RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 RPS6KA4O75676 772 aa25.14■■□□□ 1.62
UPF1-209ENST00000600310 LRP5O75197 1615 aa25.13■■□□□ 1.61
UPF1-209ENST00000600310 RTCBQ9Y3I0 505 aaKnown RBP25.13■■□□□ 1.61
UPF1-209ENST00000600310 PNPLA7Q6ZV29 1317 aa25.12■■□□□ 1.61
UPF1-209ENST00000600310 KRT24Q2M2I5 525 aa25.12■■□□□ 1.61
UPF1-209ENST00000600310 AMIGO3Q86WK7 504 aa25.12■■□□□ 1.61
UPF1-209ENST00000600310 FLAD1Q8NFF5 587 aa25.12■■□□□ 1.61
UPF1-209ENST00000600310 SPINK5Q9NQ38 1064 aaPredicted RBP25.12■■□□□ 1.61
UPF1-209ENST00000600310 SSFA2P28290 1259 aa25.11■■□□□ 1.61
UPF1-209ENST00000600310 TSR2Q969E8 191 aaKnown RBP25.11■■□□□ 1.61
UPF1-209ENST00000600310 ZBTB1Q9Y2K1 713 aa25.11■■□□□ 1.61
UPF1-209ENST00000600310 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.1■■□□□ 1.61
UPF1-209ENST00000600310 A1BGP04217 495 aa25.1■■□□□ 1.61
UPF1-209ENST00000600310 HNRNPUQ00839 825 aaKnown RBP eCLIP25.1■■□□□ 1.61
UPF1-209ENST00000600310 GOLGA2Q08379 1002 aa25.1■■□□□ 1.61
UPF1-209ENST00000600310 HOXB7P09629 217 aa25.09■■□□□ 1.61
UPF1-209ENST00000600310 COL23A1Q86Y22 540 aaPredicted RBP25.09■■□□□ 1.61
UPF1-209ENST00000600310 MYH16Q9H6N6 1097 aa25.09■■□□□ 1.61
UPF1-209ENST00000600310 MYH14Q7Z406 1995 aaKnown RBP25.09■■□□□ 1.61
UPF1-209ENST00000600310 FANCIQ9NVI1 1328 aa25.09■■□□□ 1.61
UPF1-209ENST00000600310 PHF14O94880 888 aa25.08■■□□□ 1.61
UPF1-209ENST00000600310 ADRA2BP18089 450 aa25.08■■□□□ 1.61
UPF1-209ENST00000600310 DUSP27Q5VZP5 1158 aa25.08■■□□□ 1.61
UPF1-209ENST00000600310 SMIM5Q71RC9 77 aa25.08■■□□□ 1.61
UPF1-209ENST00000600310 PDGFDQ9GZP0 370 aaPredicted RBP25.08■■□□□ 1.61
UPF1-209ENST00000600310 SOS1Q07889 1333 aaPredicted RBP25.08■■□□□ 1.6
UPF1-209ENST00000600310 CANXP27824 592 aaKnown RBP25.07■■□□□ 1.6
UPF1-209ENST00000600310 TRAPPC3LQ5T215 181 aa25.07■■□□□ 1.6
UPF1-209ENST00000600310 QSER1Q2KHR3 1735 aa25.06■■□□□ 1.6
UPF1-209ENST00000600310 E9PSI1 815 aa25.06■■□□□ 1.6
UPF1-209ENST00000600310 C8orf58Q8NAV2 365 aa25.06■■□□□ 1.6
UPF1-209ENST00000600310 UBR3Q6ZT12 1888 aa25.06■■□□□ 1.6
UPF1-209ENST00000600310 IL6STP40189 918 aaPredicted RBP25.05■■□□□ 1.6
UPF1-209ENST00000600310 EIF5P55010 431 aaKnown RBP25.05■■□□□ 1.6
UPF1-209ENST00000600310 ARHGEF1Q92888 912 aaKnown RBP25.05■■□□□ 1.6
UPF1-209ENST00000600310 TUBGCP6Q96RT7 1819 aa25.05■■□□□ 1.6
UPF1-209ENST00000600310 NBPF26B4DH59 902 aa25.04■■□□□ 1.6
UPF1-209ENST00000600310 EIF2S2P20042 333 aaKnown RBP25.04■■□□□ 1.6
UPF1-209ENST00000600310 SLFN5Q08AF3 891 aa25.04■■□□□ 1.6
UPF1-209ENST00000600310 NBPF10Q6P3W6 841 aaKnown RBP25.04■■□□□ 1.6
UPF1-209ENST00000600310 NBPF15Q8N660 670 aa25.04■■□□□ 1.6
UPF1-209ENST00000600310 SLC16A10Q8TF71 515 aa25.04■■□□□ 1.6
UPF1-209ENST00000600310 ERBB4Q15303 1308 aa25.04■■□□□ 1.6
UPF1-209ENST00000600310 ELL2O00472 640 aaPredicted RBP25.03■■□□□ 1.6
UPF1-209ENST00000600310 LAMB4A4D0S4 1761 aa25.03■■□□□ 1.6
UPF1-209ENST00000600310 MSH5O43196 834 aa25.02■■□□□ 1.6
UPF1-209ENST00000600310 PIP4K2AP48426 406 aaPredicted RBP25.02■■□□□ 1.6
UPF1-209ENST00000600310 TSPYL6Q8N831 410 aa25.02■■□□□ 1.6
UPF1-209ENST00000600310 CDCA7LQ96GN5 454 aa25.02■■□□□ 1.6
UPF1-209ENST00000600310 CASZ1Q86V15 1759 aa25.02■■□□□ 1.6
UPF1-209ENST00000600310 RFC4P35249 363 aa25.01■■□□□ 1.59
UPF1-209ENST00000600310 HDGFL1Q5TGJ6 251 aa25.01■■□□□ 1.59
UPF1-209ENST00000600310 COL15A1P39059 1388 aa25.01■■□□□ 1.59
UPF1-209ENST00000600310 A0A087WZG4 1122 aa25■■□□□ 1.59
UPF1-209ENST00000600310 EXOSC9Q06265 439 aaKnown RBP25■■□□□ 1.59
UPF1-209ENST00000600310 TRMT2AQ8IZ69 625 aaKnown RBP25■■□□□ 1.59
UPF1-209ENST00000600310 PDIA6Q15084 440 aa24.99■■□□□ 1.59
UPF1-209ENST00000600310 TWISTNBQ3B726 338 aaPredicted RBP24.99■■□□□ 1.59
UPF1-209ENST00000600310 ZBED9Q6R2W3 1325 aa24.99■■□□□ 1.59
UPF1-209ENST00000600310 NECTIN2Q92692 538 aa24.99■■□□□ 1.59
UPF1-209ENST00000600310 MTFR1LQ9H019 292 aa24.99■■□□□ 1.59
UPF1-209ENST00000600310 ZBTB7AO95365 584 aa24.98■■□□□ 1.59
UPF1-209ENST00000600310 NPM2Q86SE8 214 aaKnown RBP24.98■■□□□ 1.59
UPF1-209ENST00000600310 CHMP4AQ9BY43 222 aa24.98■■□□□ 1.59
UPF1-209ENST00000600310 ZNF330Q9Y3S2 320 aaPredicted RBP24.98■■□□□ 1.59
UPF1-209ENST00000600310 USP42Q9H9J4 1324 aaKnown RBP24.97■■□□□ 1.59
UPF1-209ENST00000600310 DDX21Q9NR30 783 aaKnown RBP eCLIP24.97■■□□□ 1.59
UPF1-209ENST00000600310 VAMP4O75379 141 aa24.96■■□□□ 1.59
UPF1-209ENST00000600310 MYL6BP14649 208 aa24.96■■□□□ 1.59
UPF1-209ENST00000600310 LRP10Q7Z4F1 713 aa24.96■■□□□ 1.59
UPF1-209ENST00000600310 NARFQ9UHQ1 456 aa24.96■■□□□ 1.59
UPF1-209ENST00000600310 PROSER3Q2NL68 480 aa24.95■■□□□ 1.58
UPF1-209ENST00000600310 CCDC30Q5VVM6 783 aa24.95■■□□□ 1.58
UPF1-209ENST00000600310 CHPF2Q9P2E5 772 aa24.95■■□□□ 1.58
UPF1-209ENST00000600310 DBF4Q9UBU7 674 aaPredicted RBP24.95■■□□□ 1.58
UPF1-209ENST00000600310 SRP68Q9UHB9 627 aaKnown RBP24.95■■□□□ 1.58
UPF1-209ENST00000600310 ZPR1O75312 459 aa24.94■■□□□ 1.58
UPF1-209ENST00000600310 DZIP3Q86Y13 1208 aaKnown RBP24.94■■□□□ 1.58
UPF1-209ENST00000600310 SPON1Q9HCB6 807 aa24.94■■□□□ 1.58
UPF1-209ENST00000600310 ATF5Q9Y2D1 282 aaPredicted RBP24.94■■□□□ 1.58
UPF1-209ENST00000600310 ANXA1P04083 346 aa24.93■■□□□ 1.58
UPF1-209ENST00000600310 GYS1P13807 737 aa24.93■■□□□ 1.58
UPF1-209ENST00000600310 TBC1D2BQ9UPU7 963 aa24.93■■□□□ 1.58
UPF1-209ENST00000600310 USPL1Q5W0Q7 1092 aa24.92■■□□□ 1.58
UPF1-209ENST00000600310 NLGN1Q8N2Q7 840 aa24.92■■□□□ 1.58
UPF1-209ENST00000600310 CAMTA2O94983 1202 aa24.91■■□□□ 1.58
UPF1-209ENST00000600310 MSL1Q68DK7 614 aa24.91■■□□□ 1.58
UPF1-209ENST00000600310 ARXQ96QS3 562 aa24.91■■□□□ 1.58
UPF1-209ENST00000600310 C4AP0C0L4 1744 aa24.91■■□□□ 1.58
UPF1-209ENST00000600310 SGIP1Q9BQI5 828 aa24.9■■□□□ 1.58
UPF1-209ENST00000600310 BCL2L12Q9HB09 334 aa24.9■■□□□ 1.58
UPF1-209ENST00000600310 HYPKQ9NX55 129 aa24.9■■□□□ 1.58
UPF1-209ENST00000600310 PTGER2P43116 358 aa24.89■■□□□ 1.58
UPF1-209ENST00000600310 RGL2O15211 777 aa24.88■■□□□ 1.57
UPF1-209ENST00000600310 FKBP8Q14318 412 aa24.88■■□□□ 1.57
UPF1-209ENST00000600310 TTLL7Q6ZT98 887 aa24.88■■□□□ 1.57
UPF1-209ENST00000600310 COPS6Q7L5N1 327 aa24.88■■□□□ 1.57
UPF1-209ENST00000600310 STK31Q9BXU1 1019 aa24.88■■□□□ 1.57
UPF1-209ENST00000600310 KIF6Q6ZMV9 814 aa24.87■■□□□ 1.57
UPF1-209ENST00000600310 XAGE3Q8WTP9 111 aa24.87■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms