RNA–Protein interactions for RNA: ENST00000517955.2

ARFGEF1-202, Transcript of ADP ribosylation factor guanine nucleotide exchange factor 1, humanhuman

TSL 2

Gene ARFGEF1, Length 1,235 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARFGEF1-202ENST00000517955 SLC39A6Q13433 755 aa14.79□□□□□ -0.04
ARFGEF1-202ENST00000517955 CICQ96RK0 1608 aaPredicted RBP14.78□□□□□ -0.04
ARFGEF1-202ENST00000517955 VAMP4O75379 141 aa14.78□□□□□ -0.04
ARFGEF1-202ENST00000517955 GIGYF1O75420 1035 aaPredicted RBP14.78□□□□□ -0.04
ARFGEF1-202ENST00000517955 FKBP8Q14318 412 aa14.78□□□□□ -0.04
ARFGEF1-202ENST00000517955 C8orf58Q8NAV2 365 aa14.78□□□□□ -0.04
ARFGEF1-202ENST00000517955 ZNF496Q96IT1 587 aaPredicted RBP14.78□□□□□ -0.04
ARFGEF1-202ENST00000517955 SNRPA1P09661 255 aaKnown RBP14.77□□□□□ -0.05
ARFGEF1-202ENST00000517955 TEX13AQ9BXU3 409 aaPredicted RBP14.77□□□□□ -0.05
ARFGEF1-202ENST00000517955 PALLDQ8WX93 1383 aa14.76□□□□□ -0.05
ARFGEF1-202ENST00000517955 LY75O60449 1722 aa14.76□□□□□ -0.05
ARFGEF1-202ENST00000517955 PLSCR1O15162 318 aa14.76□□□□□ -0.05
ARFGEF1-202ENST00000517955 TRIM37O94972 964 aa14.76□□□□□ -0.05
ARFGEF1-202ENST00000517955 TWISTNBQ3B726 338 aaPredicted RBP14.76□□□□□ -0.05
ARFGEF1-202ENST00000517955 PTF1AQ7RTS3 328 aa14.76□□□□□ -0.05
ARFGEF1-202ENST00000517955 HMGB2P26583 209 aaKnown RBP14.75□□□□□ -0.05
ARFGEF1-202ENST00000517955 TSPYL6Q8N831 410 aa14.75□□□□□ -0.05
ARFGEF1-202ENST00000517955 LOC102724428A0A0B4J2F2 783 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 CENPBP07199 599 aaPredicted RBP14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 BRPF1P55201 1214 aaPredicted RBP14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 SIK1P57059 783 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 KRT24Q2M2I5 525 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 ALDH1L2Q3SY69 923 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 CCDC125Q86Z20 511 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 SLC4A9Q96Q91 983 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 RGPD3A6NKT7 1758 aaPredicted RBP14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 RGPD4Q7Z3J3 1758 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 CACNA1FO60840 1977 aa14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 TNS1Q9HBL0 1735 aaKnown RBP14.74□□□□□ -0.05
ARFGEF1-202ENST00000517955 PTCD1O75127 700 aaKnown RBP14.73□□□□□ -0.05
ARFGEF1-202ENST00000517955 ERBB4Q15303 1308 aa14.72□□□□□ -0.05
ARFGEF1-202ENST00000517955 SLC27A3Q5K4L6 730 aa14.72□□□□□ -0.05
ARFGEF1-202ENST00000517955 CHADLQ6NUI6 762 aa14.72□□□□□ -0.05
ARFGEF1-202ENST00000517955 LAMB4A4D0S4 1761 aa14.72□□□□□ -0.05
ARFGEF1-202ENST00000517955 RARSP54136 660 aaKnown RBP14.71□□□□□ -0.05
ARFGEF1-202ENST00000517955 CCDC30Q5VVM6 783 aa14.71□□□□□ -0.05
ARFGEF1-202ENST00000517955 USP16Q9Y5T5 823 aa14.71□□□□□ -0.05
ARFGEF1-202ENST00000517955 TJP1Q07157 1748 aa14.71□□□□□ -0.05
ARFGEF1-202ENST00000517955 C5P01031 1676 aa14.71□□□□□ -0.06
ARFGEF1-202ENST00000517955 ELL2O00472 640 aaPredicted RBP14.7□□□□□ -0.06
ARFGEF1-202ENST00000517955 STARD3NLO95772 234 aa14.7□□□□□ -0.06
ARFGEF1-202ENST00000517955 RCAN3Q9UKA8 241 aa14.7□□□□□ -0.06
ARFGEF1-202ENST00000517955 PRAMEF22A3QJZ6 481 aa14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 APBA3O96018 575 aa14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 CYP19A1P11511 503 aaPredicted RBP14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 ATP6V1AP38606 617 aa14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 RC3H1Q5TC82 1133 aaKnown RBP14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 HDGFL1Q5TGJ6 251 aa14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 COL5A3P25940 1745 aaPredicted RBP14.69□□□□□ -0.06
ARFGEF1-202ENST00000517955 ITPK1Q13572 414 aa14.68□□□□□ -0.06
ARFGEF1-202ENST00000517955 DNAJC10Q8IXB1 793 aa14.68□□□□□ -0.06
ARFGEF1-202ENST00000517955 SSH1Q8WYL5 1049 aa14.68□□□□□ -0.06
ARFGEF1-202ENST00000517955 DDX21Q9NR30 783 aaKnown RBP eCLIP14.68□□□□□ -0.06
ARFGEF1-202ENST00000517955 DBF4Q9UBU7 674 aaPredicted RBP14.68□□□□□ -0.06
ARFGEF1-202ENST00000517955 RREB1Q92766 1687 aa14.68□□□□□ -0.06
ARFGEF1-202ENST00000517955 TAF1LQ8IZX4 1826 aa14.67□□□□□ -0.06
ARFGEF1-202ENST00000517955 PDIA6Q15084 440 aa14.67□□□□□ -0.06
ARFGEF1-202ENST00000517955 CCNL1Q9UK58 526 aaPredicted RBP14.67□□□□□ -0.06
ARFGEF1-202ENST00000517955 RNF123Q5XPI4 1314 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 CNTNAP4Q9C0A0 1308 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 HAX1O00165 279 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 EIF2S2P20042 333 aaKnown RBP14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 TXNRD1Q16881 649 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 LRP10Q7Z4F1 713 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 MRPL50Q8N5N7 158 aaKnown RBP14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 CAMKK2Q96RR4 588 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 STK31Q9BXU1 1019 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 HYPKQ9NX55 129 aa14.66□□□□□ -0.06
ARFGEF1-202ENST00000517955 SF3B2Q13435 895 aaKnown RBP14.65□□□□□ -0.06
ARFGEF1-202ENST00000517955 ARHGAP45Q92619 1136 aa14.65□□□□□ -0.06
ARFGEF1-202ENST00000517955 LRRC4BQ9NT99 713 aa14.65□□□□□ -0.06
ARFGEF1-202ENST00000517955 MYH14Q7Z406 1995 aaKnown RBP14.65□□□□□ -0.06
ARFGEF1-202ENST00000517955 NBPF26B4DH59 902 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 A1BGP04217 495 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 BAG6P46379 1132 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 NBPF14Q5TI25 921 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 NBPF10Q6P3W6 841 aaKnown RBP14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 INTS5Q6P9B9 1019 aaKnown RBP14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 NBPF15Q8N660 670 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 LINC00116Q8NCU8 138 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 SMC4Q9NTJ3 1288 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 CHPF2Q9P2E5 772 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 KIF16BQ96L93 1317 aa14.64□□□□□ -0.07
ARFGEF1-202ENST00000517955 BCAR3O75815 825 aa14.63□□□□□ -0.07
ARFGEF1-202ENST00000517955 IL6STP40189 918 aaPredicted RBP14.63□□□□□ -0.07
ARFGEF1-202ENST00000517955 CRKLP46109 303 aaKnown RBP14.63□□□□□ -0.07
ARFGEF1-202ENST00000517955 CREBZFQ9NS37 354 aa14.63□□□□□ -0.07
ARFGEF1-202ENST00000517955 CCDC87Q9NVE4 849 aa14.63□□□□□ -0.07
ARFGEF1-202ENST00000517955 PTPRCP08575 1304 aa14.63□□□□□ -0.07
ARFGEF1-202ENST00000517955 EIF5P55010 431 aaKnown RBP14.62□□□□□ -0.07
ARFGEF1-202ENST00000517955 UPF1Q92900 1129 aaKnown RBP eCLIP14.62□□□□□ -0.07
ARFGEF1-202ENST00000517955 C4BP0C0L5 1744 aa14.61□□□□□ -0.07
ARFGEF1-202ENST00000517955 IPO8O15397 1037 aaKnown RBP14.61□□□□□ -0.07
ARFGEF1-202ENST00000517955 EN1Q05925 392 aaPredicted RBP14.61□□□□□ -0.07
ARFGEF1-202ENST00000517955 PROSER3Q2NL68 480 aa14.61□□□□□ -0.07
ARFGEF1-202ENST00000517955 NECTIN2Q92692 538 aa14.61□□□□□ -0.07
ARFGEF1-202ENST00000517955 ZBTB1Q9Y2K1 713 aa14.61□□□□□ -0.07
ARFGEF1-202ENST00000517955 RGL2O15211 777 aa14.6□□□□□ -0.07
ARFGEF1-202ENST00000517955 RPS6KA4O75676 772 aa14.6□□□□□ -0.07
ARFGEF1-202ENST00000517955 FLIIQ13045 1269 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms