RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 UNCXA6NJT0 531 aa8.42□□□□□ -1.06
SMAD4-208ENST00000589706 M0R2N6 131 aa8.42□□□□□ -1.06
SMAD4-208ENST00000589706 LGR5O75473 907 aa8.42□□□□□ -1.06
SMAD4-208ENST00000589706 MYCP01106 439 aaPredicted RBP8.42□□□□□ -1.06
SMAD4-208ENST00000589706 NEUROD1Q13562 356 aa8.42□□□□□ -1.06
SMAD4-208ENST00000589706 NOM1Q5C9Z4 860 aaKnown RBP8.42□□□□□ -1.06
SMAD4-208ENST00000589706 NCOA1Q15788 1441 aa8.42□□□□□ -1.06
SMAD4-208ENST00000589706 ZMYM4Q5VZL5 1548 aa8.42□□□□□ -1.06
SMAD4-208ENST00000589706 GOLGA3Q08378 1498 aa8.41□□□□□ -1.06
SMAD4-208ENST00000589706 MAGI2Q86UL8 1455 aa8.41□□□□□ -1.06
SMAD4-208ENST00000589706 ZBTB24O43167 697 aaPredicted RBP8.41□□□□□ -1.06
SMAD4-208ENST00000589706 RAB15P59190 212 aa8.41□□□□□ -1.06
SMAD4-208ENST00000589706 RAPGEF2Q9Y4G8 1499 aa8.4□□□□□ -1.06
SMAD4-208ENST00000589706 PPEF1O14829 653 aaPredicted RBP8.4□□□□□ -1.06
SMAD4-208ENST00000589706 ICMTO60725 284 aa8.4□□□□□ -1.06
SMAD4-208ENST00000589706 TOM1O60784 492 aa8.4□□□□□ -1.06
SMAD4-208ENST00000589706 WEE1P30291 646 aa8.4□□□□□ -1.06
SMAD4-208ENST00000589706 ZNF211Q13398 564 aaPredicted RBP8.4□□□□□ -1.06
SMAD4-208ENST00000589706 TSEN2Q8NCE0 465 aaKnown RBP8.4□□□□□ -1.06
SMAD4-208ENST00000589706 HECW1Q76N89 1606 aa8.4□□□□□ -1.07
SMAD4-208ENST00000589706 ATP10AO60312 1499 aa8.39□□□□□ -1.07
SMAD4-208ENST00000589706 H3BRB1 525 aa8.39□□□□□ -1.07
SMAD4-208ENST00000589706 VARSP26640 1264 aaKnown RBP8.39□□□□□ -1.07
SMAD4-208ENST00000589706 INTS6LQ5JSJ4 861 aaKnown RBP8.39□□□□□ -1.07
SMAD4-208ENST00000589706 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.39□□□□□ -1.07
SMAD4-208ENST00000589706 TUT1Q9H6E5 874 aaKnown RBP8.39□□□□□ -1.07
SMAD4-208ENST00000589706 ANO2Q9NQ90 1003 aa8.39□□□□□ -1.07
SMAD4-208ENST00000589706 RGS17Q9UGC6 210 aaPredicted RBP8.39□□□□□ -1.07
SMAD4-208ENST00000589706 MAP4K5Q9Y4K4 846 aa8.39□□□□□ -1.07
SMAD4-208ENST00000589706 CLSPNQ9HAW4 1339 aa8.38□□□□□ -1.07
SMAD4-208ENST00000589706 ERVH48-1M5A8F1 160 aa8.38□□□□□ -1.07
SMAD4-208ENST00000589706 VASH1Q7L8A9 365 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-208ENST00000589706 GLYCTKQ8IVS8 523 aa8.38□□□□□ -1.07
SMAD4-208ENST00000589706 GTF3C2Q8WUA4 911 aaPredicted RBP8.38□□□□□ -1.07
SMAD4-208ENST00000589706 ESF1Q9H501 851 aaKnown RBP8.38□□□□□ -1.07
SMAD4-208ENST00000589706 SEPT3Q9UH03 358 aa8.38□□□□□ -1.07
SMAD4-208ENST00000589706 TRAPPC8Q9Y2L5 1435 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 ANKRD33BA6NCL7 494 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 PTCD1O75127 700 aaKnown RBP8.37□□□□□ -1.07
SMAD4-208ENST00000589706 SCTRP47872 440 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 WNT7BP56706 349 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 TRIM32Q13049 653 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 FKBP5Q13451 457 aaPredicted RBP8.37□□□□□ -1.07
SMAD4-208ENST00000589706 MKNK1Q9BUB5 465 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 BCL2L13Q9BXK5 485 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 ZNF358Q9NW07 568 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 C9orf84Q5VXU9 1444 aa8.37□□□□□ -1.07
SMAD4-208ENST00000589706 CAMSAP1Q5T5Y3 1602 aa8.36□□□□□ -1.07
SMAD4-208ENST00000589706 C21orf2O43822 256 aa8.36□□□□□ -1.07
SMAD4-208ENST00000589706 ERVK-9P63128 1117 aa8.36□□□□□ -1.07
SMAD4-208ENST00000589706 SKOR1P84550 965 aa8.36□□□□□ -1.07
SMAD4-208ENST00000589706 DNMT3AQ9Y6K1 912 aaPredicted RBP8.36□□□□□ -1.07
SMAD4-208ENST00000589706 C3P01024 1663 aa8.36□□□□□ -1.07
SMAD4-208ENST00000589706 CFAP74Q9C0B2 1584 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 TMEM229AB2RXF0 380 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 RNF223E7ERA6 249 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 ZNF16P17020 682 aaPredicted RBP8.35□□□□□ -1.07
SMAD4-208ENST00000589706 FKBP4Q02790 459 aaKnown RBP eCLIP8.35□□□□□ -1.07
SMAD4-208ENST00000589706 SF3B2Q13435 895 aaKnown RBP8.35□□□□□ -1.07
SMAD4-208ENST00000589706 CC2D2BQ6DHV5 1058 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 CAPN12Q6ZSI9 719 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 NPAS4Q8IUM7 802 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 ANKLE1Q8NAG6 615 aa8.35□□□□□ -1.07
SMAD4-208ENST00000589706 PURBQ96QR8 312 aaKnown RBP8.35□□□□□ -1.07
SMAD4-208ENST00000589706 IGFBP4P22692 258 aa8.34□□□□□ -1.07
SMAD4-208ENST00000589706 ECM1Q16610 540 aa8.34□□□□□ -1.07
SMAD4-208ENST00000589706 PLA2G2CQ5R387 149 aa8.34□□□□□ -1.07
SMAD4-208ENST00000589706 TRIM52Q96A61 297 aa8.34□□□□□ -1.07
SMAD4-208ENST00000589706 COL26A1Q96A83 441 aa8.34□□□□□ -1.07
SMAD4-208ENST00000589706 MRRFQ96E11 262 aaKnown RBP8.34□□□□□ -1.07
SMAD4-208ENST00000589706 SCAPERQ9BY12 1400 aa8.34□□□□□ -1.07
SMAD4-208ENST00000589706 CTTNBP2Q8WZ74 1663 aa8.34□□□□□ -1.08
SMAD4-208ENST00000589706 PLEKHD1A6NEE1 506 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 BACH1O14867 736 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 FOXO3O43524 673 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 KCNC4Q03721 635 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 ARID5BQ14865 1188 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 GAS2L2Q8NHY3 880 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 GIPC2Q8TF65 315 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 OSBPL3Q9H4L5 887 aa8.33□□□□□ -1.08
SMAD4-208ENST00000589706 KIAA1522Q9P206 1035 aaPredicted RBP8.33□□□□□ -1.08
SMAD4-208ENST00000589706 WASLO00401 505 aaPredicted RBP8.32□□□□□ -1.08
SMAD4-208ENST00000589706 MAPK1P28482 360 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 GGCXP38435 758 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 RPIAP49247 311 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 SCNN1DP51172 638 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 GDF10P55107 478 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 MTMR3Q13615 1198 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 NAA30Q147X3 362 aaPredicted RBP8.32□□□□□ -1.08
SMAD4-208ENST00000589706 POTEAQ6S8J7 498 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 TNS4Q8IZW8 715 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 EHBP1Q8NDI1 1231 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 SCG3Q8WXD2 468 aaKnown RBP8.32□□□□□ -1.08
SMAD4-208ENST00000589706 CDK15Q96Q40 435 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 DCTN4Q9UJW0 460 aa8.32□□□□□ -1.08
SMAD4-208ENST00000589706 EIF5BO60841 1220 aaKnown RBP8.31□□□□□ -1.08
SMAD4-208ENST00000589706 ARHGAP4P98171 946 aa8.31□□□□□ -1.08
SMAD4-208ENST00000589706 DHX9Q08211 1270 aaKnown RBP8.31□□□□□ -1.08
SMAD4-208ENST00000589706 ZNF326Q5BKZ1 582 aaKnown RBP8.31□□□□□ -1.08
SMAD4-208ENST00000589706 ASB16Q96NS5 453 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms