RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 CEP135Q66GS9 1140 aa5.05□□□□□ -1.6
VPS50-210ENST00000471188 ATF7IPQ6VMQ6 1270 aa5.05□□□□□ -1.6
VPS50-210ENST00000471188 USP48Q86UV5 1035 aa5.05□□□□□ -1.6
VPS50-210ENST00000471188 ZNF622Q969S3 477 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS50-210ENST00000471188 NOB1Q9ULX3 412 aaKnown RBP5.05□□□□□ -1.6
VPS50-210ENST00000471188 CHMP3Q9Y3E7 222 aa5.05□□□□□ -1.6
VPS50-210ENST00000471188 LRRFIP2Q9Y608 721 aaKnown RBP5.05□□□□□ -1.6
VPS50-210ENST00000471188 ARHGEF40Q8TER5 1519 aa5.05□□□□□ -1.6
VPS50-210ENST00000471188 FAM135AQ9P2D6 1515 aa5.05□□□□□ -1.6
VPS50-210ENST00000471188 ABCC5O15440 1437 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 NPC1L1Q9UHC9 1359 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 CASQ1P31415 396 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 MMP14P50281 582 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 SYCP1Q15431 976 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 CTR9Q6PD62 1173 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 POTEEQ6S8J3 1075 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 CASC1Q6TDU7 716 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 DEF6Q9H4E7 631 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 CWC15Q9P013 229 aaKnown RBP5.04□□□□□ -1.6
VPS50-210ENST00000471188 BCCIPQ9P287 314 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS50-210ENST00000471188 CFDP1Q9UEE9 299 aaPredicted RBP5.04□□□□□ -1.6
VPS50-210ENST00000471188 MROH2AA6NES4 1674 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 FIBPO43427 364 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 RBM6P78332 1123 aaKnown RBP5.04□□□□□ -1.6
VPS50-210ENST00000471188 EXOSC9Q06265 439 aaKnown RBP5.04□□□□□ -1.6
VPS50-210ENST00000471188 SART3Q15020 963 aaKnown RBP5.04□□□□□ -1.6
VPS50-210ENST00000471188 TXLNBQ8N3L3 684 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 RBM33Q96EV2 1170 aaKnown RBP5.04□□□□□ -1.6
VPS50-210ENST00000471188 SLC26A8Q96RN1 970 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 NCAPGQ9BPX3 1015 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 TRIM5Q9C035 493 aa5.04□□□□□ -1.6
VPS50-210ENST00000471188 COL17A1Q9UMD9 1497 aaPredicted RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 NOP2P46087 812 aaKnown RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 LSM11P83369 360 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS50-210ENST00000471188 E2F4Q16254 413 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 ZSCAN26Q16670 478 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 CREBRFQ8IUR6 639 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 SSH1Q8WYL5 1049 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 RUNDC1Q96C34 613 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 HECW2Q9P2P5 1572 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 ZNF142P52746 1687 aaPredicted RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 TPM4P67936 248 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 NOM1Q5C9Z4 860 aaKnown RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 SIRT1Q96EB6 747 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 TRMT1Q9NXH9 659 aaKnown RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 ANKRD36BQ8N2N9 1353 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 PLB1Q6P1J6 1458 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 REC8O95072 547 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 MX1P20591 662 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 PTPN14Q15678 1187 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 CCDC27Q2M243 656 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 INTS3Q68E01 1043 aaKnown RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 TMX3Q96JJ7 454 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 NRBP1Q9UHY1 535 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 LCMT1Q9UIC8 334 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 JRKLQ9Y4A0 524 aa5.03□□□□□ -1.6
VPS50-210ENST00000471188 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.03□□□□□ -1.6
VPS50-210ENST00000471188 IPO8O15397 1037 aaKnown RBP5.02□□□□□ -1.61
VPS50-210ENST00000471188 AP5Z1O43299 807 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 TTC31Q49AM3 519 aaPredicted RBP5.02□□□□□ -1.61
VPS50-210ENST00000471188 CT47A1Q5JQC4 288 aaPredicted RBP5.02□□□□□ -1.61
VPS50-210ENST00000471188 GORABQ5T7V8 394 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 USP26Q9BXU7 913 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 ZBTB40Q9NUA8 1239 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 POLKQ9UBT6 870 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 GPRASP1Q5JY77 1395 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 BRD1O95696 1058 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 U2AF1L5P0DN76 240 aaPredicted RBP5.02□□□□□ -1.61
VPS50-210ENST00000471188 PBX2P40425 430 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 LMAN1P49257 510 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 U2AF1Q01081 240 aaKnown RBP eCLIP5.02□□□□□ -1.61
VPS50-210ENST00000471188 ERCC6LQ2NKX8 1250 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 WDR63Q8IWG1 891 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 CNPY2Q9Y2B0 182 aa5.02□□□□□ -1.61
VPS50-210ENST00000471188 PRG4Q92954 1404 aaPredicted RBP5.02□□□□□ -1.61
VPS50-210ENST00000471188 A0A1B0GUL7 405 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 GRXCR2A6NFK2 248 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 SLU7O95391 586 aaKnown RBP5.01□□□□□ -1.61
VPS50-210ENST00000471188 CCDC192P0DO97 292 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 GUCY2CP25092 1073 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 ST5P78524 1137 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 DMRTA1Q5VZB9 504 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 TMCO3Q6UWJ1 677 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 GCC1Q96CN9 775 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 ERO1AQ96HE7 468 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 ZNF446Q9NWS9 450 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 CEP83Q9Y592 693 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 MAGI2Q86UL8 1455 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 PIK3C2GO75747 1445 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 ARHGAP31Q2M1Z3 1444 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 CCDC172P0C7W6 258 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 BRPF1P55201 1214 aaPredicted RBP5.01□□□□□ -1.61
VPS50-210ENST00000471188 LUZP1Q86V48 1076 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 MORC1Q86VD1 984 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 SMARCE1Q969G3 411 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 KIF1BPQ96EK5 621 aa5.01□□□□□ -1.61
VPS50-210ENST00000471188 ZCCHC17Q9NP64 241 aaKnown RBP5.01□□□□□ -1.61
VPS50-210ENST00000471188 ARGLU1Q9NWB6 273 aaPredicted RBP5.01□□□□□ -1.61
VPS50-210ENST00000471188 RRP15Q9Y3B9 282 aaKnown RBP5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms