RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 KRT24Q2M2I5 525 aa19.53■□□□□ 0.72
TRIM28-207ENST00000597136 CNTNAP4Q9C0A0 1308 aa19.53■□□□□ 0.72
TRIM28-207ENST00000597136 PHF14O94880 888 aa19.53■□□□□ 0.72
TRIM28-207ENST00000597136 CFAP44Q96MT7 982 aa19.53■□□□□ 0.72
TRIM28-207ENST00000597136 BABAM1Q9NWV8 329 aa19.53■□□□□ 0.72
TRIM28-207ENST00000597136 A1BGP04217 495 aa19.52■□□□□ 0.71
TRIM28-207ENST00000597136 SNRPA1P09661 255 aaKnown RBP19.52■□□□□ 0.71
TRIM28-207ENST00000597136 MBIPQ9NS73 344 aa19.52■□□□□ 0.71
TRIM28-207ENST00000597136 COL24A1Q17RW2 1714 aa19.51■□□□□ 0.71
TRIM28-207ENST00000597136 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.51■□□□□ 0.71
TRIM28-207ENST00000597136 GIGYF1O75420 1035 aaPredicted RBP19.51■□□□□ 0.71
TRIM28-207ENST00000597136 CCDC87Q9NVE4 849 aa19.51■□□□□ 0.71
TRIM28-207ENST00000597136 MSH5O43196 834 aa19.5■□□□□ 0.71
TRIM28-207ENST00000597136 RPS6KA4O75676 772 aa19.5■□□□□ 0.71
TRIM28-207ENST00000597136 ZBTB7AO95365 584 aa19.5■□□□□ 0.71
TRIM28-207ENST00000597136 PIP4K2AP48426 406 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-207ENST00000597136 TEX13AQ9BXU3 409 aaPredicted RBP19.5■□□□□ 0.71
TRIM28-207ENST00000597136 IFT57Q9NWB7 429 aa19.5■□□□□ 0.71
TRIM28-207ENST00000597136 ZBTB1Q9Y2K1 713 aa19.5■□□□□ 0.71
TRIM28-207ENST00000597136 HMGB2P26583 209 aaKnown RBP19.49■□□□□ 0.71
TRIM28-207ENST00000597136 CANXP27824 592 aaKnown RBP19.49■□□□□ 0.71
TRIM28-207ENST00000597136 GNAI1P63096 354 aa19.49■□□□□ 0.71
TRIM28-207ENST00000597136 SPINK5Q9NQ38 1064 aaPredicted RBP19.49■□□□□ 0.71
TRIM28-207ENST00000597136 RTCBQ9Y3I0 505 aaKnown RBP19.49■□□□□ 0.71
TRIM28-207ENST00000597136 STARD3NLO95772 234 aa19.49■□□□□ 0.71
TRIM28-207ENST00000597136 WDR63Q8IWG1 891 aa19.49■□□□□ 0.71
TRIM28-207ENST00000597136 TSR2Q969E8 191 aaKnown RBP19.49■□□□□ 0.71
TRIM28-207ENST00000597136 CALD1Q05682 793 aaKnown RBP19.48■□□□□ 0.71
TRIM28-207ENST00000597136 ARHGEF1Q92888 912 aaKnown RBP19.48■□□□□ 0.71
TRIM28-207ENST00000597136 ATF5Q9Y2D1 282 aaPredicted RBP19.48■□□□□ 0.71
TRIM28-207ENST00000597136 SSFA2P28290 1259 aa19.47■□□□□ 0.71
TRIM28-207ENST00000597136 GOLGA2Q08379 1002 aa19.47■□□□□ 0.71
TRIM28-207ENST00000597136 TRAPPC3LQ5T215 181 aa19.47■□□□□ 0.71
TRIM28-207ENST00000597136 CACNA1FO60840 1977 aa19.46■□□□□ 0.71
TRIM28-207ENST00000597136 NUP98P52948 1817 aa19.46■□□□□ 0.71
TRIM28-207ENST00000597136 NBPF26B4DH59 902 aa19.45■□□□□ 0.7
TRIM28-207ENST00000597136 NBPF10Q6P3W6 841 aaKnown RBP19.45■□□□□ 0.7
TRIM28-207ENST00000597136 NBPF15Q8N660 670 aa19.45■□□□□ 0.7
TRIM28-207ENST00000597136 FLAD1Q8NFF5 587 aa19.45■□□□□ 0.7
TRIM28-207ENST00000597136 CDCA7LQ96GN5 454 aa19.45■□□□□ 0.7
TRIM28-207ENST00000597136 SOS1Q07889 1333 aaPredicted RBP19.45■□□□□ 0.7
TRIM28-207ENST00000597136 ELL2O00472 640 aaPredicted RBP19.44■□□□□ 0.7
TRIM28-207ENST00000597136 EIF2S2P20042 333 aaKnown RBP19.44■□□□□ 0.7
TRIM28-207ENST00000597136 C8orf58Q8NAV2 365 aa19.44■□□□□ 0.7
TRIM28-207ENST00000597136 NECTIN2Q92692 538 aa19.44■□□□□ 0.7
TRIM28-207ENST00000597136 IL16Q14005 1332 aa19.44■□□□□ 0.7
TRIM28-207ENST00000597136 EIF5P55010 431 aaKnown RBP19.44■□□□□ 0.7
TRIM28-207ENST00000597136 MSL1Q68DK7 614 aa19.44■□□□□ 0.7
TRIM28-207ENST00000597136 SRP68Q9UHB9 627 aaKnown RBP19.43■□□□□ 0.7
TRIM28-207ENST00000597136 ZNF330Q9Y3S2 320 aaPredicted RBP19.43■□□□□ 0.7
TRIM28-207ENST00000597136 SLFN5Q08AF3 891 aa19.42■□□□□ 0.7
TRIM28-207ENST00000597136 DUSP27Q5VZP5 1158 aa19.42■□□□□ 0.7
TRIM28-207ENST00000597136 TSPYL6Q8N831 410 aa19.42■□□□□ 0.7
TRIM28-207ENST00000597136 SLC16A10Q8TF71 515 aa19.42■□□□□ 0.7
TRIM28-207ENST00000597136 LRP5O75197 1615 aa19.42■□□□□ 0.7
TRIM28-207ENST00000597136 E9PSI1 815 aa19.41■□□□□ 0.7
TRIM28-207ENST00000597136 RFC4P35249 363 aa19.41■□□□□ 0.7
TRIM28-207ENST00000597136 MTFR1LQ9H019 292 aa19.41■□□□□ 0.7
TRIM28-207ENST00000597136 SPON1Q9HCB6 807 aa19.41■□□□□ 0.7
TRIM28-207ENST00000597136 COL15A1P39059 1388 aa19.41■□□□□ 0.7
TRIM28-207ENST00000597136 BCORQ6W2J9 1755 aa19.41■□□□□ 0.7
TRIM28-207ENST00000597136 AFDNP55196 1824 aaKnown RBP19.41■□□□□ 0.7
TRIM28-207ENST00000597136 ANXA1P04083 346 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 ADRA2BP18089 450 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 IL6STP40189 918 aaPredicted RBP19.4■□□□□ 0.7
TRIM28-207ENST00000597136 PTGER2P43116 358 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 TRMT2AQ8IZ69 625 aaKnown RBP19.4■□□□□ 0.7
TRIM28-207ENST00000597136 FANCIQ9NVI1 1328 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 TBC1D2BQ9UPU7 963 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 MYL6BP14649 208 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 PDIA6Q15084 440 aa19.4■□□□□ 0.7
TRIM28-207ENST00000597136 GYS1P13807 737 aa19.39■□□□□ 0.69
TRIM28-207ENST00000597136 PROSER3Q2NL68 480 aa19.39■□□□□ 0.69
TRIM28-207ENST00000597136 SGIP1Q9BQI5 828 aa19.39■□□□□ 0.69
TRIM28-207ENST00000597136 USPL1Q5W0Q7 1092 aa19.38■□□□□ 0.69
TRIM28-207ENST00000597136 ARXQ96QS3 562 aa19.38■□□□□ 0.69
TRIM28-207ENST00000597136 SCN7AQ01118 1682 aa19.37■□□□□ 0.69
TRIM28-207ENST00000597136 USP42Q9H9J4 1324 aaKnown RBP19.37■□□□□ 0.69
TRIM28-207ENST00000597136 MYH16Q9H6N6 1097 aa19.37■□□□□ 0.69
TRIM28-207ENST00000597136 NARFQ9UHQ1 456 aa19.37■□□□□ 0.69
TRIM28-207ENST00000597136 EXOSC9Q06265 439 aaKnown RBP19.36■□□□□ 0.69
TRIM28-207ENST00000597136 FKBP8Q14318 412 aa19.36■□□□□ 0.69
TRIM28-207ENST00000597136 BCL2L12Q9HB09 334 aa19.36■□□□□ 0.69
TRIM28-207ENST00000597136 ZPR1O75312 459 aa19.36■□□□□ 0.69
TRIM28-207ENST00000597136 HDGFL1Q5TGJ6 251 aa19.36■□□□□ 0.69
TRIM28-207ENST00000597136 LRP10Q7Z4F1 713 aa19.36■□□□□ 0.69
TRIM28-207ENST00000597136 CENPBP07199 599 aaPredicted RBP19.35■□□□□ 0.69
TRIM28-207ENST00000597136 HOXB7P09629 217 aa19.35■□□□□ 0.69
TRIM28-207ENST00000597136 TTLL7Q6ZT98 887 aa19.35■□□□□ 0.69
TRIM28-207ENST00000597136 DZIP3Q86Y13 1208 aaKnown RBP19.35■□□□□ 0.69
TRIM28-207ENST00000597136 CHPF2Q9P2E5 772 aa19.35■□□□□ 0.69
TRIM28-207ENST00000597136 A0A087WZG4 1122 aa19.34■□□□□ 0.69
TRIM28-207ENST00000597136 TCERG1O14776 1098 aaKnown RBP19.34■□□□□ 0.69
TRIM28-207ENST00000597136 TWISTNBQ3B726 338 aaPredicted RBP19.33■□□□□ 0.69
TRIM28-207ENST00000597136 ERBB4Q15303 1308 aa19.33■□□□□ 0.68
TRIM28-207ENST00000597136 VAMP4O75379 141 aa19.32■□□□□ 0.68
TRIM28-207ENST00000597136 CAMTA2O94983 1202 aa19.32■□□□□ 0.68
TRIM28-207ENST00000597136 NPM2Q86SE8 214 aaKnown RBP19.32■□□□□ 0.68
TRIM28-207ENST00000597136 NLGN1Q8N2Q7 840 aa19.32■□□□□ 0.68
TRIM28-207ENST00000597136 DDX21Q9NR30 783 aaKnown RBP eCLIP19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms