RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 POLRMTO00411 1230 aaKnown RBP17.4■□□□□ 0.38
CPSF1-204ENST00000529288 KCNA3P22001 575 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 PPP2R1AP30153 589 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 TM4SF1P30408 202 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 BICDL1Q6ZP65 573 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 VSIG10Q8N0Z9 540 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 ZNF496Q96IT1 587 aaPredicted RBP17.4■□□□□ 0.38
CPSF1-204ENST00000529288 NARFQ9UHQ1 456 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 COL15A1P39059 1388 aa17.4■□□□□ 0.38
CPSF1-204ENST00000529288 MRC1P22897 1456 aa17.39■□□□□ 0.37
CPSF1-204ENST00000529288 NFIXQ14938 502 aa17.39■□□□□ 0.37
CPSF1-204ENST00000529288 DALRD3Q5D0E6 543 aaKnown RBP17.39■□□□□ 0.37
CPSF1-204ENST00000529288 ZNF790Q6PG37 636 aa17.39■□□□□ 0.37
CPSF1-204ENST00000529288 ADCY9O60503 1353 aa17.39■□□□□ 0.37
CPSF1-204ENST00000529288 KCPQ6ZWJ8 1503 aa17.38■□□□□ 0.37
CPSF1-204ENST00000529288 RSPH6AQ9H0K4 717 aa17.38■□□□□ 0.37
CPSF1-204ENST00000529288 N4BP2Q86UW6 1770 aaPredicted RBP17.38■□□□□ 0.37
CPSF1-204ENST00000529288 BTBD11A6QL63 1104 aa17.37■□□□□ 0.37
CPSF1-204ENST00000529288 SERPINB2P05120 415 aa17.37■□□□□ 0.37
CPSF1-204ENST00000529288 NPM2Q86SE8 214 aaKnown RBP17.37■□□□□ 0.37
CPSF1-204ENST00000529288 RTF1Q92541 710 aaKnown RBP17.37■□□□□ 0.37
CPSF1-204ENST00000529288 A0A087WZG4 1122 aa17.36■□□□□ 0.37
CPSF1-204ENST00000529288 KCNQ3O43525 872 aa17.36■□□□□ 0.37
CPSF1-204ENST00000529288 FMNL2Q96PY5 1086 aa17.36■□□□□ 0.37
CPSF1-204ENST00000529288 TEX13AQ9BXU3 409 aaPredicted RBP17.36■□□□□ 0.37
CPSF1-204ENST00000529288 BCL2L12Q9HB09 334 aa17.36■□□□□ 0.37
CPSF1-204ENST00000529288 TBC1D2BQ9UPU7 963 aa17.36■□□□□ 0.37
CPSF1-204ENST00000529288 HEG1Q9ULI3 1381 aa17.36■□□□□ 0.37
CPSF1-204ENST00000529288 C9orf131Q5VYM1 1079 aa17.35■□□□□ 0.37
CPSF1-204ENST00000529288 MCM10Q7L590 875 aa17.35■□□□□ 0.37
CPSF1-204ENST00000529288 A1BGP04217 495 aa17.34■□□□□ 0.37
CPSF1-204ENST00000529288 EIF5P55010 431 aaKnown RBP17.34■□□□□ 0.37
CPSF1-204ENST00000529288 DCTN1Q14203 1278 aa17.33■□□□□ 0.36
CPSF1-204ENST00000529288 KIF3CO14782 793 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 TBC1D9BQ66K14 1250 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 C2CD5Q86YS7 1000 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 CCDC24Q8N4L8 307 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 RNF181Q9P0P0 153 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 KIF13BQ9NQT8 1826 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 KIAA1551Q9HCM1 1747 aa17.32■□□□□ 0.36
CPSF1-204ENST00000529288 NPHP1O15259 732 aa17.31■□□□□ 0.36
CPSF1-204ENST00000529288 PIP4K2AP48426 406 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-204ENST00000529288 ADAMTS7Q9UKP4 1686 aa17.3■□□□□ 0.36
CPSF1-204ENST00000529288 H0YIN7 160 aa17.3■□□□□ 0.36
CPSF1-204ENST00000529288 NEFMP07197 916 aa17.3■□□□□ 0.36
CPSF1-204ENST00000529288 IL6STP40189 918 aaPredicted RBP17.3■□□□□ 0.36
CPSF1-204ENST00000529288 NMRK2Q9NPI5 230 aa17.3■□□□□ 0.36
CPSF1-204ENST00000529288 USP16Q9Y5T5 823 aa17.3■□□□□ 0.36
CPSF1-204ENST00000529288 CEMIPQ8WUJ3 1361 aa17.29■□□□□ 0.36
CPSF1-204ENST00000529288 PRAMEF22A3QJZ6 481 aa17.29■□□□□ 0.36
CPSF1-204ENST00000529288 ZNF622Q969S3 477 aaKnown RBP eCLIP17.29■□□□□ 0.36
CPSF1-204ENST00000529288 HSPA6P17066 643 aa17.28■□□□□ 0.36
CPSF1-204ENST00000529288 RASSF7Q02833 373 aa17.28■□□□□ 0.36
CPSF1-204ENST00000529288 DZIP3Q86Y13 1208 aaKnown RBP17.28■□□□□ 0.36
CPSF1-204ENST00000529288 TTLL6Q8N841 843 aa17.28■□□□□ 0.36
CPSF1-204ENST00000529288 MIS18AQ9NYP9 233 aa17.28■□□□□ 0.36
CPSF1-204ENST00000529288 ZNF219Q9P2Y4 722 aaPredicted RBP17.28■□□□□ 0.36
CPSF1-204ENST00000529288 SNRPA1P09661 255 aaKnown RBP17.27■□□□□ 0.36
CPSF1-204ENST00000529288 C16orf71Q8IYS4 520 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-204ENST00000529288 SETDB2Q96T68 719 aa17.27■□□□□ 0.36
CPSF1-204ENST00000529288 CARMIL3Q8ND23 1372 aa17.27■□□□□ 0.35
CPSF1-204ENST00000529288 VIRMAQ69YN4 1812 aaKnown RBP17.26■□□□□ 0.35
CPSF1-204ENST00000529288 CAMTA2O94983 1202 aa17.25■□□□□ 0.35
CPSF1-204ENST00000529288 TAF7Q15545 349 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-204ENST00000529288 PRR5LQ6MZQ0 368 aa17.25■□□□□ 0.35
CPSF1-204ENST00000529288 UBR2Q8IWV8 1755 aa17.25■□□□□ 0.35
CPSF1-204ENST00000529288 HTATSF1O43719 755 aaKnown RBP17.24■□□□□ 0.35
CPSF1-204ENST00000529288 TOMM70O94826 608 aa17.24■□□□□ 0.35
CPSF1-204ENST00000529288 PDE6BP35913 854 aa17.24■□□□□ 0.35
CPSF1-204ENST00000529288 BRIP1Q9BX63 1249 aa17.24■□□□□ 0.35
CPSF1-204ENST00000529288 RRAGCQ9HB90 399 aa17.24■□□□□ 0.35
CPSF1-204ENST00000529288 KDM2BQ8NHM5 1336 aa17.23■□□□□ 0.35
CPSF1-204ENST00000529288 ST5P78524 1137 aa17.23■□□□□ 0.35
CPSF1-204ENST00000529288 NGEFQ8N5V2 710 aa17.23■□□□□ 0.35
CPSF1-204ENST00000529288 CNBD1Q8NA66 436 aa17.23■□□□□ 0.35
CPSF1-204ENST00000529288 FAM177BA6PVY3 158 aa17.22■□□□□ 0.35
CPSF1-204ENST00000529288 C21orf2O43822 256 aa17.22■□□□□ 0.35
CPSF1-204ENST00000529288 LMNB1P20700 586 aa17.21■□□□□ 0.35
CPSF1-204ENST00000529288 THUMPD2Q9BTF0 503 aaKnown RBP17.21■□□□□ 0.35
CPSF1-204ENST00000529288 MAPK8IP3Q9UPT6 1336 aa17.21■□□□□ 0.34
CPSF1-204ENST00000529288 NBPF5PQ86XG9 351 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-204ENST00000529288 PDZRN3Q9UPQ7 1066 aa17.2■□□□□ 0.34
CPSF1-204ENST00000529288 ZNF652Q9Y2D9 606 aa17.2■□□□□ 0.34
CPSF1-204ENST00000529288 BRCA1P38398 1863 aaKnown RBP17.2■□□□□ 0.34
CPSF1-204ENST00000529288 AFDNP55196 1824 aaKnown RBP17.19■□□□□ 0.34
CPSF1-204ENST00000529288 NBPF26B4DH59 902 aa17.19■□□□□ 0.34
CPSF1-204ENST00000529288 NFE2L2Q16236 605 aa17.19■□□□□ 0.34
CPSF1-204ENST00000529288 NBPF10Q6P3W6 841 aaKnown RBP17.19■□□□□ 0.34
CPSF1-204ENST00000529288 NBPF15Q8N660 670 aa17.19■□□□□ 0.34
CPSF1-204ENST00000529288 PNISRQ8TF01 805 aaKnown RBP17.19■□□□□ 0.34
CPSF1-204ENST00000529288 PNNQ9H307 717 aaKnown RBP17.19■□□□□ 0.34
CPSF1-204ENST00000529288 SIPA1L3O60292 1781 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-204ENST00000529288 APLP1P51693 650 aa17.18■□□□□ 0.34
CPSF1-204ENST00000529288 PRELPP51888 382 aa17.18■□□□□ 0.34
CPSF1-204ENST00000529288 PLEKHF1Q96S99 279 aa17.18■□□□□ 0.34
CPSF1-204ENST00000529288 NIP7Q9Y221 180 aaKnown RBP eCLIP17.18■□□□□ 0.34
CPSF1-204ENST00000529288 RRP7AQ9Y3A4 280 aaKnown RBP17.18■□□□□ 0.34
CPSF1-204ENST00000529288 ARFGEF1Q9Y6D6 1849 aa17.18■□□□□ 0.34
CPSF1-204ENST00000529288 NFKBIEO00221 500 aa17.17■□□□□ 0.34
CPSF1-204ENST00000529288 CLEC4GQ6UXB4 293 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms