16.8■□□□□ 0.28
UPF1-213ENST00000601981 CUL7Q14999 1698 aa16.8■□□□□ 0.28
UPF1-213ENST00000601981 ADAMTS12P58397 1594 aa16.79■□□□□ 0.28
UPF1-213ENST00000601981 SYNJ2O15056 1496 aa16.79■□□□□ 0.28
UPF1-213ENST00000601981 CHMP7Q8WUX9 453 aaPredicted RBP16.76■□□□□ 0.27
UPF1-213ENST00000601981 FHAD1B1AJZ9 1412 aa16.76■□□□□ 0.27
UPF1-213ENST00000601981 FBLN2P98095 1184 aa16.75■□□□□ 0.27
UPF1-213ENST00000601981 EEA1Q15075 1411 aa16.74■□□□□ 0.27
UPF1-213ENST00000601981 IGF1RP08069 1367 aa16.71■□□□□ 0.27
UPF1-213ENST00000601981 GRIN2AQ12879 1464 aa16.69■□□□□ 0.26
UPF1-213ENST00000601981 RUSC2Q8N2Y8 1516 aa16.69■□□□□ 0.26
UPF1-213ENST00000601981 CARMIL1Q5VZK9 1371 aa16.66■□□□□ 0.26
UPF1-213ENST00000601981 RAPGEF2Q9Y4G8 1499 aa16.61■□□□□ 0.25
UPF1-213ENST00000601981 CSRNP3Q8WYN3 585 aa16.61■□□□□ 0.25
UPF1-213ENST00000601981 NUP160Q12769 1436 aa16.59■□□□□ 0.25
UPF1-213ENST00000601981 CEP170Q5SW79 1584 aa16.59■□□□□ 0.25
UPF1-213ENST00000601981 FAM9AQ8IZU1 332 aaPredicted RBP16.58■□□□□ 0.24
UPF1-213ENST00000601981 CLASP1Q7Z460 1538 aa16.58■□□□□ 0.24
UPF1-213ENST00000601981 PRXQ9BXM0 1461 aa16.56■□□□□ 0.24
UPF1-213ENST00000601981 KIF21BO75037 1637 aa16.54■□□□□ 0.24
UPF1-213ENST00000601981 CTTNBP2Q8WZ74 1663 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 118.8 ms