RNA–Protein interactions for RNA: ENST00000546080.5

SRP54-202, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 2,187 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-202ENST00000546080 TCHHQ07283 1943 aa17.05■□□□□ 0.32
SRP54-202ENST00000546080 ITSN1Q15811 1721 aa17.05■□□□□ 0.32
SRP54-202ENST00000546080 SYT1P21579 422 aa17.05■□□□□ 0.32
SRP54-202ENST00000546080 GIMAP6Q6P9H5 292 aa17.05■□□□□ 0.32
SRP54-202ENST00000546080 RTF1Q92541 710 aaKnown RBP17.05■□□□□ 0.32
SRP54-202ENST00000546080 FUCA2Q9BTY2 467 aa17.05■□□□□ 0.32
SRP54-202ENST00000546080 SMC3Q9UQE7 1217 aa17.05■□□□□ 0.32
SRP54-202ENST00000546080 AKAP12Q02952 1782 aa17.04■□□□□ 0.32
SRP54-202ENST00000546080 RAD50Q92878 1312 aa17.04■□□□□ 0.32
SRP54-202ENST00000546080 AK2P54819 239 aa17.04■□□□□ 0.32
SRP54-202ENST00000546080 KIAA1524Q8TCG1 905 aa17.04■□□□□ 0.32
SRP54-202ENST00000546080 SNX14Q9Y5W7 946 aa17.04■□□□□ 0.32
SRP54-202ENST00000546080 KIF13AQ9H1H9 1805 aa17.03■□□□□ 0.32
SRP54-202ENST00000546080 GOLGA6L6A8MZA4 724 aa17.03■□□□□ 0.32
SRP54-202ENST00000546080 PDCL2Q8N4E4 241 aa17.03■□□□□ 0.32
SRP54-202ENST00000546080 TTC14Q96N46 770 aa17.03■□□□□ 0.32
SRP54-202ENST00000546080 LIMCH1Q9UPQ0 1083 aa17.03■□□□□ 0.32
SRP54-202ENST00000546080 LRRFIP2Q9Y608 721 aaKnown RBP17.03■□□□□ 0.32
SRP54-202ENST00000546080 RICTORQ6R327 1708 aa17.02■□□□□ 0.32
SRP54-202ENST00000546080 FLIIQ13045 1269 aa17.02■□□□□ 0.32
SRP54-202ENST00000546080 GTPBP4Q9BZE4 634 aaKnown RBP17.02■□□□□ 0.32
SRP54-202ENST00000546080 IL1RAPL2Q9NP60 686 aa17.02■□□□□ 0.32
SRP54-202ENST00000546080 PYCARDQ9ULZ3 195 aa17.02■□□□□ 0.32
SRP54-202ENST00000546080 ATP2B3Q16720 1220 aa17.02■□□□□ 0.31
SRP54-202ENST00000546080 KCNF1Q9H3M0 494 aa17.02■□□□□ 0.31
SRP54-202ENST00000546080 RIOK3O14730 519 aaKnown RBP17.01■□□□□ 0.31
SRP54-202ENST00000546080 SGSM2O43147 1006 aa17.01■□□□□ 0.31
SRP54-202ENST00000546080 MAP4K4O95819 1239 aaPredicted RBP17.01■□□□□ 0.31
SRP54-202ENST00000546080 RUFY3Q7L099 469 aa17.01■□□□□ 0.31
SRP54-202ENST00000546080 NUTM1Q86Y26 1132 aa17.01■□□□□ 0.31
SRP54-202ENST00000546080 AP5Z1O43299 807 aa17.01■□□□□ 0.31
SRP54-202ENST00000546080 TRHP20396 242 aaPredicted RBP17.01■□□□□ 0.31
SRP54-202ENST00000546080 SPC24Q8NBT2 197 aa17.01■□□□□ 0.31
SRP54-202ENST00000546080 LARP6Q9BRS8 491 aaKnown RBP17.01■□□□□ 0.31
SRP54-202ENST00000546080 RGPD1P0DJD0 1748 aa17■□□□□ 0.31
SRP54-202ENST00000546080 SOS1Q07889 1333 aaPredicted RBP17■□□□□ 0.31
SRP54-202ENST00000546080 A2ML1A8K2U0 1454 aa17■□□□□ 0.31
SRP54-202ENST00000546080 HSP90AB2PQ58FF8 381 aa17■□□□□ 0.31
SRP54-202ENST00000546080 TXNDC2Q86VQ3 553 aa17■□□□□ 0.31
SRP54-202ENST00000546080 XRN1Q8IZH2 1706 aaKnown RBP17■□□□□ 0.31
SRP54-202ENST00000546080 FOXO3O43524 673 aa16.99■□□□□ 0.31
SRP54-202ENST00000546080 CCDC192P0DO97 292 aa16.99■□□□□ 0.31
SRP54-202ENST00000546080 CCDC30Q5VVM6 783 aa16.99■□□□□ 0.31
SRP54-202ENST00000546080 DNM1Q05193 864 aaKnown RBP16.99■□□□□ 0.31
SRP54-202ENST00000546080 MTHFSDQ2M296 383 aaKnown RBP16.99■□□□□ 0.31
SRP54-202ENST00000546080 LSG1Q9H089 658 aaKnown RBP16.99■□□□□ 0.31
SRP54-202ENST00000546080 TTC21BQ7Z4L5 1316 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 FAM208AQ9UK61 1670 aaKnown RBP16.98■□□□□ 0.31
SRP54-202ENST00000546080 UBTFL1P0CB47 393 aaPredicted RBP16.98■□□□□ 0.31
SRP54-202ENST00000546080 CNTROBQ8N137 903 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 SPATA31D1Q6ZQQ2 1576 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 RAB11FIP3O75154 756 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 GJB2P29033 226 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 RASEFQ8IZ41 740 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 ANKRD7Q92527 254 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 PEAK1Q9H792 1746 aa16.98■□□□□ 0.31
SRP54-202ENST00000546080 SPDYE4A6NLX3 237 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 CASTP20810 708 aaKnown RBP16.97■□□□□ 0.31
SRP54-202ENST00000546080 CCDC83Q8IWF9 413 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 PI4K2BQ8TCG2 481 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 NECTIN2Q92692 538 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 MAP3K19Q56UN5 1328 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 OVOS2A0A0J9YW53 1432 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 OVOS2Q6IE36 1432 aa16.97■□□□□ 0.31
SRP54-202ENST00000546080 LARGE1O95461 756 aa16.96■□□□□ 0.31
SRP54-202ENST00000546080 MTMR6Q9Y217 621 aa16.96■□□□□ 0.31
SRP54-202ENST00000546080 TSPOAP1O95153 1857 aa16.96■□□□□ 0.31
SRP54-202ENST00000546080 METP08581 1390 aa16.96■□□□□ 0.31
SRP54-202ENST00000546080 KIF20AO95235 890 aa16.96■□□□□ 0.31
SRP54-202ENST00000546080 SSH3Q8TE77 659 aa16.96■□□□□ 0.31
SRP54-202ENST00000546080 PRR36Q9H6K5 1346 aa16.96■□□□□ 0.3
SRP54-202ENST00000546080 RIMS1Q86UR5 1692 aaKnown RBP16.96■□□□□ 0.3
SRP54-202ENST00000546080 PXDNLA1KZ92 1463 aa16.95■□□□□ 0.3
SRP54-202ENST00000546080 CTIFO43310 598 aaKnown RBP16.95■□□□□ 0.3
SRP54-202ENST00000546080 SURF6O75683 361 aaKnown RBP16.95■□□□□ 0.3
SRP54-202ENST00000546080 VPS37CA5D8V6 355 aaPredicted RBP16.95■□□□□ 0.3
SRP54-202ENST00000546080 CPA1P15085 419 aa16.95■□□□□ 0.3
SRP54-202ENST00000546080 U2AF2P26368 475 aaKnown RBP eCLIP16.95■□□□□ 0.31e-7■■■■■ 102.2
SRP54-202ENST00000546080 CWC27Q6UX04 472 aaKnown RBP16.95■□□□□ 0.3
SRP54-202ENST00000546080 FAM200AQ8TCP9 573 aa16.95■□□□□ 0.3
SRP54-202ENST00000546080 RHPN1Q8TCX5 695 aa16.95■□□□□ 0.3
SRP54-202ENST00000546080 USP44Q9H0E7 712 aa16.95■□□□□ 0.3
SRP54-202ENST00000546080 HYPKQ9NX55 129 aa16.95■□□□□ 0.3
SRP54-202ENST00000546080 NRXN3Q9Y4C0 1643 aa16.94■□□□□ 0.3
SRP54-202ENST00000546080 SOX12O15370 315 aa16.94■□□□□ 0.3
SRP54-202ENST00000546080 PTGS1P23219 599 aa16.94■□□□□ 0.3
SRP54-202ENST00000546080 ZSCAN31Q96LW9 406 aaPredicted RBP16.94■□□□□ 0.3
SRP54-202ENST00000546080 N4BP2Q86UW6 1770 aaPredicted RBP16.94■□□□□ 0.3
SRP54-202ENST00000546080 KIF1BPQ96EK5 621 aa16.94■□□□□ 0.3
SRP54-202ENST00000546080 SH2B1Q9NRF2 756 aaPredicted RBP16.94■□□□□ 0.3
SRP54-202ENST00000546080 PDRG1Q9NUG6 133 aa16.94■□□□□ 0.3
SRP54-202ENST00000546080 SPG7Q9UQ90 795 aa16.94■□□□□ 0.3
SRP54-202ENST00000546080 MAP3K11Q16584 847 aa16.93■□□□□ 0.3
SRP54-202ENST00000546080 PPP1R42Q7Z4L9 355 aa16.93■□□□□ 0.3
SRP54-202ENST00000546080 NUP62CLQ9H1M0 184 aa16.93■□□□□ 0.3
SRP54-202ENST00000546080 PODXL2Q9NZ53 605 aa16.93■□□□□ 0.3
SRP54-202ENST00000546080 VPS53Q5VIR6 699 aa16.92■□□□□ 0.3
SRP54-202ENST00000546080 JAKMIP1Q96N16 626 aaKnown RBP16.92■□□□□ 0.3
SRP54-202ENST00000546080 NALCNQ8IZF0 1738 aa16.92■□□□□ 0.3
SRP54-202ENST00000546080 POLA2Q14181 598 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms