RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 IFT57Q9NWB7 429 aa22.81■■□□□ 1.24
SHMT2-225ENST00000556798 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.8■■□□□ 1.24
SHMT2-225ENST00000556798 ZNF853P0CG23 659 aa22.8■■□□□ 1.24
SHMT2-225ENST00000556798 COL23A1Q86Y22 540 aaPredicted RBP22.8■■□□□ 1.24
SHMT2-225ENST00000556798 ZBTB1Q9Y2K1 713 aa22.8■■□□□ 1.24
SHMT2-225ENST00000556798 USP16Q9Y5T5 823 aa22.8■■□□□ 1.24
SHMT2-225ENST00000556798 MSH5O43196 834 aa22.79■■□□□ 1.24
SHMT2-225ENST00000556798 STARD3NLO95772 234 aa22.79■■□□□ 1.24
SHMT2-225ENST00000556798 GNAI1P63096 354 aa22.79■■□□□ 1.24
SHMT2-225ENST00000556798 KRT24Q2M2I5 525 aa22.79■■□□□ 1.24
SHMT2-225ENST00000556798 TEX13AQ9BXU3 409 aaPredicted RBP22.79■■□□□ 1.24
SHMT2-225ENST00000556798 RTCBQ9Y3I0 505 aaKnown RBP22.79■■□□□ 1.24
SHMT2-225ENST00000556798 GIGYF1O75420 1035 aaPredicted RBP22.78■■□□□ 1.24
SHMT2-225ENST00000556798 ZBTB7AO95365 584 aa22.78■■□□□ 1.24
SHMT2-225ENST00000556798 SSFA2P28290 1259 aa22.78■■□□□ 1.24
SHMT2-225ENST00000556798 RPS6KA4O75676 772 aa22.77■■□□□ 1.24
SHMT2-225ENST00000556798 CANXP27824 592 aaKnown RBP22.77■■□□□ 1.24
SHMT2-225ENST00000556798 A1BGP04217 495 aa22.76■■□□□ 1.23
SHMT2-225ENST00000556798 PIP4K2AP48426 406 aaPredicted RBP22.76■■□□□ 1.23
SHMT2-225ENST00000556798 TSR2Q969E8 191 aaKnown RBP22.76■■□□□ 1.23
SHMT2-225ENST00000556798 COL24A1Q17RW2 1714 aa22.76■■□□□ 1.23
SHMT2-225ENST00000556798 SOS1Q07889 1333 aaPredicted RBP22.76■■□□□ 1.23
SHMT2-225ENST00000556798 LRP5O75197 1615 aa22.75■■□□□ 1.23
SHMT2-225ENST00000556798 NGEFQ8N5V2 710 aa22.75■■□□□ 1.23
SHMT2-225ENST00000556798 FLAD1Q8NFF5 587 aa22.75■■□□□ 1.23
SHMT2-225ENST00000556798 IL16Q14005 1332 aa22.75■■□□□ 1.23
SHMT2-225ENST00000556798 TRAPPC3LQ5T215 181 aa22.74■■□□□ 1.23
SHMT2-225ENST00000556798 WDR63Q8IWG1 891 aa22.74■■□□□ 1.23
SHMT2-225ENST00000556798 ZNF521Q96K83 1311 aa22.74■■□□□ 1.23
SHMT2-225ENST00000556798 ARHGEF1Q92888 912 aaKnown RBP22.73■■□□□ 1.23
SHMT2-225ENST00000556798 ATF5Q9Y2D1 282 aaPredicted RBP22.73■■□□□ 1.23
SHMT2-225ENST00000556798 ZNF330Q9Y3S2 320 aaPredicted RBP22.73■■□□□ 1.23
SHMT2-225ENST00000556798 COL15A1P39059 1388 aa22.73■■□□□ 1.23
SHMT2-225ENST00000556798 ADRA2BP18089 450 aa22.72■■□□□ 1.23
SHMT2-225ENST00000556798 SPINK5Q9NQ38 1064 aaPredicted RBP22.72■■□□□ 1.23
SHMT2-225ENST00000556798 SCN7AQ01118 1682 aa22.71■■□□□ 1.23
SHMT2-225ENST00000556798 BCORQ6W2J9 1755 aa22.71■■□□□ 1.23
SHMT2-225ENST00000556798 MSL1Q68DK7 614 aa22.71■■□□□ 1.23
SHMT2-225ENST00000556798 MTFR1LQ9H019 292 aa22.71■■□□□ 1.23
SHMT2-225ENST00000556798 FANCIQ9NVI1 1328 aa22.71■■□□□ 1.23
SHMT2-225ENST00000556798 NBPF26B4DH59 902 aa22.7■■□□□ 1.22
SHMT2-225ENST00000556798 EIF2S2P20042 333 aaKnown RBP22.7■■□□□ 1.22
SHMT2-225ENST00000556798 RFC4P35249 363 aa22.7■■□□□ 1.22
SHMT2-225ENST00000556798 NBPF10Q6P3W6 841 aaKnown RBP22.7■■□□□ 1.22
SHMT2-225ENST00000556798 NBPF15Q8N660 670 aa22.7■■□□□ 1.22
SHMT2-225ENST00000556798 NECTIN2Q92692 538 aa22.7■■□□□ 1.22
SHMT2-225ENST00000556798 ELL2O00472 640 aaPredicted RBP22.69■■□□□ 1.22
SHMT2-225ENST00000556798 EIF5P55010 431 aaKnown RBP22.69■■□□□ 1.22
SHMT2-225ENST00000556798 DUSP27Q5VZP5 1158 aa22.69■■□□□ 1.22
SHMT2-225ENST00000556798 SLC16A10Q8TF71 515 aa22.69■■□□□ 1.22
SHMT2-225ENST00000556798 SRP68Q9UHB9 627 aaKnown RBP22.69■■□□□ 1.22
SHMT2-225ENST00000556798 IL6STP40189 918 aaPredicted RBP22.68■■□□□ 1.22
SHMT2-225ENST00000556798 C8orf58Q8NAV2 365 aa22.68■■□□□ 1.22
SHMT2-225ENST00000556798 SPON1Q9HCB6 807 aa22.68■■□□□ 1.22
SHMT2-225ENST00000556798 HNRNPUQ00839 825 aaKnown RBP eCLIP22.67■■□□□ 1.22
SHMT2-225ENST00000556798 USP42Q9H9J4 1324 aaKnown RBP22.66■■□□□ 1.22
SHMT2-225ENST00000556798 TSPYL6Q8N831 410 aa22.66■■□□□ 1.22
SHMT2-225ENST00000556798 HOXB7P09629 217 aa22.65■■□□□ 1.22
SHMT2-225ENST00000556798 MYL6BP14649 208 aa22.65■■□□□ 1.22
SHMT2-225ENST00000556798 PTGER2P43116 358 aa22.65■■□□□ 1.22
SHMT2-225ENST00000556798 HDGFL1Q5TGJ6 251 aa22.65■■□□□ 1.22
SHMT2-225ENST00000556798 ARXQ96QS3 562 aa22.65■■□□□ 1.22
SHMT2-225ENST00000556798 SRCAPQ6ZRS2 3230 aa22.64■■□□□ 1.22
SHMT2-225ENST00000556798 ANXA1P04083 346 aa22.64■■□□□ 1.21
SHMT2-225ENST00000556798 GOLGA2Q08379 1002 aa22.64■■□□□ 1.21
SHMT2-225ENST00000556798 PROSER3Q2NL68 480 aa22.64■■□□□ 1.21
SHMT2-225ENST00000556798 USPL1Q5W0Q7 1092 aa22.64■■□□□ 1.21
SHMT2-225ENST00000556798 MYH16Q9H6N6 1097 aa22.64■■□□□ 1.21
SHMT2-225ENST00000556798 TBC1D2BQ9UPU7 963 aa22.64■■□□□ 1.21
SHMT2-225ENST00000556798 ERBB4Q15303 1308 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 A0A087WZG4 1122 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 ZPR1O75312 459 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 GYS1P13807 737 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 NPM2Q86SE8 214 aaKnown RBP22.63■■□□□ 1.21
SHMT2-225ENST00000556798 SGIP1Q9BQI5 828 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 NARFQ9UHQ1 456 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 NUP98P52948 1817 aa22.63■■□□□ 1.21
SHMT2-225ENST00000556798 EXOSC9Q06265 439 aaKnown RBP22.62■■□□□ 1.21
SHMT2-225ENST00000556798 CDCA7LQ96GN5 454 aa22.62■■□□□ 1.21
SHMT2-225ENST00000556798 CHPF2Q9P2E5 772 aa22.62■■□□□ 1.21
SHMT2-225ENST00000556798 PDIA6Q15084 440 aa22.61■■□□□ 1.21
SHMT2-225ENST00000556798 DZIP3Q86Y13 1208 aaKnown RBP22.61■■□□□ 1.21
SHMT2-225ENST00000556798 POLD1P28340 1107 aa22.6■■□□□ 1.21
SHMT2-225ENST00000556798 FKBP8Q14318 412 aa22.6■■□□□ 1.21
SHMT2-225ENST00000556798 TWISTNBQ3B726 338 aaPredicted RBP22.6■■□□□ 1.21
SHMT2-225ENST00000556798 BCL2L12Q9HB09 334 aa22.6■■□□□ 1.21
SHMT2-225ENST00000556798 AFDNP55196 1824 aaKnown RBP22.59■■□□□ 1.21
SHMT2-225ENST00000556798 E9PSI1 815 aa22.59■■□□□ 1.21
SHMT2-225ENST00000556798 SLFN5Q08AF3 891 aa22.59■■□□□ 1.21
SHMT2-225ENST00000556798 CACNA1FO60840 1977 aa22.59■■□□□ 1.21
SHMT2-225ENST00000556798 CAMTA2O94983 1202 aa22.58■■□□□ 1.21
SHMT2-225ENST00000556798 TTLL7Q6ZT98 887 aa22.58■■□□□ 1.21
SHMT2-225ENST00000556798 LRP10Q7Z4F1 713 aa22.58■■□□□ 1.21
SHMT2-225ENST00000556798 DDX21Q9NR30 783 aaKnown RBP eCLIP22.58■■□□□ 1.21
SHMT2-225ENST00000556798 TCERG1O14776 1098 aaKnown RBP22.57■■□□□ 1.2
SHMT2-225ENST00000556798 NLGN1Q8N2Q7 840 aa22.57■■□□□ 1.2
SHMT2-225ENST00000556798 PPP1R1BQ9UD71 204 aaPredicted RBP22.57■■□□□ 1.2
SHMT2-225ENST00000556798 ANKRD36CQ5JPF3 1778 aa22.56■■□□□ 1.2
SHMT2-225ENST00000556798 MMP10P09238 476 aa22.56■■□□□ 1.2
SHMT2-225ENST00000556798 DBF4Q9UBU7 674 aaPredicted RBP22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms