RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 RREB1Q92766 1687 aa15.74■□□□□ 0.11
DDX55-210ENST00000543016 DUSP27Q5VZP5 1158 aa15.74■□□□□ 0.11
DDX55-210ENST00000543016 LINC00116Q8NCU8 138 aa15.74■□□□□ 0.11
DDX55-210ENST00000543016 FLAD1Q8NFF5 587 aa15.74■□□□□ 0.11
DDX55-210ENST00000543016 TSR2Q969E8 191 aaKnown RBP15.74■□□□□ 0.11
DDX55-210ENST00000543016 SPINK5Q9NQ38 1064 aaPredicted RBP15.74■□□□□ 0.11
DDX55-210ENST00000543016 CT47B1P0C2W7 299 aaPredicted RBP15.73■□□□□ 0.11
DDX55-210ENST00000543016 SLC15A2Q16348 729 aa15.73■□□□□ 0.11
DDX55-210ENST00000543016 AKT1S1Q96B36 256 aa15.73■□□□□ 0.11
DDX55-210ENST00000543016 AK7Q96M32 723 aa15.73■□□□□ 0.11
DDX55-210ENST00000543016 CCDC87Q9NVE4 849 aa15.73■□□□□ 0.11
DDX55-210ENST00000543016 USP16Q9Y5T5 823 aa15.73■□□□□ 0.11
DDX55-210ENST00000543016 C5P01031 1676 aa15.73■□□□□ 0.11
DDX55-210ENST00000543016 CRKLP46109 303 aaKnown RBP15.72■□□□□ 0.11
DDX55-210ENST00000543016 KCNQ4P56696 695 aa15.72■□□□□ 0.11
DDX55-210ENST00000543016 ZNF428Q96B54 188 aa15.72■□□□□ 0.11
DDX55-210ENST00000543016 RPS6KA4O75676 772 aa15.71■□□□□ 0.11
DDX55-210ENST00000543016 TWISTNBQ3B726 338 aaPredicted RBP15.71■□□□□ 0.11
DDX55-210ENST00000543016 INTS5Q6P9B9 1019 aaKnown RBP15.71■□□□□ 0.11
DDX55-210ENST00000543016 NPM2Q86SE8 214 aaKnown RBP15.71■□□□□ 0.11
DDX55-210ENST00000543016 C8orf58Q8NAV2 365 aa15.71■□□□□ 0.11
DDX55-210ENST00000543016 CDCA7LQ96GN5 454 aa15.71■□□□□ 0.11
DDX55-210ENST00000543016 RTCBQ9Y3I0 505 aaKnown RBP15.71■□□□□ 0.11
DDX55-210ENST00000543016 A0A087WZG4 1122 aa15.7■□□□□ 0.1
DDX55-210ENST00000543016 SSFA2P28290 1259 aa15.7■□□□□ 0.1
DDX55-210ENST00000543016 IL6STP40189 918 aaPredicted RBP15.7■□□□□ 0.1
DDX55-210ENST00000543016 EXOSC9Q06265 439 aaKnown RBP15.7■□□□□ 0.1
DDX55-210ENST00000543016 HDGFL1Q5TGJ6 251 aa15.7■□□□□ 0.1
DDX55-210ENST00000543016 CCDC30Q5VVM6 783 aa15.7■□□□□ 0.1
DDX55-210ENST00000543016 TFCP2L1Q9NZI6 479 aa15.7■□□□□ 0.1
DDX55-210ENST00000543016 C4BP0C0L5 1744 aa15.69■□□□□ 0.1
DDX55-210ENST00000543016 TJP1Q07157 1748 aa15.69■□□□□ 0.1
DDX55-210ENST00000543016 NUP188Q5SRE5 1749 aa15.69■□□□□ 0.1
DDX55-210ENST00000543016 TAF1LQ8IZX4 1826 aa15.69■□□□□ 0.1
DDX55-210ENST00000543016 GNPATO15228 680 aa15.69■□□□□ 0.1
DDX55-210ENST00000543016 COL5A3P25940 1745 aaPredicted RBP15.68■□□□□ 0.1
DDX55-210ENST00000543016 PRAMEF22A3QJZ6 481 aa15.68■□□□□ 0.1
DDX55-210ENST00000543016 VAMP4O75379 141 aa15.68■□□□□ 0.1
DDX55-210ENST00000543016 EIF2S2P20042 333 aaKnown RBP15.68■□□□□ 0.1
DDX55-210ENST00000543016 ZNF827Q17R98 1081 aa15.68■□□□□ 0.1
DDX55-210ENST00000543016 KRT24Q2M2I5 525 aa15.68■□□□□ 0.1
DDX55-210ENST00000543016 TRAPPC3LQ5T215 181 aa15.68■□□□□ 0.1
DDX55-210ENST00000543016 ANO8Q9HCE9 1232 aaPredicted RBP15.68■□□□□ 0.1
DDX55-210ENST00000543016 DBF4Q9UBU7 674 aaPredicted RBP15.68■□□□□ 0.1
DDX55-210ENST00000543016 ELL2O00472 640 aaPredicted RBP15.67■□□□□ 0.1
DDX55-210ENST00000543016 RGL2O15211 777 aa15.67■□□□□ 0.1
DDX55-210ENST00000543016 A1BGP04217 495 aa15.67■□□□□ 0.1
DDX55-210ENST00000543016 EIF5P55010 431 aaKnown RBP15.67■□□□□ 0.1
DDX55-210ENST00000543016 TSPYL6Q8N831 410 aa15.67■□□□□ 0.1
DDX55-210ENST00000543016 DDX21Q9NR30 783 aaKnown RBP eCLIP15.67■□□□□ 0.1
DDX55-210ENST00000543016 ZBTB1Q9Y2K1 713 aa15.67■□□□□ 0.1
DDX55-210ENST00000543016 CANXP27824 592 aaKnown RBP15.66■□□□□ 0.1
DDX55-210ENST00000543016 SLC16A10Q8TF71 515 aa15.66■□□□□ 0.1
DDX55-210ENST00000543016 STK31Q9BXU1 1019 aa15.66■□□□□ 0.1
DDX55-210ENST00000543016 HYPKQ9NX55 129 aa15.66■□□□□ 0.1
DDX55-210ENST00000543016 LAMB4A4D0S4 1761 aa15.66■□□□□ 0.1
DDX55-210ENST00000543016 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.65■□□□□ 0.1
DDX55-210ENST00000543016 NBPF26B4DH59 902 aa15.65■□□□□ 0.1
DDX55-210ENST00000543016 NBPF10Q6P3W6 841 aaKnown RBP15.65■□□□□ 0.1
DDX55-210ENST00000543016 NBPF15Q8N660 670 aa15.65■□□□□ 0.1
DDX55-210ENST00000543016 PDIA6Q15084 440 aa15.64■□□□□ 0.09
DDX55-210ENST00000543016 YTHDC1Q96MU7 727 aaKnown RBP15.64■□□□□ 0.09
DDX55-210ENST00000543016 PNPLA7Q6ZV29 1317 aa15.64■□□□□ 0.09
DDX55-210ENST00000543016 MYH14Q7Z406 1995 aaKnown RBP15.64■□□□□ 0.09
DDX55-210ENST00000543016 RFC4P35249 363 aa15.63■□□□□ 0.09
DDX55-210ENST00000543016 ALDH1L2Q3SY69 923 aa15.63■□□□□ 0.09
DDX55-210ENST00000543016 CHPF2Q9P2E5 772 aa15.63■□□□□ 0.09
DDX55-210ENST00000543016 QSER1Q2KHR3 1735 aa15.63■□□□□ 0.09
DDX55-210ENST00000543016 COL15A1P39059 1388 aa15.62■□□□□ 0.09
DDX55-210ENST00000543016 ZPR1O75312 459 aa15.62■□□□□ 0.09
DDX55-210ENST00000543016 R3HDM1Q15032 1099 aaKnown RBP15.62■□□□□ 0.09
DDX55-210ENST00000543016 COL23A1Q86Y22 540 aaPredicted RBP15.62■□□□□ 0.09
DDX55-210ENST00000543016 ARHGEF1Q92888 912 aaKnown RBP15.62■□□□□ 0.09
DDX55-210ENST00000543016 NARFQ9UHQ1 456 aa15.62■□□□□ 0.09
DDX55-210ENST00000543016 ERVV-1B6SEH8 477 aa15.61■□□□□ 0.09
DDX55-210ENST00000543016 PHF14O94880 888 aa15.61■□□□□ 0.09
DDX55-210ENST00000543016 LRP10Q7Z4F1 713 aa15.61■□□□□ 0.09
DDX55-210ENST00000543016 NECTIN2Q92692 538 aa15.61■□□□□ 0.09
DDX55-210ENST00000543016 UBR3Q6ZT12 1888 aa15.61■□□□□ 0.09
DDX55-210ENST00000543016 SLC4A2P04920 1241 aa15.6■□□□□ 0.09
DDX55-210ENST00000543016 MYL6BP14649 208 aa15.6■□□□□ 0.09
DDX55-210ENST00000543016 BRPF1P55201 1214 aaPredicted RBP15.6■□□□□ 0.09
DDX55-210ENST00000543016 CLEC4GQ6UXB4 293 aa15.6■□□□□ 0.09
DDX55-210ENST00000543016 KIF6Q6ZMV9 814 aa15.6■□□□□ 0.09
DDX55-210ENST00000543016 DZIP3Q86Y13 1208 aaKnown RBP15.6■□□□□ 0.09
DDX55-210ENST00000543016 USP42Q9H9J4 1324 aaKnown RBP15.6■□□□□ 0.09
DDX55-210ENST00000543016 DDX58O95786 925 aaKnown RBP15.59■□□□□ 0.09
DDX55-210ENST00000543016 NLGN1Q8N2Q7 840 aa15.59■□□□□ 0.09
DDX55-210ENST00000543016 ZNF652Q9Y2D9 606 aa15.59■□□□□ 0.09
DDX55-210ENST00000543016 ZNF330Q9Y3S2 320 aaPredicted RBP15.59■□□□□ 0.09
DDX55-210ENST00000543016 CACNA1FO60840 1977 aa15.58■□□□□ 0.09
DDX55-210ENST00000543016 PIP4K2AP48426 406 aaPredicted RBP15.58■□□□□ 0.08
DDX55-210ENST00000543016 PROSER3Q2NL68 480 aa15.58■□□□□ 0.08
DDX55-210ENST00000543016 COPS6Q7L5N1 327 aa15.58■□□□□ 0.08
DDX55-210ENST00000543016 AMIGO3Q86WK7 504 aa15.58■□□□□ 0.08
DDX55-210ENST00000543016 HSP90AB3PQ58FF7 597 aa15.57■□□□□ 0.08
DDX55-210ENST00000543016 PLBD2Q8NHP8 589 aa15.57■□□□□ 0.08
DDX55-210ENST00000543016 XAGE3Q8WTP9 111 aa15.57■□□□□ 0.08
DDX55-210ENST00000543016 SSH1Q8WYL5 1049 aa15.57■□□□□ 0.08
DDX55-210ENST00000543016 ARXQ96QS3 562 aa15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms