RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PRPF40BQ6NWY9 871 aaKnown RBP16.88■□□□□ 0.29
TCOF1-207ENST00000504761 KCNQ3O43525 872 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 ZPR1O75312 459 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 SAMD1Q6SPF0 538 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-207ENST00000504761 IL17REQ8NFR9 667 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 A2ML1A8K2U0 1454 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 IFIT1P09914 478 aaKnown RBP16.88■□□□□ 0.29
TCOF1-207ENST00000504761 CEP85Q6P2H3 762 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 PLEKHF1Q96S99 279 aa16.88■□□□□ 0.29
TCOF1-207ENST00000504761 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.88■□□□□ 0.291e-6■■■□□ 16.8
TCOF1-207ENST00000504761 BLOC1S2Q6QNY1 142 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 LDHAL6AQ6ZMR3 332 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 CHMP4CQ96CF2 233 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 ECHDC1Q9NTX5 307 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 PRPF40AO75400 957 aaKnown RBP16.87■□□□□ 0.29
TCOF1-207ENST00000504761 VPS53Q5VIR6 699 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 ZNF790Q6PG37 636 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 LMBR1LQ6UX01 489 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 UNC13BO14795 1591 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 RNF17Q9BXT8 1623 aaKnown RBP16.87■□□□□ 0.29
TCOF1-207ENST00000504761 PHF14O94880 888 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 SDSP20132 328 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 GNL3LQ9NVN8 582 aaKnown RBP16.87■□□□□ 0.29
TCOF1-207ENST00000504761 NLRP1Q9C000 1473 aa16.87■□□□□ 0.29
TCOF1-207ENST00000504761 TRAK2O60296 914 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 MARCH6O60337 910 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 MCM2P49736 904 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 ATP2B1P20020 1258 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 LRP2BPQ9P2M1 347 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 FIBPO43427 364 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 CASTP20810 708 aaKnown RBP16.86■□□□□ 0.29
TCOF1-207ENST00000504761 ATP8B2P98198 1209 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 TTC22Q5TAA0 569 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 TBC1D2Q9BYX2 928 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 SHROOM2Q13796 1616 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 BCORL1Q5H9F3 1711 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 TRIM34Q9BYJ4 488 aa16.86■□□□□ 0.29
TCOF1-207ENST00000504761 CEBPZQ03701 1054 aaKnown RBP16.85■□□□□ 0.29
TCOF1-207ENST00000504761 CHAF1AQ13111 956 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-207ENST00000504761 LINS1Q8NG48 757 aa16.85■□□□□ 0.29
TCOF1-207ENST00000504761 TEX13AQ9BXU3 409 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-207ENST00000504761 ZNF652Q9Y2D9 606 aa16.85■□□□□ 0.29
TCOF1-207ENST00000504761 CROCC2H7BZ55 1655 aa16.85■□□□□ 0.29
TCOF1-207ENST00000504761 RAI14Q9P0K7 980 aa16.85■□□□□ 0.29
TCOF1-207ENST00000504761 ATP6V1AP38606 617 aa16.85■□□□□ 0.29
TCOF1-207ENST00000504761 PDE1AP54750 535 aa16.85■□□□□ 0.29
TCOF1-207ENST00000504761 SEC24BO95487 1268 aa16.84■□□□□ 0.29
TCOF1-207ENST00000504761 C8orf34Q49A92 452 aa16.84■□□□□ 0.29
TCOF1-207ENST00000504761 SMC5Q8IY18 1101 aa16.84■□□□□ 0.29
TCOF1-207ENST00000504761 DCTPP1Q9H773 170 aa16.84■□□□□ 0.29
TCOF1-207ENST00000504761 PDRG1Q9NUG6 133 aa16.84■□□□□ 0.29
TCOF1-207ENST00000504761 RNF123Q5XPI4 1314 aa16.83■□□□□ 0.29
TCOF1-207ENST00000504761 HSP90AB3PQ58FF7 597 aa16.83■□□□□ 0.29
TCOF1-207ENST00000504761 CAVIN1Q6NZI2 390 aaKnown RBP16.83■□□□□ 0.29
TCOF1-207ENST00000504761 GOLIM4O00461 696 aa16.83■□□□□ 0.28
TCOF1-207ENST00000504761 ZNF496Q96IT1 587 aaPredicted RBP16.83■□□□□ 0.28
TCOF1-207ENST00000504761 USP19O94966 1318 aa16.83■□□□□ 0.28
TCOF1-207ENST00000504761 KIAA2012Q0VF49 1180 aa16.83■□□□□ 0.28
TCOF1-207ENST00000504761 OTUD7AQ8TE49 926 aaPredicted RBP16.83■□□□□ 0.28
TCOF1-207ENST00000504761 CCDC34Q96HJ3 373 aa16.83■□□□□ 0.28
TCOF1-207ENST00000504761 ANKRD18BA2A2Z9 1011 aa16.82■□□□□ 0.28
TCOF1-207ENST00000504761 RNF214Q8ND24 703 aa16.82■□□□□ 0.28
TCOF1-207ENST00000504761 MAP3K4Q9Y6R4 1608 aa16.82■□□□□ 0.28
TCOF1-207ENST00000504761 DDX21Q9NR30 783 aaKnown RBP eCLIP16.82■□□□□ 0.28
TCOF1-207ENST00000504761 NPHP4O75161 1426 aaPredicted RBP16.82■□□□□ 0.28
TCOF1-207ENST00000504761 AKAP2Q9Y2D5 859 aa16.82■□□□□ 0.28
TCOF1-207ENST00000504761 ALDH1L1O75891 902 aa16.82■□□□□ 0.28
TCOF1-207ENST00000504761 A1BGP04217 495 aa16.82■□□□□ 0.28
TCOF1-207ENST00000504761 DDX46Q7L014 1031 aaKnown RBP16.81■□□□□ 0.28
TCOF1-207ENST00000504761 USP6P35125 1406 aa16.81■□□□□ 0.28
TCOF1-207ENST00000504761 E9PCH4 1651 aa16.81■□□□□ 0.28
TCOF1-207ENST00000504761 CLSTN1O94985 981 aa16.81■□□□□ 0.28
TCOF1-207ENST00000504761 TBC1D32Q96NH3 1257 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 BECN2A8MW95 431 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 TDO2P48775 406 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 SART3Q15020 963 aaKnown RBP16.8■□□□□ 0.28
TCOF1-207ENST00000504761 SYNMO15061 1565 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 TRPM1Q7Z4N2 1603 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 KLHDC4Q8TBB5 520 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 AIDAQ96BJ3 306 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 DDX11Q96FC9 970 aa16.8■□□□□ 0.28
TCOF1-207ENST00000504761 NBPF7P0C2Y1 421 aaPredicted RBP16.79■□□□□ 0.28
TCOF1-207ENST00000504761 SF3B2Q13435 895 aaKnown RBP16.79■□□□□ 0.28
TCOF1-207ENST00000504761 ZNF521Q96K83 1311 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 LARP1BQ659C4 914 aaKnown RBP16.79■□□□□ 0.28
TCOF1-207ENST00000504761 NACAP1Q9BZK3 213 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 PCDH11XQ9BZA7 1347 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 PCDH11YQ9BZA8 1340 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 FAM135BQ49AJ0 1406 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 SPHKAPQ2M3C7 1700 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 EIF4A1P60842 406 aaKnown RBP16.79■□□□□ 0.28
TCOF1-207ENST00000504761 SAFBQ15424 915 aaKnown RBP eCLIP16.79■□□□□ 0.28
TCOF1-207ENST00000504761 SLC52A2Q9HAB3 445 aa16.79■□□□□ 0.28
TCOF1-207ENST00000504761 FERMT3Q86UX7 667 aa16.78■□□□□ 0.28
TCOF1-207ENST00000504761 ARHGEF25Q86VW2 580 aa16.78■□□□□ 0.28
TCOF1-207ENST00000504761 CCDC83Q8IWF9 413 aa16.78■□□□□ 0.28
TCOF1-207ENST00000504761 INSRP06213 1382 aa16.78■□□□□ 0.28
TCOF1-207ENST00000504761 ZNF335Q9H4Z2 1342 aaPredicted RBP16.78■□□□□ 0.28
TCOF1-207ENST00000504761 PDCP20941 246 aa16.78■□□□□ 0.28
TCOF1-207ENST00000504761 ZSCAN25Q6NSZ9 544 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms