RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 PNISRQ8TF01 805 aaKnown RBP27.26■■□□□ 1.95
VPS28-206ENST00000526734 TAF7Q15545 349 aaPredicted RBP27.25■■□□□ 1.95
VPS28-206ENST00000526734 PARP3Q9Y6F1 533 aa27.25■■□□□ 1.95
VPS28-206ENST00000526734 A0A087WZG4 1122 aa27.24■■□□□ 1.95
VPS28-206ENST00000526734 DCTN1Q14203 1278 aa27.24■■□□□ 1.95
VPS28-206ENST00000526734 WDR43Q15061 677 aaKnown RBP eCLIP27.23■■□□□ 1.95
VPS28-206ENST00000526734 SRP68Q9UHB9 627 aaKnown RBP27.23■■□□□ 1.95
VPS28-206ENST00000526734 NARFQ9UHQ1 456 aa27.23■■□□□ 1.95
VPS28-206ENST00000526734 GRIN3BO60391 1043 aa27.22■■□□□ 1.95
VPS28-206ENST00000526734 C10orf71Q711Q0 1435 aa27.22■■□□□ 1.95
VPS28-206ENST00000526734 SNRPA1P09661 255 aaKnown RBP27.21■■□□□ 1.95
VPS28-206ENST00000526734 CANXP27824 592 aaKnown RBP27.21■■□□□ 1.95
VPS28-206ENST00000526734 EIF5P55010 431 aaKnown RBP27.21■■□□□ 1.95
VPS28-206ENST00000526734 LMOD3Q0VAK6 560 aa27.21■■□□□ 1.95
VPS28-206ENST00000526734 PELP1Q8IZL8 1130 aaKnown RBP27.21■■□□□ 1.95
VPS28-206ENST00000526734 KCNQ3O43525 872 aa27.2■■□□□ 1.94
VPS28-206ENST00000526734 IL6STP40189 918 aaPredicted RBP27.2■■□□□ 1.94
VPS28-206ENST00000526734 FKBP8Q14318 412 aa27.2■■□□□ 1.94
VPS28-206ENST00000526734 USPL1Q5W0Q7 1092 aa27.19■■□□□ 1.94
VPS28-206ENST00000526734 NPM2Q86SE8 214 aaKnown RBP27.19■■□□□ 1.94
VPS28-206ENST00000526734 DLG5Q8TDM6 1919 aa27.18■■□□□ 1.94
VPS28-206ENST00000526734 TGFB2P61812 414 aa27.18■■□□□ 1.94
VPS28-206ENST00000526734 KIF13BQ9NQT8 1826 aa27.17■■□□□ 1.94
VPS28-206ENST00000526734 ZNF316A6NFI3 1004 aaPredicted RBP27.16■■□□□ 1.94
VPS28-206ENST00000526734 TM4SF1P30408 202 aa27.15■■□□□ 1.94
VPS28-206ENST00000526734 PXDNLA1KZ92 1463 aa27.14■■□□□ 1.94
VPS28-206ENST00000526734 YBX3P16989 372 aaKnown RBP eCLIP27.14■■□□□ 1.94
VPS28-206ENST00000526734 TMPOP42166 694 aaKnown RBP27.14■■□□□ 1.94
VPS28-206ENST00000526734 RIPK4P57078 832 aa27.14■■□□□ 1.94
VPS28-206ENST00000526734 RUNDC1Q96C34 613 aa27.14■■□□□ 1.94
VPS28-206ENST00000526734 POLRMTO00411 1230 aaKnown RBP27.13■■□□□ 1.93
VPS28-206ENST00000526734 DDR1Q08345 913 aa27.13■■□□□ 1.93
VPS28-206ENST00000526734 BABAM1Q9NWV8 329 aa27.13■■□□□ 1.93
VPS28-206ENST00000526734 USP16Q9Y5T5 823 aa27.13■■□□□ 1.93
VPS28-206ENST00000526734 A1BGP04217 495 aa27.12■■□□□ 1.93
VPS28-206ENST00000526734 KDM3BQ7LBC6 1761 aa27.12■■□□□ 1.93
VPS28-206ENST00000526734 BCL2L12Q9HB09 334 aa27.11■■□□□ 1.93
VPS28-206ENST00000526734 CHD4Q14839 1912 aa27.11■■□□□ 1.93
VPS28-206ENST00000526734 NFIXQ14938 502 aa27.1■■□□□ 1.93
VPS28-206ENST00000526734 ZNF330Q9Y3S2 320 aaPredicted RBP27.1■■□□□ 1.93
VPS28-206ENST00000526734 SCN7AQ01118 1682 aa27.1■■□□□ 1.93
VPS28-206ENST00000526734 THUMPD2Q9BTF0 503 aaKnown RBP27.09■■□□□ 1.93
VPS28-206ENST00000526734 ADAMTS8Q9UP79 889 aa27.09■■□□□ 1.93
VPS28-206ENST00000526734 RGL2O15211 777 aa27.08■■□□□ 1.93
VPS28-206ENST00000526734 MIS18AQ9NYP9 233 aa27.08■■□□□ 1.93
VPS28-206ENST00000526734 EIF4A1P60842 406 aaKnown RBP27.07■■□□□ 1.92
VPS28-206ENST00000526734 CCDC146Q8IYE0 955 aa27.07■■□□□ 1.92
VPS28-206ENST00000526734 KIAA1551Q9HCM1 1747 aa27.07■■□□□ 1.92
VPS28-206ENST00000526734 LAMB4A4D0S4 1761 aa27.07■■□□□ 1.92
VPS28-206ENST00000526734 PRAMEF22A3QJZ6 481 aa27.06■■□□□ 1.92
VPS28-206ENST00000526734 GIGYF1O75420 1035 aaPredicted RBP27.06■■□□□ 1.92
VPS28-206ENST00000526734 DZIP3Q86Y13 1208 aaKnown RBP27.06■■□□□ 1.92
VPS28-206ENST00000526734 TSPYL4Q9UJ04 414 aa27.05■■□□□ 1.92
VPS28-206ENST00000526734 TBC1D2BQ9UPU7 963 aa27.05■■□□□ 1.92
VPS28-206ENST00000526734 CAMTA2O94983 1202 aa27.04■■□□□ 1.92
VPS28-206ENST00000526734 SERPINB2P05120 415 aa27.04■■□□□ 1.92
VPS28-206ENST00000526734 NRXN2Q9P2S2 1712 aa27.04■■□□□ 1.92
VPS28-206ENST00000526734 A0A0G2JLW4 131 aa27.03■■□□□ 1.92
VPS28-206ENST00000526734 DPEP1P16444 411 aa27.03■■□□□ 1.92
VPS28-206ENST00000526734 CLEC4GQ6UXB4 293 aa27.03■■□□□ 1.92
VPS28-206ENST00000526734 ZNF652Q9Y2D9 606 aa27.03■■□□□ 1.92
VPS28-206ENST00000526734 CARMIL3Q8ND23 1372 aa27.02■■□□□ 1.92
VPS28-206ENST00000526734 ERBB4Q15303 1308 aa27.02■■□□□ 1.92
VPS28-206ENST00000526734 RRP7AQ9Y3A4 280 aaKnown RBP27.01■■□□□ 1.91
VPS28-206ENST00000526734 BCORQ6W2J9 1755 aa27■■□□□ 1.91
VPS28-206ENST00000526734 NBPF26B4DH59 902 aa27■■□□□ 1.91
VPS28-206ENST00000526734 NEUROD2Q15784 382 aa27■■□□□ 1.91
VPS28-206ENST00000526734 TBC1D9BQ66K14 1250 aa27■■□□□ 1.91
VPS28-206ENST00000526734 NBPF10Q6P3W6 841 aaKnown RBP27■■□□□ 1.91
VPS28-206ENST00000526734 NBPF15Q8N660 670 aa27■■□□□ 1.91
VPS28-206ENST00000526734 PIM2Q9P1W9 311 aa27■■□□□ 1.91
VPS28-206ENST00000526734 ANP32CO43423 234 aa26.99■■□□□ 1.91
VPS28-206ENST00000526734 BICDL1Q6ZP65 573 aa26.99■■□□□ 1.91
VPS28-206ENST00000526734 BCS1LQ9Y276 419 aa26.99■■□□□ 1.91
VPS28-206ENST00000526734 N4BP2Q86UW6 1770 aaPredicted RBP26.99■■□□□ 1.91
VPS28-206ENST00000526734 PIP4K2AP48426 406 aaPredicted RBP26.98■■□□□ 1.91
VPS28-206ENST00000526734 ZNF784Q8NCA9 323 aaPredicted RBP26.98■■□□□ 1.91
VPS28-206ENST00000526734 SETDB2Q96T68 719 aa26.98■■□□□ 1.91
VPS28-206ENST00000526734 TRIM35Q9UPQ4 493 aa26.98■■□□□ 1.91
VPS28-206ENST00000526734 PDZRN3Q9UPQ7 1066 aa26.98■■□□□ 1.91
VPS28-206ENST00000526734 KCNA3P22001 575 aa26.97■■□□□ 1.91
VPS28-206ENST00000526734 WWC3Q9ULE0 1092 aa26.97■■□□□ 1.91
VPS28-206ENST00000526734 AFDNP55196 1824 aaKnown RBP26.97■■□□□ 1.91
VPS28-206ENST00000526734 CHL1O00533 1208 aa26.95■■□□□ 1.9
VPS28-206ENST00000526734 CALD1Q05682 793 aaKnown RBP26.95■■□□□ 1.9
VPS28-206ENST00000526734 DALRD3Q5D0E6 543 aaKnown RBP26.95■■□□□ 1.9
VPS28-206ENST00000526734 BRCA1P38398 1863 aaKnown RBP26.95■■□□□ 1.9
VPS28-206ENST00000526734 BRIP1Q9BX63 1249 aa26.93■■□□□ 1.9
VPS28-206ENST00000526734 UTRNP46939 3433 aa26.92■■□□□ 1.9
VPS28-206ENST00000526734 ERVV-1B6SEH8 477 aa26.92■■□□□ 1.9
VPS28-206ENST00000526734 CHRNA5P30532 468 aa26.92■■□□□ 1.9
VPS28-206ENST00000526734 PRR5LQ6MZQ0 368 aa26.92■■□□□ 1.9
VPS28-206ENST00000526734 CNBD1Q8NA66 436 aa26.92■■□□□ 1.9
VPS28-206ENST00000526734 APAF1O14727 1248 aa26.91■■□□□ 1.9
VPS28-206ENST00000526734 NPHP1O15259 732 aa26.91■■□□□ 1.9
VPS28-206ENST00000526734 PDE6BP35913 854 aa26.91■■□□□ 1.9
VPS28-206ENST00000526734 ST5P78524 1137 aa26.91■■□□□ 1.9
VPS28-206ENST00000526734 KIF6Q6ZMV9 814 aa26.91■■□□□ 1.9
VPS28-206ENST00000526734 H0YIN7 160 aa26.9■■□□□ 1.9
VPS28-206ENST00000526734 CFAP44Q96MT7 982 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms