RNA–Protein interactions for RNA: ENST00000519321.5

SKP1-206, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 692 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-206ENST00000519321 COL23A1Q86Y22 540 aaPredicted RBP29.44■■■□□ 2.3
SKP1-206ENST00000519321 MYH14Q7Z406 1995 aaKnown RBP29.43■■■□□ 2.3
SKP1-206ENST00000519321 MSH5O43196 834 aa29.43■■■□□ 2.3
SKP1-206ENST00000519321 PHF14O94880 888 aa29.43■■■□□ 2.3
SKP1-206ENST00000519321 ZNF853P0CG23 659 aa29.43■■■□□ 2.3
SKP1-206ENST00000519321 TRAPPC3LQ5T215 181 aa29.43■■■□□ 2.3
SKP1-206ENST00000519321 INTS5Q6P9B9 1019 aaKnown RBP29.43■■■□□ 2.3
SKP1-206ENST00000519321 IL16Q14005 1332 aa29.43■■■□□ 2.3
SKP1-206ENST00000519321 PDGFDQ9GZP0 370 aaPredicted RBP29.42■■■□□ 2.3
SKP1-206ENST00000519321 SENP3-EIF4A1A0A087X0R7 540 aa29.41■■■□□ 2.3
SKP1-206ENST00000519321 GIGYF1O75420 1035 aaPredicted RBP29.41■■■□□ 2.3
SKP1-206ENST00000519321 WDR63Q8IWG1 891 aa29.41■■■□□ 2.3
SKP1-206ENST00000519321 MTFR1LQ9H019 292 aa29.41■■■□□ 2.3
SKP1-206ENST00000519321 SALL2Q9Y467 1007 aaPredicted RBP29.41■■■□□ 2.3
SKP1-206ENST00000519321 SPON1Q9HCB6 807 aa29.4■■■□□ 2.3
SKP1-206ENST00000519321 USP16Q9Y5T5 823 aa29.4■■■□□ 2.3
SKP1-206ENST00000519321 ZBTB1Q9Y2K1 713 aa29.39■■■□□ 2.3
SKP1-206ENST00000519321 AMIGO3Q86WK7 504 aa29.38■■■□□ 2.29
SKP1-206ENST00000519321 MBIPQ9NS73 344 aa29.38■■■□□ 2.29
SKP1-206ENST00000519321 LAMB4A4D0S4 1761 aa29.38■■■□□ 2.29
SKP1-206ENST00000519321 PRAMEF22A3QJZ6 481 aa29.37■■■□□ 2.29
SKP1-206ENST00000519321 ZBTB7AO95365 584 aa29.37■■■□□ 2.29
SKP1-206ENST00000519321 SOS1Q07889 1333 aaPredicted RBP29.37■■■□□ 2.29
SKP1-206ENST00000519321 CANXP27824 592 aaKnown RBP29.36■■■□□ 2.29
SKP1-206ENST00000519321 RFC4P35249 363 aa29.36■■■□□ 2.29
SKP1-206ENST00000519321 NPM2Q86SE8 214 aaKnown RBP29.36■■■□□ 2.29
SKP1-206ENST00000519321 ARHGEF1Q92888 912 aaKnown RBP29.36■■■□□ 2.29
SKP1-206ENST00000519321 IL6STP40189 918 aaPredicted RBP29.35■■■□□ 2.29
SKP1-206ENST00000519321 A0A087WZG4 1122 aa29.34■■■□□ 2.29
SKP1-206ENST00000519321 A1BGP04217 495 aa29.34■■■□□ 2.29
SKP1-206ENST00000519321 LRP5O75197 1615 aa29.34■■■□□ 2.29
SKP1-206ENST00000519321 HOXB7P09629 217 aa29.33■■■□□ 2.29
SKP1-206ENST00000519321 SMIM5Q71RC9 77 aa29.33■■■□□ 2.29
SKP1-206ENST00000519321 COL15A1P39059 1388 aa29.32■■■□□ 2.28
SKP1-206ENST00000519321 EIF5P55010 431 aaKnown RBP29.32■■■□□ 2.28
SKP1-206ENST00000519321 ATF5Q9Y2D1 282 aaPredicted RBP29.32■■■□□ 2.28
SKP1-206ENST00000519321 ERBB4Q15303 1308 aa29.31■■■□□ 2.28
SKP1-206ENST00000519321 POLD1P28340 1107 aa29.29■■■□□ 2.28
SKP1-206ENST00000519321 CHMP4AQ9BY43 222 aa29.29■■■□□ 2.28
SKP1-206ENST00000519321 C4AP0C0L4 1744 aa29.28■■■□□ 2.28
SKP1-206ENST00000519321 ZNF521Q96K83 1311 aa29.28■■■□□ 2.28
SKP1-206ENST00000519321 ZPR1O75312 459 aa29.28■■■□□ 2.28
SKP1-206ENST00000519321 USP42Q9H9J4 1324 aaKnown RBP29.27■■■□□ 2.28
SKP1-206ENST00000519321 EIF2S2P20042 333 aaKnown RBP29.27■■■□□ 2.28
SKP1-206ENST00000519321 DUSP27Q5VZP5 1158 aa29.27■■■□□ 2.28
SKP1-206ENST00000519321 NLGN1Q8N2Q7 840 aa29.27■■■□□ 2.28
SKP1-206ENST00000519321 MYH16Q9H6N6 1097 aa29.27■■■□□ 2.28
SKP1-206ENST00000519321 ZNF330Q9Y3S2 320 aaPredicted RBP29.27■■■□□ 2.28
SKP1-206ENST00000519321 COL24A1Q17RW2 1714 aa29.27■■■□□ 2.28
SKP1-206ENST00000519321 KRT24Q2M2I5 525 aa29.26■■■□□ 2.27
SKP1-206ENST00000519321 NARFQ9UHQ1 456 aa29.26■■■□□ 2.27
SKP1-206ENST00000519321 PTGER2P43116 358 aa29.25■■■□□ 2.27
SKP1-206ENST00000519321 TSR2Q969E8 191 aaKnown RBP29.25■■■□□ 2.27
SKP1-206ENST00000519321 NBPF26B4DH59 902 aa29.24■■■□□ 2.27
SKP1-206ENST00000519321 GOLGA2Q08379 1002 aa29.24■■■□□ 2.27
SKP1-206ENST00000519321 NBPF10Q6P3W6 841 aaKnown RBP29.24■■■□□ 2.27
SKP1-206ENST00000519321 NBPF15Q8N660 670 aa29.24■■■□□ 2.27
SKP1-206ENST00000519321 SGIP1Q9BQI5 828 aa29.24■■■□□ 2.27
SKP1-206ENST00000519321 GYS1P13807 737 aa29.23■■■□□ 2.27
SKP1-206ENST00000519321 PIP4K2AP48426 406 aaPredicted RBP29.23■■■□□ 2.27
SKP1-206ENST00000519321 MSL1Q68DK7 614 aa29.23■■■□□ 2.27
SKP1-206ENST00000519321 PPP1R1BQ9UD71 204 aaPredicted RBP29.23■■■□□ 2.27
SKP1-206ENST00000519321 FANCIQ9NVI1 1328 aa29.22■■■□□ 2.27
SKP1-206ENST00000519321 HDGFL1Q5TGJ6 251 aa29.22■■■□□ 2.27
SKP1-206ENST00000519321 SRP68Q9UHB9 627 aaKnown RBP29.22■■■□□ 2.27
SKP1-206ENST00000519321 C8orf58Q8NAV2 365 aa29.21■■■□□ 2.27
SKP1-206ENST00000519321 ARXQ96QS3 562 aa29.21■■■□□ 2.27
SKP1-206ENST00000519321 USPL1Q5W0Q7 1092 aa29.2■■■□□ 2.26
SKP1-206ENST00000519321 DZIP3Q86Y13 1208 aaKnown RBP29.2■■■□□ 2.26
SKP1-206ENST00000519321 E9PSI1 815 aa29.19■■■□□ 2.26
SKP1-206ENST00000519321 TBC1D2BQ9UPU7 963 aa29.19■■■□□ 2.26
SKP1-206ENST00000519321 ELL2O00472 640 aaPredicted RBP29.18■■■□□ 2.26
SKP1-206ENST00000519321 MYL6BP14649 208 aa29.18■■■□□ 2.26
SKP1-206ENST00000519321 NECTIN2Q92692 538 aa29.18■■■□□ 2.26
SKP1-206ENST00000519321 SPINK5Q9NQ38 1064 aaPredicted RBP29.18■■■□□ 2.26
SKP1-206ENST00000519321 DDX21Q9NR30 783 aaKnown RBP eCLIP29.18■■■□□ 2.26
SKP1-206ENST00000519321 RGL2O15211 777 aa29.17■■■□□ 2.26
SKP1-206ENST00000519321 DBF4Q9UBU7 674 aaPredicted RBP29.17■■■□□ 2.26
SKP1-206ENST00000519321 PDIA6Q15084 440 aa29.16■■■□□ 2.26
SKP1-206ENST00000519321 TWISTNBQ3B726 338 aaPredicted RBP29.16■■■□□ 2.26
SKP1-206ENST00000519321 HNRNPUQ00839 825 aaKnown RBP eCLIP29.15■■■□□ 2.26
SKP1-206ENST00000519321 FKBP8Q14318 412 aa29.15■■■□□ 2.26
SKP1-206ENST00000519321 CCDC30Q5VVM6 783 aa29.15■■■□□ 2.26
SKP1-206ENST00000519321 ZNF652Q9Y2D9 606 aa29.15■■■□□ 2.26
SKP1-206ENST00000519321 SCN7AQ01118 1682 aa29.15■■■□□ 2.26
SKP1-206ENST00000519321 CAMTA2O94983 1202 aa29.14■■■□□ 2.26
SKP1-206ENST00000519321 MMP10P09238 476 aa29.14■■■□□ 2.26
SKP1-206ENST00000519321 KIF6Q6ZMV9 814 aa29.14■■■□□ 2.26
SKP1-206ENST00000519321 TSPYL6Q8N831 410 aa29.14■■■□□ 2.26
SKP1-206ENST00000519321 CHPF2Q9P2E5 772 aa29.14■■■□□ 2.26
SKP1-206ENST00000519321 EXOSC9Q06265 439 aaKnown RBP29.13■■■□□ 2.25
SKP1-206ENST00000519321 SLFN5Q08AF3 891 aa29.13■■■□□ 2.25
SKP1-206ENST00000519321 CLEC4GQ6UXB4 293 aa29.13■■■□□ 2.25
SKP1-206ENST00000519321 BCL2L12Q9HB09 334 aa29.13■■■□□ 2.25
SKP1-206ENST00000519321 BCORQ6W2J9 1755 aa29.12■■■□□ 2.25
SKP1-206ENST00000519321 HYPKQ9NX55 129 aa29.12■■■□□ 2.25
SKP1-206ENST00000519321 PARP3Q9Y6F1 533 aa29.12■■■□□ 2.25
SKP1-206ENST00000519321 ERVV-1B6SEH8 477 aa29.11■■■□□ 2.25
SKP1-206ENST00000519321 LRP10Q7Z4F1 713 aa29.11■■■□□ 2.25
SKP1-206ENST00000519321 TM4SF1P30408 202 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms