RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-231ENST00000488905 ARHGAP27Q6ZUM4 889 aa24.86■■□□□ 1.57
HDAC6-231ENST00000488905 ZBTB1Q9Y2K1 713 aa24.86■■□□□ 1.57
HDAC6-231ENST00000488905 SCN7AQ01118 1682 aa24.85■■□□□ 1.57
HDAC6-231ENST00000488905 VSIG10Q8N0Z9 540 aa24.85■■□□□ 1.57
HDAC6-231ENST00000488905 KIF3CO14782 793 aa24.84■■□□□ 1.57
HDAC6-231ENST00000488905 U2SURPO15042 1029 aaKnown RBP24.84■■□□□ 1.57
HDAC6-231ENST00000488905 TM4SF1P30408 202 aa24.84■■□□□ 1.57
HDAC6-231ENST00000488905 CNGB1Q14028 1251 aaPredicted RBP24.84■■□□□ 1.57
HDAC6-231ENST00000488905 PIM2Q9P1W9 311 aa24.84■■□□□ 1.57
HDAC6-231ENST00000488905 HSPA6P17066 643 aa24.82■■□□□ 1.56
HDAC6-231ENST00000488905 NARFQ9UHQ1 456 aa24.82■■□□□ 1.56
HDAC6-231ENST00000488905 DALRD3Q5D0E6 543 aaKnown RBP24.81■■□□□ 1.56
HDAC6-231ENST00000488905 TTC5Q8N0Z6 440 aa24.81■■□□□ 1.56
HDAC6-231ENST00000488905 GAS2L2Q8NHY3 880 aa24.81■■□□□ 1.56
HDAC6-231ENST00000488905 CHRNA5P30532 468 aa24.8■■□□□ 1.56
HDAC6-231ENST00000488905 GNAT3A8MTJ3 354 aa24.79■■□□□ 1.56
HDAC6-231ENST00000488905 NFIXQ14938 502 aa24.79■■□□□ 1.56
HDAC6-231ENST00000488905 TEFQ10587 303 aa24.78■■□□□ 1.56
HDAC6-231ENST00000488905 BCL2L12Q9HB09 334 aa24.78■■□□□ 1.56
HDAC6-231ENST00000488905 ANKRD31Q8N7Z5 1873 aa24.77■■□□□ 1.56
HDAC6-231ENST00000488905 C9orf131Q5VYM1 1079 aa24.77■■□□□ 1.56
HDAC6-231ENST00000488905 TNRC6CQ9HCJ0 1690 aaKnown RBP24.77■■□□□ 1.56
HDAC6-231ENST00000488905 HEG1Q9ULI3 1381 aa24.77■■□□□ 1.56
HDAC6-231ENST00000488905 BCORQ6W2J9 1755 aa24.76■■□□□ 1.55
HDAC6-231ENST00000488905 STARD3NLO95772 234 aa24.76■■□□□ 1.55
HDAC6-231ENST00000488905 CANXP27824 592 aaKnown RBP24.76■■□□□ 1.55
HDAC6-231ENST00000488905 IL17REQ8NFR9 667 aa24.76■■□□□ 1.55
HDAC6-231ENST00000488905 CEMIPQ8WUJ3 1361 aa24.76■■□□□ 1.55
HDAC6-231ENST00000488905 ZNF790Q6PG37 636 aa24.75■■□□□ 1.55
HDAC6-231ENST00000488905 ZNF496Q96IT1 587 aaPredicted RBP24.75■■□□□ 1.55
HDAC6-231ENST00000488905 CCDC88AQ3V6T2 1871 aa24.75■■□□□ 1.55
HDAC6-231ENST00000488905 COL11A2P13942 1736 aaPredicted RBP24.73■■□□□ 1.55
HDAC6-231ENST00000488905 TIAM2Q8IVF5 1701 aa24.73■■□□□ 1.55
HDAC6-231ENST00000488905 EIF5P55010 431 aaKnown RBP24.73■■□□□ 1.55
HDAC6-231ENST00000488905 CFAP53Q96M91 514 aa24.73■■□□□ 1.55
HDAC6-231ENST00000488905 NMRK2Q9NPI5 230 aa24.73■■□□□ 1.55
HDAC6-231ENST00000488905 CARMIL3Q8ND23 1372 aa24.72■■□□□ 1.55
HDAC6-231ENST00000488905 SERPINB2P05120 415 aa24.72■■□□□ 1.55
HDAC6-231ENST00000488905 PRKAR2BP31323 418 aa24.72■■□□□ 1.55
HDAC6-231ENST00000488905 RSPH6AQ9H0K4 717 aa24.72■■□□□ 1.55
HDAC6-231ENST00000488905 A0A087WZG4 1122 aa24.71■■□□□ 1.55
HDAC6-231ENST00000488905 TOMM70O94826 608 aa24.71■■□□□ 1.55
HDAC6-231ENST00000488905 RNF181Q9P0P0 153 aa24.71■■□□□ 1.55
HDAC6-231ENST00000488905 PHACTR3Q96KR7 559 aa24.7■■□□□ 1.54
HDAC6-231ENST00000488905 TEX13AQ9BXU3 409 aaPredicted RBP24.7■■□□□ 1.54
HDAC6-231ENST00000488905 FMNL2Q96PY5 1086 aa24.69■■□□□ 1.54
HDAC6-231ENST00000488905 WDR90Q96KV7 1748 aa24.69■■□□□ 1.54
HDAC6-231ENST00000488905 CACNA1SQ13698 1873 aa24.68■■□□□ 1.54
HDAC6-231ENST00000488905 IL6STP40189 918 aaPredicted RBP24.67■■□□□ 1.54
HDAC6-231ENST00000488905 BICDL1Q6ZP65 573 aa24.67■■□□□ 1.54
HDAC6-231ENST00000488905 NUDCQ9Y266 331 aa24.67■■□□□ 1.54
HDAC6-231ENST00000488905 ZNF330Q9Y3S2 320 aaPredicted RBP24.67■■□□□ 1.54
HDAC6-231ENST00000488905 KDM2BQ8NHM5 1336 aa24.66■■□□□ 1.54
HDAC6-231ENST00000488905 RASSF7Q02833 373 aa24.66■■□□□ 1.54
HDAC6-231ENST00000488905 TBC1D9BQ66K14 1250 aa24.66■■□□□ 1.54
HDAC6-231ENST00000488905 DLG5Q8TDM6 1919 aa24.66■■□□□ 1.54
HDAC6-231ENST00000488905 ARFGEF2Q9Y6D5 1785 aa24.65■■□□□ 1.54
HDAC6-231ENST00000488905 BTBD11A6QL63 1104 aa24.65■■□□□ 1.54
HDAC6-231ENST00000488905 PPP2R1AP30153 589 aa24.65■■□□□ 1.54
HDAC6-231ENST00000488905 C2CD5Q86YS7 1000 aa24.65■■□□□ 1.54
HDAC6-231ENST00000488905 DICER1Q9UPY3 1922 aaKnown RBP24.65■■□□□ 1.54
HDAC6-231ENST00000488905 ZC3H4Q9UPT8 1303 aaKnown RBP24.64■■□□□ 1.54
HDAC6-231ENST00000488905 FER1L6Q2WGJ9 1857 aa24.64■■□□□ 1.54
HDAC6-231ENST00000488905 APLP1P51693 650 aa24.64■■□□□ 1.54
HDAC6-231ENST00000488905 TTLL6Q8N841 843 aa24.64■■□□□ 1.54
HDAC6-231ENST00000488905 TBC1D2BQ9UPU7 963 aa24.64■■□□□ 1.54
HDAC6-231ENST00000488905 LAMB4A4D0S4 1761 aa24.64■■□□□ 1.53
HDAC6-231ENST00000488905 H0YIN7 160 aa24.63■■□□□ 1.53
HDAC6-231ENST00000488905 KCNQ3O43525 872 aa24.63■■□□□ 1.53
HDAC6-231ENST00000488905 U2AF1L5P0DN76 240 aaPredicted RBP24.63■■□□□ 1.53
HDAC6-231ENST00000488905 U2AF1Q01081 240 aaKnown RBP eCLIP24.63■■□□□ 1.53
HDAC6-231ENST00000488905 RBM46Q8TBY0 533 aaKnown RBP24.63■■□□□ 1.53
HDAC6-231ENST00000488905 A1BGP04217 495 aa24.62■■□□□ 1.53
HDAC6-231ENST00000488905 C16orf71Q8IYS4 520 aaPredicted RBP24.62■■□□□ 1.53
HDAC6-231ENST00000488905 NPM2Q86SE8 214 aaKnown RBP24.61■■□□□ 1.53
HDAC6-231ENST00000488905 CAMTA2O94983 1202 aa24.6■■□□□ 1.53
HDAC6-231ENST00000488905 LMNB1P20700 586 aa24.6■■□□□ 1.53
HDAC6-231ENST00000488905 PRR5LQ6MZQ0 368 aa24.6■■□□□ 1.53
HDAC6-231ENST00000488905 RTF1Q92541 710 aaKnown RBP24.6■■□□□ 1.53
HDAC6-231ENST00000488905 MCM10Q7L590 875 aa24.59■■□□□ 1.53
HDAC6-231ENST00000488905 BRIP1Q9BX63 1249 aa24.59■■□□□ 1.53
HDAC6-231ENST00000488905 KDM3BQ7LBC6 1761 aa24.58■■□□□ 1.53
HDAC6-231ENST00000488905 PDE6BP35913 854 aa24.58■■□□□ 1.53
HDAC6-231ENST00000488905 PRELPP51888 382 aa24.58■■□□□ 1.53
HDAC6-231ENST00000488905 PDZRN3Q9UPQ7 1066 aa24.58■■□□□ 1.53
HDAC6-231ENST00000488905 SLX4Q8IY92 1834 aa24.58■■□□□ 1.53
HDAC6-231ENST00000488905 NFKBIEO00221 500 aa24.57■■□□□ 1.52
HDAC6-231ENST00000488905 DZIP3Q86Y13 1208 aaKnown RBP24.57■■□□□ 1.52
HDAC6-231ENST00000488905 CNBD1Q8NA66 436 aa24.57■■□□□ 1.52
HDAC6-231ENST00000488905 RRAGCQ9HB90 399 aa24.57■■□□□ 1.52
HDAC6-231ENST00000488905 USP16Q9Y5T5 823 aa24.57■■□□□ 1.52
HDAC6-231ENST00000488905 PCNTO95613 3336 aa24.57■■□□□ 1.52
HDAC6-231ENST00000488905 PRAMEF22A3QJZ6 481 aa24.56■■□□□ 1.52
HDAC6-231ENST00000488905 FSTL1Q12841 308 aa24.56■■□□□ 1.52
HDAC6-231ENST00000488905 CCDC24Q8N4L8 307 aa24.56■■□□□ 1.52
HDAC6-231ENST00000488905 SETDB2Q96T68 719 aa24.56■■□□□ 1.52
HDAC6-231ENST00000488905 SNRPA1P09661 255 aaKnown RBP24.55■■□□□ 1.52
HDAC6-231ENST00000488905 PIP4K2AP48426 406 aaPredicted RBP24.55■■□□□ 1.52
HDAC6-231ENST00000488905 ZNF622Q969S3 477 aaKnown RBP eCLIP24.55■■□□□ 1.526e-6■□□□□ 8.8
HDAC6-231ENST00000488905 NPHP1O15259 732 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms