RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 EIF4A1P60842 406 aaKnown RBP8.25□□□□□ -1.09
SF3B1-206ENST00000462613 ITPK1Q13572 414 aa8.25□□□□□ -1.09
SF3B1-206ENST00000462613 R3HDM1Q15032 1099 aaKnown RBP8.25□□□□□ -1.09
SF3B1-206ENST00000462613 LINC00116Q8NCU8 138 aa8.25□□□□□ -1.09
SF3B1-206ENST00000462613 MBIPQ9NS73 344 aa8.25□□□□□ -1.09
SF3B1-206ENST00000462613 A0A087WZG4 1122 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 PSDA5PKW4 1024 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-206ENST00000462613 KCNQ3O43525 872 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 GIGYF1O75420 1035 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-206ENST00000462613 RPS6KA4O75676 772 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 RFC4P35249 363 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 TRAPPC3LQ5T215 181 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 SLC16A10Q8TF71 515 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 AKT1S1Q96B36 256 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 ZNF330Q9Y3S2 320 aaPredicted RBP8.24□□□□□ -1.09
SF3B1-206ENST00000462613 CASZ1Q86V15 1759 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 ERBB4Q15303 1308 aa8.24□□□□□ -1.09
SF3B1-206ENST00000462613 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.23□□□□□ -1.09
SF3B1-206ENST00000462613 E9PSI1 815 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 ZPR1O75312 459 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 PHF14O94880 888 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 ZNF853P0CG23 659 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 CYP19A1P11511 503 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-206ENST00000462613 EIF2S2P20042 333 aaKnown RBP8.23□□□□□ -1.09
SF3B1-206ENST00000462613 CANXP27824 592 aaKnown RBP8.23□□□□□ -1.09
SF3B1-206ENST00000462613 IL6STP40189 918 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-206ENST00000462613 ZNF827Q17R98 1081 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 HDGFL1Q5TGJ6 251 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 SLC4A9Q96Q91 983 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 ARXQ96QS3 562 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 STK31Q9BXU1 1019 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 ANO8Q9HCE9 1232 aaPredicted RBP8.23□□□□□ -1.09
SF3B1-206ENST00000462613 NUP98P52948 1817 aa8.23□□□□□ -1.09
SF3B1-206ENST00000462613 COL15A1P39059 1388 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 POLD1P28340 1107 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 DUSP27Q5VZP5 1158 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 TSR2Q969E8 191 aaKnown RBP8.22□□□□□ -1.09
SF3B1-206ENST00000462613 ZBTB1Q9Y2K1 713 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 USP16Q9Y5T5 823 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 FANCIQ9NVI1 1328 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 BCORQ6W2J9 1755 aa8.22□□□□□ -1.09
SF3B1-206ENST00000462613 SCN7AQ01118 1682 aa8.21□□□□□ -1.09
SF3B1-206ENST00000462613 TWISTNBQ3B726 338 aaPredicted RBP8.21□□□□□ -1.1
SF3B1-206ENST00000462613 CCDC30Q5VVM6 783 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 KIF6Q6ZMV9 814 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 MTFR1LQ9H019 292 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 SPON1Q9HCB6 807 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 DBF4Q9UBU7 674 aaPredicted RBP8.21□□□□□ -1.1
SF3B1-206ENST00000462613 ZNF652Q9Y2D9 606 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 ZBED9Q6R2W3 1325 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 PNPLA7Q6ZV29 1317 aa8.21□□□□□ -1.1
SF3B1-206ENST00000462613 ANKRD36CQ5JPF3 1778 aa8.2□□□□□ -1.1
SF3B1-206ENST00000462613 ELL2O00472 640 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-206ENST00000462613 A1BGP04217 495 aa8.2□□□□□ -1.1
SF3B1-206ENST00000462613 INTS5Q6P9B9 1019 aaKnown RBP8.2□□□□□ -1.1
SF3B1-206ENST00000462613 COL23A1Q86Y22 540 aaPredicted RBP8.2□□□□□ -1.1
SF3B1-206ENST00000462613 NLGN1Q8N2Q7 840 aa8.2□□□□□ -1.1
SF3B1-206ENST00000462613 ZNF521Q96K83 1311 aa8.2□□□□□ -1.1
SF3B1-206ENST00000462613 COL24A1Q17RW2 1714 aa8.2□□□□□ -1.1
SF3B1-206ENST00000462613 LRP5O75197 1615 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 PRAMEF22A3QJZ6 481 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 NPHP1O15259 732 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 DDX58O95786 925 aaKnown RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 CT47B1P0C2W7 299 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 MYL6BP14649 208 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 EIF5P55010 431 aaKnown RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 EXOSC9Q06265 439 aaKnown RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 DZIP3Q86Y13 1208 aaKnown RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 NECTIN2Q92692 538 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 ARHGEF1Q92888 912 aaKnown RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 ZNF428Q96B54 188 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 DDX21Q9NR30 783 aaKnown RBP eCLIP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 HYPKQ9NX55 129 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 PPP1R1BQ9UD71 204 aaPredicted RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 NARFQ9UHQ1 456 aa8.19□□□□□ -1.1
SF3B1-206ENST00000462613 AFDNP55196 1824 aaKnown RBP8.19□□□□□ -1.1
SF3B1-206ENST00000462613 ARFGEF2Q9Y6D5 1785 aa8.18□□□□□ -1.1
SF3B1-206ENST00000462613 ZBTB7AO95365 584 aa8.18□□□□□ -1.1
SF3B1-206ENST00000462613 SLFN5Q08AF3 891 aa8.18□□□□□ -1.1
SF3B1-206ENST00000462613 KRT24Q2M2I5 525 aa8.18□□□□□ -1.1
SF3B1-206ENST00000462613 C8orf58Q8NAV2 365 aa8.18□□□□□ -1.1
SF3B1-206ENST00000462613 CHPF2Q9P2E5 772 aa8.18□□□□□ -1.1
SF3B1-206ENST00000462613 USP42Q9H9J4 1324 aaKnown RBP8.18□□□□□ -1.1
SF3B1-206ENST00000462613 RGL2O15211 777 aa8.17□□□□□ -1.1
SF3B1-206ENST00000462613 HSP90AB3PQ58FF7 597 aa8.17□□□□□ -1.1
SF3B1-206ENST00000462613 TBC1D2BQ9UPU7 963 aa8.17□□□□□ -1.1
SF3B1-206ENST00000462613 ATF5Q9Y2D1 282 aaPredicted RBP8.17□□□□□ -1.1
SF3B1-206ENST00000462613 PARP3Q9Y6F1 533 aa8.17□□□□□ -1.1
SF3B1-206ENST00000462613 ERVV-1B6SEH8 477 aa8.16□□□□□ -1.1
SF3B1-206ENST00000462613 PIP4K2AP48426 406 aaPredicted RBP8.16□□□□□ -1.1
SF3B1-206ENST00000462613 AIMP1Q12904 312 aaKnown RBP8.16□□□□□ -1.1
SF3B1-206ENST00000462613 USPL1Q5W0Q7 1092 aa8.16□□□□□ -1.1
SF3B1-206ENST00000462613 CLEC4GQ6UXB4 293 aa8.16□□□□□ -1.1
SF3B1-206ENST00000462613 MAP3K15Q6ZN16 1313 aa8.16□□□□□ -1.1
SF3B1-206ENST00000462613 TSPYL6Q8N831 410 aa8.16□□□□□ -1.1
SF3B1-206ENST00000462613 CDCA7LQ96GN5 454 aa8.16□□□□□ -1.1
SF3B1-206ENST00000462613 YTHDC1Q96MU7 727 aaKnown RBP8.16□□□□□ -1.1
SF3B1-206ENST00000462613 NBPF26B4DH59 902 aa8.15□□□□□ -1.1
SF3B1-206ENST00000462613 VAMP4O75379 141 aa8.15□□□□□ -1.1
SF3B1-206ENST00000462613 SLC4A2P04920 1241 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms