RNA–Protein interactions for RNA: ENST00000488897.5

COL16A1-215, Transcript of collagen type XVI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL16A1, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL16A1-215ENST00000488897 ATG3Q9NT62 314 aa22.98■■□□□ 1.27
COL16A1-215ENST00000488897 HTATSF1O43719 755 aaKnown RBP22.98■■□□□ 1.27
COL16A1-215ENST00000488897 FAM196AQ6ZSG2 479 aa22.98■■□□□ 1.27
COL16A1-215ENST00000488897 TBC1D32Q96NH3 1257 aa22.98■■□□□ 1.27
COL16A1-215ENST00000488897 RBM42Q9BTD8 480 aaKnown RBP22.98■■□□□ 1.27
COL16A1-215ENST00000488897 PIP4K2AP48426 406 aaPredicted RBP22.97■■□□□ 1.27
COL16A1-215ENST00000488897 ERVV-2B6SEH9 535 aa22.97■■□□□ 1.27
COL16A1-215ENST00000488897 DDX19BQ9UMR2 479 aa22.97■■□□□ 1.27
COL16A1-215ENST00000488897 C8orf58Q8NAV2 365 aa22.96■■□□□ 1.27
COL16A1-215ENST00000488897 ZNF496Q96IT1 587 aaPredicted RBP22.96■■□□□ 1.27
COL16A1-215ENST00000488897 CFAP44Q96MT7 982 aa22.96■■□□□ 1.27
COL16A1-215ENST00000488897 SMIM5Q71RC9 77 aa22.96■■□□□ 1.27
COL16A1-215ENST00000488897 CHL1O00533 1208 aa22.95■■□□□ 1.26
COL16A1-215ENST00000488897 ZNF853P0CG23 659 aa22.95■■□□□ 1.26
COL16A1-215ENST00000488897 ZNF790Q6PG37 636 aa22.95■■□□□ 1.26
COL16A1-215ENST00000488897 SLC4A9Q96Q91 983 aa22.95■■□□□ 1.26
COL16A1-215ENST00000488897 HDAC1Q13547 482 aaPredicted RBP22.94■■□□□ 1.26
COL16A1-215ENST00000488897 BCL9O00512 1426 aa22.94■■□□□ 1.26
COL16A1-215ENST00000488897 TRIM27P14373 513 aa22.94■■□□□ 1.26
COL16A1-215ENST00000488897 ATF7IPQ6VMQ6 1270 aa22.94■■□□□ 1.26
COL16A1-215ENST00000488897 SSH1Q8WYL5 1049 aa22.94■■□□□ 1.26
COL16A1-215ENST00000488897 DEFB132Q7Z7B7 95 aa22.93■■□□□ 1.26
COL16A1-215ENST00000488897 SBF2Q86WG5 1849 aa22.92■■□□□ 1.26
COL16A1-215ENST00000488897 APBA3O96018 575 aa22.92■■□□□ 1.26
COL16A1-215ENST00000488897 IFT57Q9NWB7 429 aa22.92■■□□□ 1.26
COL16A1-215ENST00000488897 GNAI1P63096 354 aa22.91■■□□□ 1.26
COL16A1-215ENST00000488897 ADAMTS7Q9UKP4 1686 aa22.9■■□□□ 1.26
COL16A1-215ENST00000488897 IPO8O15397 1037 aaKnown RBP22.9■■□□□ 1.26
COL16A1-215ENST00000488897 EIF2S2P20042 333 aaKnown RBP22.9■■□□□ 1.26
COL16A1-215ENST00000488897 ITPRIPQ8IWB1 547 aa22.9■■□□□ 1.26
COL16A1-215ENST00000488897 TTC5Q8N0Z6 440 aa22.9■■□□□ 1.26
COL16A1-215ENST00000488897 EIF4A1P60842 406 aaKnown RBP22.9■■□□□ 1.26
COL16A1-215ENST00000488897 EN1Q05925 392 aaPredicted RBP22.9■■□□□ 1.26
COL16A1-215ENST00000488897 BCL11BQ9C0K0 894 aaPredicted RBP22.89■■□□□ 1.26
COL16A1-215ENST00000488897 NOB1Q9ULX3 412 aaKnown RBP22.89■■□□□ 1.26
COL16A1-215ENST00000488897 KIF16BQ96L93 1317 aa22.89■■□□□ 1.25
COL16A1-215ENST00000488897 ANXA1P04083 346 aa22.89■■□□□ 1.25
COL16A1-215ENST00000488897 USP16Q9Y5T5 823 aa22.89■■□□□ 1.25
COL16A1-215ENST00000488897 SIPA1L3O60292 1781 aaPredicted RBP22.88■■□□□ 1.25
COL16A1-215ENST00000488897 GOLGB1Q14789 3259 aaKnown RBP22.88■■□□□ 1.25
COL16A1-215ENST00000488897 SLKQ9H2G2 1235 aaPredicted RBP22.88■■□□□ 1.25
COL16A1-215ENST00000488897 BTAF1O14981 1849 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 PROM2Q8N271 834 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 ANTXR1Q9H6X2 564 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 LRRC4BQ9NT99 713 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 ALDH1L2Q3SY69 923 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 TBC1D2Q9BYX2 928 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 PALLDQ8WX93 1383 aa22.87■■□□□ 1.25
COL16A1-215ENST00000488897 SMC5Q8IY18 1101 aa22.86■■□□□ 1.25
COL16A1-215ENST00000488897 MRC1P22897 1456 aa22.86■■□□□ 1.25
COL16A1-215ENST00000488897 PLEKHG2Q9H7P9 1386 aa22.86■■□□□ 1.25
COL16A1-215ENST00000488897 DNAJC10Q8IXB1 793 aa22.86■■□□□ 1.25
COL16A1-215ENST00000488897 BRPF3Q9ULD4 1205 aa22.86■■□□□ 1.25
COL16A1-215ENST00000488897 ATP6V1AP38606 617 aa22.85■■□□□ 1.25
COL16A1-215ENST00000488897 ITPK1Q13572 414 aa22.85■■□□□ 1.25
COL16A1-215ENST00000488897 EZH2Q15910 746 aaKnown RBP22.84■■□□□ 1.25
COL16A1-215ENST00000488897 ZNF428Q96B54 188 aa22.84■■□□□ 1.25
COL16A1-215ENST00000488897 CALD1Q05682 793 aaKnown RBP22.84■■□□□ 1.25
COL16A1-215ENST00000488897 TMEM57Q8N5G2 664 aa22.84■■□□□ 1.25
COL16A1-215ENST00000488897 ZBTB40Q9NUA8 1239 aa22.84■■□□□ 1.25
COL16A1-215ENST00000488897 LOC102724428A0A0B4J2F2 783 aa22.83■■□□□ 1.25
COL16A1-215ENST00000488897 SIK1P57059 783 aa22.83■■□□□ 1.25
COL16A1-215ENST00000488897 GIGYF1O75420 1035 aaPredicted RBP22.82■■□□□ 1.24
COL16A1-215ENST00000488897 TWISTNBQ3B726 338 aaPredicted RBP22.82■■□□□ 1.24
COL16A1-215ENST00000488897 C22orf23Q9BZE7 217 aa22.82■■□□□ 1.24
COL16A1-215ENST00000488897 NHSQ6T4R5 1651 aa22.82■■□□□ 1.24
COL16A1-215ENST00000488897 A1BGP04217 495 aa22.82■■□□□ 1.24
COL16A1-215ENST00000488897 RTN4Q9NQC3 1192 aaKnown RBP22.82■■□□□ 1.24
COL16A1-215ENST00000488897 ZNF330Q9Y3S2 320 aaPredicted RBP22.82■■□□□ 1.24
COL16A1-215ENST00000488897 FMNL2Q96PY5 1086 aa22.81■■□□□ 1.24
COL16A1-215ENST00000488897 BRPF1P55201 1214 aaPredicted RBP22.81■■□□□ 1.24
COL16A1-215ENST00000488897 KCPQ6ZWJ8 1503 aa22.81■■□□□ 1.24
COL16A1-215ENST00000488897 PROSER3Q2NL68 480 aa22.8■■□□□ 1.24
COL16A1-215ENST00000488897 AMIGO3Q86WK7 504 aa22.8■■□□□ 1.24
COL16A1-215ENST00000488897 CCNL1Q9UK58 526 aaPredicted RBP22.8■■□□□ 1.24
COL16A1-215ENST00000488897 KDM3BQ7LBC6 1761 aa22.8■■□□□ 1.24
COL16A1-215ENST00000488897 VAMP4O75379 141 aa22.79■■□□□ 1.24
COL16A1-215ENST00000488897 MYL6BP14649 208 aa22.79■■□□□ 1.24
COL16A1-215ENST00000488897 UPF1Q92900 1129 aaKnown RBP eCLIP22.79■■□□□ 1.24
COL16A1-215ENST00000488897 TXNRD1Q16881 649 aa22.78■■□□□ 1.24
COL16A1-215ENST00000488897 LINC00116Q8NCU8 138 aa22.78■■□□□ 1.24
COL16A1-215ENST00000488897 CHMP4BQ9H444 224 aaKnown RBP22.78■■□□□ 1.24
COL16A1-215ENST00000488897 HEG1Q9ULI3 1381 aa22.78■■□□□ 1.24
COL16A1-215ENST00000488897 MFAP1P55081 439 aaKnown RBP22.78■■□□□ 1.24
COL16A1-215ENST00000488897 NUCB1Q02818 461 aa22.76■■□□□ 1.23
COL16A1-215ENST00000488897 ARXQ96QS3 562 aa22.76■■□□□ 1.23
COL16A1-215ENST00000488897 C5P01031 1676 aa22.76■■□□□ 1.23
COL16A1-215ENST00000488897 SNRPA1P09661 255 aaKnown RBP22.76■■□□□ 1.23
COL16A1-215ENST00000488897 CHPF2Q9P2E5 772 aa22.76■■□□□ 1.23
COL16A1-215ENST00000488897 PRKCSHP14314 528 aaPredicted RBP22.74■■□□□ 1.23
COL16A1-215ENST00000488897 SF3B2Q13435 895 aaKnown RBP22.74■■□□□ 1.23
COL16A1-215ENST00000488897 HDGFL1Q5TGJ6 251 aa22.74■■□□□ 1.23
COL16A1-215ENST00000488897 G2E3Q7L622 706 aa22.74■■□□□ 1.23
COL16A1-215ENST00000488897 PHAXQ9H814 394 aaKnown RBP22.74■■□□□ 1.23
COL16A1-215ENST00000488897 PAPPAQ13219 1627 aa22.73■■□□□ 1.23
COL16A1-215ENST00000488897 ARHGAP45Q92619 1136 aa22.73■■□□□ 1.23
COL16A1-215ENST00000488897 TNS1Q9HBL0 1735 aaKnown RBP22.73■■□□□ 1.23
COL16A1-215ENST00000488897 NBPF26B4DH59 902 aa22.73■■□□□ 1.23
COL16A1-215ENST00000488897 NBPF14Q5TI25 921 aa22.73■■□□□ 1.23
COL16A1-215ENST00000488897 NBPF10Q6P3W6 841 aaKnown RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms