RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 IFT57Q9NWB7 429 aa32.81■■■□□ 2.84
LSM6-202ENST00000502781 PRAMEF22A3QJZ6 481 aa32.79■■■□□ 2.84
LSM6-202ENST00000502781 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP32.78■■■□□ 2.84
LSM6-202ENST00000502781 GIGYF1O75420 1035 aaPredicted RBP32.78■■■□□ 2.84
LSM6-202ENST00000502781 GNAI1P63096 354 aa32.78■■■□□ 2.84
LSM6-202ENST00000502781 RTCBQ9Y3I0 505 aaKnown RBP32.78■■■□□ 2.84
LSM6-202ENST00000502781 USP16Q9Y5T5 823 aa32.78■■■□□ 2.84
LSM6-202ENST00000502781 SMIM5Q71RC9 77 aa32.77■■■□□ 2.84
LSM6-202ENST00000502781 LAS1LQ9Y4W2 734 aaKnown RBP32.77■■■□□ 2.84
LSM6-202ENST00000502781 IL16Q14005 1332 aa32.76■■■□□ 2.84
LSM6-202ENST00000502781 ADRA2BP18089 450 aa32.76■■■□□ 2.83
LSM6-202ENST00000502781 SLC16A10Q8TF71 515 aa32.76■■■□□ 2.83
LSM6-202ENST00000502781 MBIPQ9NS73 344 aa32.76■■■□□ 2.83
LSM6-202ENST00000502781 ZBTB1Q9Y2K1 713 aa32.75■■■□□ 2.83
LSM6-202ENST00000502781 SALL2Q9Y467 1007 aaPredicted RBP32.75■■■□□ 2.83
LSM6-202ENST00000502781 WDR63Q8IWG1 891 aa32.74■■■□□ 2.83
LSM6-202ENST00000502781 PHF14O94880 888 aa32.73■■■□□ 2.83
LSM6-202ENST00000502781 SOS1Q07889 1333 aaPredicted RBP32.73■■■□□ 2.83
LSM6-202ENST00000502781 ZNF521Q96K83 1311 aa32.72■■■□□ 2.83
LSM6-202ENST00000502781 TRAPPC3LQ5T215 181 aa32.71■■■□□ 2.83
LSM6-202ENST00000502781 MTFR1LQ9H019 292 aa32.71■■■□□ 2.83
LSM6-202ENST00000502781 ARHGEF1Q92888 912 aaKnown RBP32.7■■■□□ 2.83
LSM6-202ENST00000502781 ZBTB7AO95365 584 aa32.7■■■□□ 2.82
LSM6-202ENST00000502781 A1BGP04217 495 aa32.7■■■□□ 2.82
LSM6-202ENST00000502781 EIF5P55010 431 aaKnown RBP32.68■■■□□ 2.82
LSM6-202ENST00000502781 KRT24Q2M2I5 525 aa32.68■■■□□ 2.82
LSM6-202ENST00000502781 SPON1Q9HCB6 807 aa32.68■■■□□ 2.82
LSM6-202ENST00000502781 MSH5O43196 834 aa32.67■■■□□ 2.82
LSM6-202ENST00000502781 CANXP27824 592 aaKnown RBP32.67■■■□□ 2.82
LSM6-202ENST00000502781 LAMB4A4D0S4 1761 aa32.66■■■□□ 2.82
LSM6-202ENST00000502781 IL6STP40189 918 aaPredicted RBP32.66■■■□□ 2.82
LSM6-202ENST00000502781 SGIP1Q9BQI5 828 aa32.66■■■□□ 2.82
LSM6-202ENST00000502781 COL15A1P39059 1388 aa32.65■■■□□ 2.82
LSM6-202ENST00000502781 NBPF26B4DH59 902 aa32.64■■■□□ 2.82
LSM6-202ENST00000502781 HOXB7P09629 217 aa32.64■■■□□ 2.82
LSM6-202ENST00000502781 NBPF10Q6P3W6 841 aaKnown RBP32.64■■■□□ 2.82
LSM6-202ENST00000502781 NBPF15Q8N660 670 aa32.64■■■□□ 2.82
LSM6-202ENST00000502781 ATF5Q9Y2D1 282 aaPredicted RBP32.64■■■□□ 2.82
LSM6-202ENST00000502781 LRP5O75197 1615 aa32.64■■■□□ 2.82
LSM6-202ENST00000502781 RFC4P35249 363 aa32.63■■■□□ 2.81
LSM6-202ENST00000502781 PTGER2P43116 358 aa32.63■■■□□ 2.81
LSM6-202ENST00000502781 TSR2Q969E8 191 aaKnown RBP32.62■■■□□ 2.81
LSM6-202ENST00000502781 SPINK5Q9NQ38 1064 aaPredicted RBP32.62■■■□□ 2.81
LSM6-202ENST00000502781 COL24A1Q17RW2 1714 aa32.62■■■□□ 2.81
LSM6-202ENST00000502781 ERBB4Q15303 1308 aa32.6■■■□□ 2.81
LSM6-202ENST00000502781 USP42Q9H9J4 1324 aaKnown RBP32.6■■■□□ 2.81
LSM6-202ENST00000502781 C4AP0C0L4 1744 aa32.6■■■□□ 2.81
LSM6-202ENST00000502781 SRCAPQ6ZRS2 3230 aa32.59■■■□□ 2.81
LSM6-202ENST00000502781 PIP4K2AP48426 406 aaPredicted RBP32.59■■■□□ 2.81
LSM6-202ENST00000502781 DUSP27Q5VZP5 1158 aa32.59■■■□□ 2.81
LSM6-202ENST00000502781 FANCIQ9NVI1 1328 aa32.58■■■□□ 2.81
LSM6-202ENST00000502781 A0A087WZG4 1122 aa32.58■■■□□ 2.81
LSM6-202ENST00000502781 GYS1P13807 737 aa32.58■■■□□ 2.81
LSM6-202ENST00000502781 C8orf58Q8NAV2 365 aa32.58■■■□□ 2.81
LSM6-202ENST00000502781 NARFQ9UHQ1 456 aa32.58■■■□□ 2.81
LSM6-202ENST00000502781 EIF2S2P20042 333 aaKnown RBP32.57■■■□□ 2.8
LSM6-202ENST00000502781 SRP68Q9UHB9 627 aaKnown RBP32.57■■■□□ 2.8
LSM6-202ENST00000502781 PDIA6Q15084 440 aa32.56■■■□□ 2.8
LSM6-202ENST00000502781 MSL1Q68DK7 614 aa32.56■■■□□ 2.8
LSM6-202ENST00000502781 LRP10Q7Z4F1 713 aa32.55■■■□□ 2.8
LSM6-202ENST00000502781 NLGN1Q8N2Q7 840 aa32.54■■■□□ 2.8
LSM6-202ENST00000502781 MYH16Q9H6N6 1097 aa32.54■■■□□ 2.8
LSM6-202ENST00000502781 ZPR1O75312 459 aa32.53■■■□□ 2.8
LSM6-202ENST00000502781 GOLGA2Q08379 1002 aa32.53■■■□□ 2.8
LSM6-202ENST00000502781 TSPYL6Q8N831 410 aa32.53■■■□□ 2.8
LSM6-202ENST00000502781 ZNF330Q9Y3S2 320 aaPredicted RBP32.53■■■□□ 2.8
LSM6-202ENST00000502781 HDGFL1Q5TGJ6 251 aa32.52■■■□□ 2.8
LSM6-202ENST00000502781 USPL1Q5W0Q7 1092 aa32.52■■■□□ 2.8
LSM6-202ENST00000502781 BCL2L12Q9HB09 334 aa32.52■■■□□ 2.8
LSM6-202ENST00000502781 ELL2O00472 640 aaPredicted RBP32.51■■■□□ 2.79
LSM6-202ENST00000502781 TBC1D2BQ9UPU7 963 aa32.51■■■□□ 2.79
LSM6-202ENST00000502781 POLD1P28340 1107 aa32.5■■■□□ 2.79
LSM6-202ENST00000502781 NPM2Q86SE8 214 aaKnown RBP32.5■■■□□ 2.79
LSM6-202ENST00000502781 CAMTA2O94983 1202 aa32.49■■■□□ 2.79
LSM6-202ENST00000502781 FKBP8Q14318 412 aa32.49■■■□□ 2.79
LSM6-202ENST00000502781 PROSER3Q2NL68 480 aa32.49■■■□□ 2.79
LSM6-202ENST00000502781 DZIP3Q86Y13 1208 aaKnown RBP32.49■■■□□ 2.79
LSM6-202ENST00000502781 E9PSI1 815 aa32.48■■■□□ 2.79
LSM6-202ENST00000502781 NECTIN2Q92692 538 aa32.48■■■□□ 2.79
LSM6-202ENST00000502781 DDX21Q9NR30 783 aaKnown RBP eCLIP32.48■■■□□ 2.79
LSM6-202ENST00000502781 MYL6BP14649 208 aa32.47■■■□□ 2.79
LSM6-202ENST00000502781 SLFN5Q08AF3 891 aa32.47■■■□□ 2.79
LSM6-202ENST00000502781 RGL2O15211 777 aa32.46■■■□□ 2.79
LSM6-202ENST00000502781 TWISTNBQ3B726 338 aaPredicted RBP32.46■■■□□ 2.79
LSM6-202ENST00000502781 CHPF2Q9P2E5 772 aa32.46■■■□□ 2.79
LSM6-202ENST00000502781 EXOSC9Q06265 439 aaKnown RBP32.45■■■□□ 2.79
LSM6-202ENST00000502781 ARXQ96QS3 562 aa32.45■■■□□ 2.79
LSM6-202ENST00000502781 CHMP4AQ9BY43 222 aa32.45■■■□□ 2.79
LSM6-202ENST00000502781 DBF4Q9UBU7 674 aaPredicted RBP32.45■■■□□ 2.79
LSM6-202ENST00000502781 SCN7AQ01118 1682 aa32.45■■■□□ 2.78
LSM6-202ENST00000502781 ANXA1P04083 346 aa32.45■■■□□ 2.78
LSM6-202ENST00000502781 HNRNPUQ00839 825 aaKnown RBP eCLIP32.45■■■□□ 2.78
LSM6-202ENST00000502781 TRMT2AQ8IZ69 625 aaKnown RBP32.45■■■□□ 2.78
LSM6-202ENST00000502781 MMP10P09238 476 aa32.44■■■□□ 2.78
LSM6-202ENST00000502781 TM4SF1P30408 202 aa32.44■■■□□ 2.78
LSM6-202ENST00000502781 CDCA7LQ96GN5 454 aa32.44■■■□□ 2.78
LSM6-202ENST00000502781 CLEC4GQ6UXB4 293 aa32.42■■■□□ 2.78
LSM6-202ENST00000502781 TTLL7Q6ZT98 887 aa32.42■■■□□ 2.78
LSM6-202ENST00000502781 VAMP4O75379 141 aa32.41■■■□□ 2.78
LSM6-202ENST00000502781 CCDC30Q5VVM6 783 aa32.41■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms