RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 SCN11AQ9UI33 1791 aa12.02□□□□□ -0.48
VPS25-205ENST00000590339 DCAF8L1A6NGE4 600 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 GNAT3A8MTJ3 354 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 CABP4P57796 275 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 MVPQ14764 893 aaKnown RBP12.02□□□□□ -0.49
VPS25-205ENST00000590339 TWISTNBQ3B726 338 aaPredicted RBP12.02□□□□□ -0.49
VPS25-205ENST00000590339 ATF7IPQ6VMQ6 1270 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 COL23A1Q86Y22 540 aaPredicted RBP12.02□□□□□ -0.49
VPS25-205ENST00000590339 DZIP1LQ8IYY4 767 aaKnown RBP12.02□□□□□ -0.49
VPS25-205ENST00000590339 MRPL50Q8N5N7 158 aaKnown RBP12.02□□□□□ -0.49
VPS25-205ENST00000590339 C8orf58Q8NAV2 365 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 ARXQ96QS3 562 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 FHDC1Q9C0D6 1143 aaPredicted RBP12.02□□□□□ -0.49
VPS25-205ENST00000590339 ATG3Q9NT62 314 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 COG6Q9Y2V7 657 aa12.02□□□□□ -0.49
VPS25-205ENST00000590339 CACNA1FO60840 1977 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 RGPD3A6NKT7 1758 aaPredicted RBP12.01□□□□□ -0.49
VPS25-205ENST00000590339 RGPD4Q7Z3J3 1758 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 LOC102724428A0A0B4J2F2 783 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 HSP90AB1P08238 724 aaKnown RBP12.01□□□□□ -0.49
VPS25-205ENST00000590339 ATP6V1AP38606 617 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 SIK1P57059 783 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 DCAF5Q96JK2 942 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 RBM42Q9BTD8 480 aaKnown RBP12.01□□□□□ -0.49
VPS25-205ENST00000590339 BABAM1Q9NWV8 329 aa12.01□□□□□ -0.49
VPS25-205ENST00000590339 PHF14O94880 888 aa12□□□□□ -0.49
VPS25-205ENST00000590339 POLD1P28340 1107 aa12□□□□□ -0.49
VPS25-205ENST00000590339 MSL1Q68DK7 614 aa12□□□□□ -0.49
VPS25-205ENST00000590339 SLC16A10Q8TF71 515 aa12□□□□□ -0.49
VPS25-205ENST00000590339 RTF1Q92541 710 aaKnown RBP12□□□□□ -0.49
VPS25-205ENST00000590339 ARHGAP45Q92619 1136 aa12□□□□□ -0.49
VPS25-205ENST00000590339 AK7Q96M32 723 aa12□□□□□ -0.49
VPS25-205ENST00000590339 SGIP1Q9BQI5 828 aa12□□□□□ -0.49
VPS25-205ENST00000590339 SYT17Q9BSW7 474 aa12□□□□□ -0.49
VPS25-205ENST00000590339 NOB1Q9ULX3 412 aaKnown RBP12□□□□□ -0.49
VPS25-205ENST00000590339 ABCC4O15439 1325 aa12□□□□□ -0.49
VPS25-205ENST00000590339 MRC1P22897 1456 aa12□□□□□ -0.49
VPS25-205ENST00000590339 DOT1LQ8TEK3 1739 aa12□□□□□ -0.49
VPS25-205ENST00000590339 ERVV-2B6SEH9 535 aa11.99□□□□□ -0.49
VPS25-205ENST00000590339 IPO8O15397 1037 aaKnown RBP11.99□□□□□ -0.49
VPS25-205ENST00000590339 NFATC2IPQ8NCF5 419 aa11.99□□□□□ -0.49
VPS25-205ENST00000590339 SOS1Q07889 1333 aaPredicted RBP11.99□□□□□ -0.49
VPS25-205ENST00000590339 SHANK3Q9BYB0 1731 aa11.99□□□□□ -0.49
VPS25-205ENST00000590339 HMGB2P26583 209 aaKnown RBP11.98□□□□□ -0.49
VPS25-205ENST00000590339 ITPK1Q13572 414 aa11.98□□□□□ -0.49
VPS25-205ENST00000590339 FTSJ3Q8IY81 847 aaKnown RBP11.98□□□□□ -0.49
VPS25-205ENST00000590339 LINC00116Q8NCU8 138 aa11.98□□□□□ -0.49
VPS25-205ENST00000590339 IL17REQ8NFR9 667 aa11.98□□□□□ -0.49
VPS25-205ENST00000590339 TCERG1O14776 1098 aaKnown RBP11.97□□□□□ -0.49
VPS25-205ENST00000590339 PTCD1O75127 700 aaKnown RBP11.97□□□□□ -0.49
VPS25-205ENST00000590339 AKAP4Q5JQC9 854 aa11.97□□□□□ -0.49
VPS25-205ENST00000590339 AMIGO3Q86WK7 504 aa11.97□□□□□ -0.49
VPS25-205ENST00000590339 LGR6Q9HBX8 967 aa11.97□□□□□ -0.49
VPS25-205ENST00000590339 TSPYL4Q9UJ04 414 aa11.97□□□□□ -0.49
VPS25-205ENST00000590339 DDX19BQ9UMR2 479 aa11.97□□□□□ -0.49
VPS25-205ENST00000590339 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.96□□□□□ -0.49
VPS25-205ENST00000590339 GNPATO15228 680 aa11.96□□□□□ -0.49
VPS25-205ENST00000590339 KRT24Q2M2I5 525 aa11.96□□□□□ -0.49
VPS25-205ENST00000590339 TMEM57Q8N5G2 664 aa11.96□□□□□ -0.49
VPS25-205ENST00000590339 FLAD1Q8NFF5 587 aa11.96□□□□□ -0.49
VPS25-205ENST00000590339 CASZ1Q86V15 1759 aa11.95□□□□□ -0.5
VPS25-205ENST00000590339 SLC4A9Q96Q91 983 aa11.95□□□□□ -0.5
VPS25-205ENST00000590339 API5Q9BZZ5 524 aaKnown RBP11.95□□□□□ -0.5
VPS25-205ENST00000590339 PCDHB15Q9Y5E8 787 aa11.95□□□□□ -0.5
VPS25-205ENST00000590339 PAPPAQ13219 1627 aa11.95□□□□□ -0.5
VPS25-205ENST00000590339 PXDNLA1KZ92 1463 aa11.95□□□□□ -0.5
VPS25-205ENST00000590339 KDM6AO15550 1401 aaPredicted RBP11.94□□□□□ -0.5
VPS25-205ENST00000590339 ELL2O00472 640 aaPredicted RBP11.94□□□□□ -0.5
VPS25-205ENST00000590339 RNMTO43148 476 aaKnown RBP11.94□□□□□ -0.5
VPS25-205ENST00000590339 IGHDP01880 384 aa11.94□□□□□ -0.5
VPS25-205ENST00000590339 TAF7Q15545 349 aaPredicted RBP11.94□□□□□ -0.5
VPS25-205ENST00000590339 RBM19Q9Y4C8 960 aaKnown RBP11.94□□□□□ -0.5
VPS25-205ENST00000590339 PTPRCP08575 1304 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 YY1P25490 414 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 SLC39A6Q13433 755 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 GPR162Q16538 588 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 ITPRIPQ8IWB1 547 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 ZBTB40Q9NUA8 1239 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 C5P01031 1676 aa11.93□□□□□ -0.5
VPS25-205ENST00000590339 LAMB4A4D0S4 1761 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 SSFA2P28290 1259 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 TRAPPC3LQ5T215 181 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 NLGN2Q8NFZ4 835 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 SLC52A2Q9HAB3 445 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 MIS18AQ9NYP9 233 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 RTCBQ9Y3I0 505 aaKnown RBP11.92□□□□□ -0.5
VPS25-205ENST00000590339 HEG1Q9ULI3 1381 aa11.92□□□□□ -0.5
VPS25-205ENST00000590339 TOGARAM1Q9Y4F4 1720 aa11.91□□□□□ -0.5
VPS25-205ENST00000590339 HOXB7P09629 217 aa11.91□□□□□ -0.5
VPS25-205ENST00000590339 HDAC1Q13547 482 aaPredicted RBP11.91□□□□□ -0.5
VPS25-205ENST00000590339 UBR2Q8IWV8 1755 aa11.91□□□□□ -0.5
VPS25-205ENST00000590339 LY75O60449 1722 aa11.91□□□□□ -0.5
VPS25-205ENST00000590339 INTS3Q68E01 1043 aaKnown RBP11.9□□□□□ -0.5
VPS25-205ENST00000590339 SKAP1Q86WV1 359 aa11.9□□□□□ -0.5
VPS25-205ENST00000590339 ARHGEF1Q92888 912 aaKnown RBP11.9□□□□□ -0.5
VPS25-205ENST00000590339 CHMP4BQ9H444 224 aaKnown RBP11.9□□□□□ -0.5
VPS25-205ENST00000590339 ATP10DQ9P241 1426 aa11.89□□□□□ -0.51
VPS25-205ENST00000590339 ZBTB7BO15156 539 aaPredicted RBP11.89□□□□□ -0.51
VPS25-205ENST00000590339 RPS6KA4O75676 772 aa11.89□□□□□ -0.51
VPS25-205ENST00000590339 RFC4P35249 363 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms