RNA–Protein interactions for RNA: ENST00000588032.5

TPM4-207, Transcript of tropomyosin 4, humanhuman

TSL 3

Gene TPM4, Length 712 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-207ENST00000588032 NEUROD2Q15784 382 aa13.26□□□□□ -0.29
TPM4-207ENST00000588032 CCDC184Q52MB2 194 aa13.26□□□□□ -0.29
TPM4-207ENST00000588032 SMIM5Q71RC9 77 aa13.26□□□□□ -0.29
TPM4-207ENST00000588032 UBR2Q8IWV8 1755 aa13.26□□□□□ -0.29
TPM4-207ENST00000588032 TJP1Q07157 1748 aa13.25□□□□□ -0.29
TPM4-207ENST00000588032 SOS1Q07889 1333 aaPredicted RBP13.25□□□□□ -0.29
TPM4-207ENST00000588032 THUMPD2Q9BTF0 503 aaKnown RBP13.25□□□□□ -0.29
TPM4-207ENST00000588032 RRP7AQ9Y3A4 280 aaKnown RBP13.25□□□□□ -0.29
TPM4-207ENST00000588032 COL24A1Q17RW2 1714 aa13.25□□□□□ -0.29
TPM4-207ENST00000588032 DLG5Q8TDM6 1919 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 A0A087WZG4 1122 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 APAF1O14727 1248 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 MSL1Q68DK7 614 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 NPM2Q86SE8 214 aaKnown RBP13.24□□□□□ -0.29
TPM4-207ENST00000588032 SYT17Q9BSW7 474 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 FHDC1Q9C0D6 1143 aaPredicted RBP13.24□□□□□ -0.29
TPM4-207ENST00000588032 MIS18AQ9NYP9 233 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 TRIM35Q9UPQ4 493 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 ZBTB1Q9Y2K1 713 aa13.24□□□□□ -0.29
TPM4-207ENST00000588032 ZPR1O75312 459 aa13.23□□□□□ -0.29
TPM4-207ENST00000588032 CANXP27824 592 aaKnown RBP13.23□□□□□ -0.29
TPM4-207ENST00000588032 IL6STP40189 918 aaPredicted RBP13.23□□□□□ -0.29
TPM4-207ENST00000588032 EIF5P55010 431 aaKnown RBP13.23□□□□□ -0.29
TPM4-207ENST00000588032 EIF4A1P60842 406 aaKnown RBP13.23□□□□□ -0.29
TPM4-207ENST00000588032 CALD1Q05682 793 aaKnown RBP13.23□□□□□ -0.29
TPM4-207ENST00000588032 TSPYL4Q9UJ04 414 aa13.23□□□□□ -0.29
TPM4-207ENST00000588032 USP16Q9Y5T5 823 aa13.23□□□□□ -0.29
TPM4-207ENST00000588032 USP42Q9H9J4 1324 aaKnown RBP13.22□□□□□ -0.29
TPM4-207ENST00000588032 MYH14Q7Z406 1995 aaKnown RBP13.22□□□□□ -0.29
TPM4-207ENST00000588032 GIGYF1O75420 1035 aaPredicted RBP13.22□□□□□ -0.29
TPM4-207ENST00000588032 GYS1P13807 737 aa13.22□□□□□ -0.29
TPM4-207ENST00000588032 NCBP3Q53F19 620 aaKnown RBP13.22□□□□□ -0.29
TPM4-207ENST00000588032 NARFQ9UHQ1 456 aa13.22□□□□□ -0.29
TPM4-207ENST00000588032 CHL1O00533 1208 aa13.21□□□□□ -0.29
TPM4-207ENST00000588032 A1BGP04217 495 aa13.21□□□□□ -0.29
TPM4-207ENST00000588032 CD2APQ9Y5K6 639 aa13.21□□□□□ -0.29
TPM4-207ENST00000588032 COL15A1P39059 1388 aa13.2□□□□□ -0.3
TPM4-207ENST00000588032 MMP10P09238 476 aa13.2□□□□□ -0.3
TPM4-207ENST00000588032 CFAP44Q96MT7 982 aa13.2□□□□□ -0.3
TPM4-207ENST00000588032 PRAMEF22A3QJZ6 481 aa13.19□□□□□ -0.3
TPM4-207ENST00000588032 CCDC27Q2M243 656 aa13.19□□□□□ -0.3
TPM4-207ENST00000588032 USPL1Q5W0Q7 1092 aa13.19□□□□□ -0.3
TPM4-207ENST00000588032 SRP68Q9UHB9 627 aaKnown RBP13.19□□□□□ -0.3
TPM4-207ENST00000588032 PARP3Q9Y6F1 533 aa13.19□□□□□ -0.3
TPM4-207ENST00000588032 FKBP8Q14318 412 aa13.18□□□□□ -0.3
TPM4-207ENST00000588032 KLHL34Q8N239 644 aa13.18□□□□□ -0.3
TPM4-207ENST00000588032 NGEFQ8N5V2 710 aa13.18□□□□□ -0.3
TPM4-207ENST00000588032 LAS1LQ9Y4W2 734 aaKnown RBP13.18□□□□□ -0.3
TPM4-207ENST00000588032 KDM3BQ7LBC6 1761 aa13.17□□□□□ -0.3
TPM4-207ENST00000588032 ERBB4Q15303 1308 aa13.17□□□□□ -0.3
TPM4-207ENST00000588032 RGL2O15211 777 aa13.17□□□□□ -0.3
TPM4-207ENST00000588032 TM4SF1P30408 202 aa13.17□□□□□ -0.3
TPM4-207ENST00000588032 HOXD11P31277 338 aaPredicted RBP13.17□□□□□ -0.3
TPM4-207ENST00000588032 GNAI1P63096 354 aa13.17□□□□□ -0.3
TPM4-207ENST00000588032 IFT57Q9NWB7 429 aa13.17□□□□□ -0.3
TPM4-207ENST00000588032 ZNF330Q9Y3S2 320 aaPredicted RBP13.17□□□□□ -0.3
TPM4-207ENST00000588032 ZNF853P0CG23 659 aa13.16□□□□□ -0.3
TPM4-207ENST00000588032 DZIP3Q86Y13 1208 aaKnown RBP13.16□□□□□ -0.3
TPM4-207ENST00000588032 FAM9BQ8IZU0 186 aa13.16□□□□□ -0.3
TPM4-207ENST00000588032 C4AP0C0L4 1744 aa13.16□□□□□ -0.3
TPM4-207ENST00000588032 NBPF26B4DH59 902 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 CCER2I3L3R5 266 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 HOXB7P09629 217 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 TGFB2P61812 414 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 NBPF10Q6P3W6 841 aaKnown RBP13.15□□□□□ -0.3
TPM4-207ENST00000588032 CLEC4GQ6UXB4 293 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 WWC1Q8IX03 1113 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 NBPF15Q8N660 670 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 BCL2L12Q9HB09 334 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 TBC1D2BQ9UPU7 963 aa13.15□□□□□ -0.3
TPM4-207ENST00000588032 CAMTA2O94983 1202 aa13.14□□□□□ -0.31
TPM4-207ENST00000588032 NFIXQ14938 502 aa13.14□□□□□ -0.31
TPM4-207ENST00000588032 PPP4R3CPQ6ZMV5 832 aa13.14□□□□□ -0.31
TPM4-207ENST00000588032 CHMP4AQ9BY43 222 aa13.14□□□□□ -0.31
TPM4-207ENST00000588032 MBIPQ9NS73 344 aa13.14□□□□□ -0.31
TPM4-207ENST00000588032 ZNF652Q9Y2D9 606 aa13.14□□□□□ -0.31
TPM4-207ENST00000588032 POLRMTO00411 1230 aaKnown RBP13.13□□□□□ -0.31
TPM4-207ENST00000588032 PIP4K2AP48426 406 aaPredicted RBP13.13□□□□□ -0.31
TPM4-207ENST00000588032 NLGN2Q8NFZ4 835 aa13.13□□□□□ -0.31
TPM4-207ENST00000588032 IL16Q14005 1332 aa13.13□□□□□ -0.31
TPM4-207ENST00000588032 ERVV-1B6SEH8 477 aa13.12□□□□□ -0.31
TPM4-207ENST00000588032 EIF2S2P20042 333 aaKnown RBP13.12□□□□□ -0.31
TPM4-207ENST00000588032 DDR1Q08345 913 aa13.12□□□□□ -0.31
TPM4-207ENST00000588032 GPR162Q16538 588 aa13.12□□□□□ -0.31
TPM4-207ENST00000588032 WDR63Q8IWG1 891 aa13.12□□□□□ -0.31
TPM4-207ENST00000588032 SETDB2Q96T68 719 aa13.12□□□□□ -0.31
TPM4-207ENST00000588032 SERPINB2P05120 415 aa13.11□□□□□ -0.31
TPM4-207ENST00000588032 TBC1D9BQ66K14 1250 aa13.11□□□□□ -0.31
TPM4-207ENST00000588032 LAMB4A4D0S4 1761 aa13.11□□□□□ -0.31
TPM4-207ENST00000588032 GRIN3BO60391 1043 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 MYL6BP14649 208 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 PDIA6Q15084 440 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 DUSP27Q5VZP5 1158 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 DIEXFQ68CQ4 756 aaKnown RBP13.1□□□□□ -0.31
TPM4-207ENST00000588032 KIF6Q6ZMV9 814 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 BICDL1Q6ZP65 573 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 DDX21Q9NR30 783 aaKnown RBP eCLIP13.1□□□□□ -0.31
TPM4-207ENST00000588032 C10orf71Q711Q0 1435 aa13.1□□□□□ -0.31
TPM4-207ENST00000588032 CARMIL3Q8ND23 1372 aa13.09□□□□□ -0.31
TPM4-207ENST00000588032 KRT24Q2M2I5 525 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms