RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 ATP6V1AP38606 617 aa10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 MAPK8IP2Q13387 824 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 BCL9LQ86UU0 1499 aa10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 TRMT2AQ8IZ69 625 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 TRIM44Q96DX7 344 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 OVOS2A0A0G2JMS6 1433 aa10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 TRIM27P14373 513 aa10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 KDM6AO15550 1401 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 ZNF772Q68DY9 489 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 ZBTB3Q9H5J0 574 aa10.85□□□□□ -0.67
LIMCH1-209ENST00000509277 PHF14O94880 888 aa10.84□□□□□ -0.67
LIMCH1-209ENST00000509277 KRT27Q7Z3Y8 459 aa10.84□□□□□ -0.67
LIMCH1-209ENST00000509277 RIC3Q7Z5B4 369 aa10.84□□□□□ -0.67
LIMCH1-209ENST00000509277 TMEM57Q8N5G2 664 aa10.84□□□□□ -0.67
LIMCH1-209ENST00000509277 POTEAQ6S8J7 498 aa10.84□□□□□ -0.67
LIMCH1-209ENST00000509277 CDCA7Q9BWT1 371 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-209ENST00000509277 ATF7IPQ6VMQ6 1270 aa10.83□□□□□ -0.67
LIMCH1-209ENST00000509277 THRAP3Q9Y2W1 955 aaKnown RBP10.83□□□□□ -0.67
LIMCH1-209ENST00000509277 COL18A1P39060 1754 aa10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 GIGYF1O75420 1035 aaPredicted RBP10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 SNRPA1P09661 255 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 FAM43AQ8N2R8 423 aa10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 BACH2Q9BYV9 841 aa10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 FLIIQ13045 1269 aa10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 COL14A1Q05707 1796 aaKnown RBP10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 ABCA3Q99758 1704 aa10.83□□□□□ -0.68
LIMCH1-209ENST00000509277 ATP5J2-PTCD1G3V325 749 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 NPHP1O15259 732 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 RBM6P78332 1123 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 MRPL50Q8N5N7 158 aaKnown RBP10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 ATG3Q9NT62 314 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 KIF16BQ96L93 1317 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 PI4KAP2A4QPH2 592 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 ERVV-2B6SEH9 535 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 BICDL1Q6ZP65 573 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 COPS6Q7L5N1 327 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 PI4KAP1Q8N8J0 262 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 PANK2Q9BZ23 570 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 FAM13BQ9NYF5 915 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 TBC1D2BQ9UPU7 963 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 XAGE3Q8WTP9 111 aa10.82□□□□□ -0.68
LIMCH1-209ENST00000509277 SLIT2O94813 1529 aa10.81□□□□□ -0.68
LIMCH1-209ENST00000509277 RGPD1P0DJD0 1748 aa10.81□□□□□ -0.68
LIMCH1-209ENST00000509277 PRDM10Q9NQV6 1147 aa10.81□□□□□ -0.68
LIMCH1-209ENST00000509277 GPTP24298 496 aa10.81□□□□□ -0.68
LIMCH1-209ENST00000509277 BARGINQ6ZT62 677 aa10.81□□□□□ -0.68
LIMCH1-209ENST00000509277 CHMP3Q9Y3E7 222 aa10.81□□□□□ -0.68
LIMCH1-209ENST00000509277 CCDC85AQ96PX6 553 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-209ENST00000509277 DBF4Q9UBU7 674 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-209ENST00000509277 CEMIPQ8WUJ3 1361 aa10.8□□□□□ -0.68
LIMCH1-209ENST00000509277 APBA3O96018 575 aa10.8□□□□□ -0.68
LIMCH1-209ENST00000509277 TPRNQ4KMQ1 711 aa10.8□□□□□ -0.68
LIMCH1-209ENST00000509277 PLCH1Q4KWH8 1693 aa10.8□□□□□ -0.68
LIMCH1-209ENST00000509277 STARD3NLO95772 234 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 MAP3K2Q9Y2U5 619 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 CRYBG1Q9Y4K1 1723 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 LMO7Q8WWI1 1683 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 LOC102724428A0A0B4J2F2 783 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 SIK1P57059 783 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 API5Q9BZZ5 524 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 CCNL1Q9UK58 526 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 CWF19L2Q2TBE0 894 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 MYD88Q99836 296 aa10.79□□□□□ -0.68
LIMCH1-209ENST00000509277 ALDH1L2Q3SY69 923 aa10.78□□□□□ -0.68
LIMCH1-209ENST00000509277 TTLL7Q6ZT98 887 aa10.78□□□□□ -0.68
LIMCH1-209ENST00000509277 C9orf78Q9NZ63 289 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-209ENST00000509277 ZHX1Q9UKY1 873 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-209ENST00000509277 ZBTB1Q9Y2K1 713 aa10.78□□□□□ -0.68
LIMCH1-209ENST00000509277 USP54Q70EL1 1684 aa10.78□□□□□ -0.68
LIMCH1-209ENST00000509277 GOLGA6L3A6NEY3 463 aa10.77□□□□□ -0.68
LIMCH1-209ENST00000509277 SRCAPQ6ZRS2 3230 aa10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 CT47B1P0C2W7 299 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 CCDC24Q8N4L8 307 aa10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 PALLDQ8WX93 1383 aa10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 DDX58O95786 925 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 NEXNQ0ZGT2 675 aa10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 SF3B2Q13435 895 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 MVPQ14764 893 aaKnown RBP10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 BCL11BQ9C0K0 894 aaPredicted RBP10.77□□□□□ -0.69
LIMCH1-209ENST00000509277 TNS2Q63HR2 1409 aa10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 GNPATO15228 680 aa10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 MS4A1P11836 297 aa10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 MEIS3Q99687 375 aa10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 RGS17Q9UGC6 210 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 FAM208AQ9UK61 1670 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 FOXD4L1Q9NU39 408 aa10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 COL22A1Q8NFW1 1626 aaPredicted RBP10.76□□□□□ -0.69
LIMCH1-209ENST00000509277 NKX1-1Q15270 411 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 DNAAF4Q8WXU2 420 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 SLC4A9Q96Q91 983 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 DDX21Q9NR30 783 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 NCAPD2Q15021 1401 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 HEG1Q9ULI3 1381 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 GTF2E1P29083 439 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 KIF6Q6ZMV9 814 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 FAM196AQ6ZSG2 479 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 ANKRD13DQ6ZTN6 518 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 NBPF26B4DH59 902 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 ITPK1Q13572 414 aa10.75□□□□□ -0.69
LIMCH1-209ENST00000509277 NBPF14Q5TI25 921 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms