RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PAPPAQ13219 1627 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 IGSF1Q8N6C5 1336 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 LY75O60449 1722 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 PKD1L3Q7Z443 1732 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 SNPHO15079 494 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 HOXB3P14651 431 aaPredicted RBP10.87□□□□□ -0.67
SCN1A-207ENST00000507401 ZNF827Q17R98 1081 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 MPRIPQ6WCQ1 1025 aa10.87□□□□□ -0.67
SCN1A-207ENST00000507401 CCNL1Q9UK58 526 aaPredicted RBP10.87□□□□□ -0.67
SCN1A-207ENST00000507401 PHKG2P15735 406 aa10.86□□□□□ -0.67
SCN1A-207ENST00000507401 AMOTQ4VCS5 1084 aa10.86□□□□□ -0.67
SCN1A-207ENST00000507401 PLEKHO1Q53GL0 409 aaPredicted RBP10.86□□□□□ -0.67
SCN1A-207ENST00000507401 TFCP2L1Q9NZI6 479 aa10.86□□□□□ -0.67
SCN1A-207ENST00000507401 QSER1Q2KHR3 1735 aa10.85□□□□□ -0.67
SCN1A-207ENST00000507401 HSP90AB1P08238 724 aaKnown RBP10.85□□□□□ -0.67
SCN1A-207ENST00000507401 PIGBQ92521 554 aa10.85□□□□□ -0.67
SCN1A-207ENST00000507401 ZNF316A6NFI3 1004 aaPredicted RBP10.84□□□□□ -0.67
SCN1A-207ENST00000507401 ERVV-2B6SEH9 535 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 IL13P35225 146 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 KCNQ4P56696 695 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 FLAD1Q8NFF5 587 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 DCAF5Q96JK2 942 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 NPC1L1Q9UHC9 1359 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 ITGB4P16144 1822 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 PNPLA7Q6ZV29 1317 aa10.84□□□□□ -0.67
SCN1A-207ENST00000507401 PALLDQ8WX93 1383 aa10.83□□□□□ -0.68
SCN1A-207ENST00000507401 PPP1R37O75864 691 aa10.83□□□□□ -0.68
SCN1A-207ENST00000507401 MTHFSP49914 203 aa10.83□□□□□ -0.68
SCN1A-207ENST00000507401 ARXQ96QS3 562 aa10.83□□□□□ -0.68
SCN1A-207ENST00000507401 TMOD3Q9NYL9 352 aa10.83□□□□□ -0.68
SCN1A-207ENST00000507401 KDRP35968 1356 aa10.82□□□□□ -0.68
SCN1A-207ENST00000507401 SULT6B1Q6IMI4 303 aa10.82□□□□□ -0.68
SCN1A-207ENST00000507401 SYT17Q9BSW7 474 aa10.82□□□□□ -0.68
SCN1A-207ENST00000507401 POLD1P28340 1107 aa10.81□□□□□ -0.68
SCN1A-207ENST00000507401 TOGARAM1Q9Y4F4 1720 aa10.81□□□□□ -0.68
SCN1A-207ENST00000507401 MAP3K5Q99683 1374 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 LOC102724428A0A0B4J2F2 783 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 SIK1P57059 783 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 CC2D1BQ5T0F9 858 aaKnown RBP10.8□□□□□ -0.68
SCN1A-207ENST00000507401 ZNF530Q6P9A1 599 aaPredicted RBP10.8□□□□□ -0.68
SCN1A-207ENST00000507401 COL23A1Q86Y22 540 aaPredicted RBP10.8□□□□□ -0.68
SCN1A-207ENST00000507401 AEBP1Q8IUX7 1158 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 FHDC1Q9C0D6 1143 aaPredicted RBP10.8□□□□□ -0.68
SCN1A-207ENST00000507401 ATG3Q9NT62 314 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 PCDH10Q9P2E7 1040 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 ASAP1Q9ULH1 1129 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 COL24A1Q17RW2 1714 aa10.8□□□□□ -0.68
SCN1A-207ENST00000507401 KIF3CO14782 793 aa10.79□□□□□ -0.68
SCN1A-207ENST00000507401 DIAPH1O60610 1272 aaKnown RBP10.79□□□□□ -0.68
SCN1A-207ENST00000507401 C1orf141Q5JVX7 400 aa10.79□□□□□ -0.68
SCN1A-207ENST00000507401 TAF1LQ8IZX4 1826 aa10.79□□□□□ -0.68
SCN1A-207ENST00000507401 ATP6V1AP38606 617 aa10.78□□□□□ -0.68
SCN1A-207ENST00000507401 CABP4P57796 275 aa10.78□□□□□ -0.68
SCN1A-207ENST00000507401 C5P01031 1676 aa10.78□□□□□ -0.68
SCN1A-207ENST00000507401 SSFA2P28290 1259 aa10.77□□□□□ -0.69
SCN1A-207ENST00000507401 AKAP4Q5JQC9 854 aa10.77□□□□□ -0.69
SCN1A-207ENST00000507401 AK7Q96M32 723 aa10.77□□□□□ -0.69
SCN1A-207ENST00000507401 ANP32EQ9BTT0 268 aa10.77□□□□□ -0.69
SCN1A-207ENST00000507401 TUBGCP6Q96RT7 1819 aa10.77□□□□□ -0.69
SCN1A-207ENST00000507401 ITPK1Q13572 414 aa10.76□□□□□ -0.69
SCN1A-207ENST00000507401 RC3H1Q5TC82 1133 aaKnown RBP10.76□□□□□ -0.69
SCN1A-207ENST00000507401 NFATC2IPQ8NCF5 419 aa10.76□□□□□ -0.69
SCN1A-207ENST00000507401 MARVELD3Q96A59 401 aa10.76□□□□□ -0.69
SCN1A-207ENST00000507401 ZNF831Q5JPB2 1677 aa10.76□□□□□ -0.69
SCN1A-207ENST00000507401 C4BP0C0L5 1744 aa10.75□□□□□ -0.69
SCN1A-207ENST00000507401 LINC00116Q8NCU8 138 aa10.75□□□□□ -0.69
SCN1A-207ENST00000507401 KDM6AO15550 1401 aaPredicted RBP10.75□□□□□ -0.69
SCN1A-207ENST00000507401 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.74□□□□□ -0.69
SCN1A-207ENST00000507401 HMOX1P09601 288 aa10.74□□□□□ -0.69
SCN1A-207ENST00000507401 CFAP53Q96M91 514 aa10.74□□□□□ -0.69
SCN1A-207ENST00000507401 SLC4A9Q96Q91 983 aa10.74□□□□□ -0.69
SCN1A-207ENST00000507401 UBR3Q6ZT12 1888 aa10.73□□□□□ -0.69
SCN1A-207ENST00000507401 YY1P25490 414 aa10.73□□□□□ -0.69
SCN1A-207ENST00000507401 MTHFSDQ2M296 383 aaKnown RBP10.73□□□□□ -0.69
SCN1A-207ENST00000507401 TRAPPC3LQ5T215 181 aa10.73□□□□□ -0.69
SCN1A-207ENST00000507401 CD2APQ9Y5K6 639 aa10.73□□□□□ -0.69
SCN1A-207ENST00000507401 POTEB3A0JP26 581 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 C2orf72A6NCS6 295 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 GNPATO15228 680 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 RNMTO43148 476 aaKnown RBP10.72□□□□□ -0.69
SCN1A-207ENST00000507401 POTEBQ6S5H4 581 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 AMIGO3Q86WK7 504 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 SLC52A2Q9HAB3 445 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 LGR6Q9HBX8 967 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 RTCBQ9Y3I0 505 aaKnown RBP10.72□□□□□ -0.69
SCN1A-207ENST00000507401 SCN11AQ9UI33 1791 aa10.72□□□□□ -0.69
SCN1A-207ENST00000507401 U2SURPO15042 1029 aaKnown RBP10.71□□□□□ -0.69
SCN1A-207ENST00000507401 RPS6KA4O75676 772 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 COL3A1P02461 1466 aaPredicted RBP10.71□□□□□ -0.69
SCN1A-207ENST00000507401 PPP2R1AP30153 589 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 DOK7Q18PE1 504 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 CDAN1Q8IWY9 1227 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 NLGN1Q8N2Q7 840 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 CNTNAP4Q9C0A0 1308 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 NUDCQ9Y266 331 aa10.71□□□□□ -0.69
SCN1A-207ENST00000507401 PTCD1O75127 700 aaKnown RBP10.7□□□□□ -0.7
SCN1A-207ENST00000507401 PHF14O94880 888 aa10.7□□□□□ -0.7
SCN1A-207ENST00000507401 HOXB1P14653 301 aaPredicted RBP10.7□□□□□ -0.7
SCN1A-207ENST00000507401 CNGB1Q14028 1251 aaPredicted RBP10.7□□□□□ -0.7
SCN1A-207ENST00000507401 GPR162Q16538 588 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms