RNA–Protein interactions for RNA: ENST00000459788.1

HDLBP-228, Transcript of high density lipoprotein binding protein, humanhuman

TSL 2

Gene HDLBP, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-228ENST00000459788 YBX3P16989 372 aaKnown RBP eCLIP13.33□□□□□ -0.282e-8■■□□□ 14.4
HDLBP-228ENST00000459788 SLC39A6Q13433 755 aa13.33□□□□□ -0.28
HDLBP-228ENST00000459788 ZNF784Q8NCA9 323 aaPredicted RBP13.33□□□□□ -0.28
HDLBP-228ENST00000459788 RTF1Q92541 710 aaKnown RBP13.33□□□□□ -0.28
HDLBP-228ENST00000459788 FMNL2Q96PY5 1086 aa13.33□□□□□ -0.28
HDLBP-228ENST00000459788 NARFQ9UHQ1 456 aa13.33□□□□□ -0.28
HDLBP-228ENST00000459788 COL15A1P39059 1388 aa13.32□□□□□ -0.28
HDLBP-228ENST00000459788 CNGB1Q14028 1251 aaPredicted RBP13.32□□□□□ -0.28
HDLBP-228ENST00000459788 SMIM5Q71RC9 77 aa13.32□□□□□ -0.28
HDLBP-228ENST00000459788 PXDNLA1KZ92 1463 aa13.31□□□□□ -0.28
HDLBP-228ENST00000459788 DLEC1Q9Y238 1755 aa13.31□□□□□ -0.28
HDLBP-228ENST00000459788 TM4SF1P30408 202 aa13.31□□□□□ -0.28
HDLBP-228ENST00000459788 PELP1Q8IZL8 1130 aaKnown RBP13.31□□□□□ -0.28
HDLBP-228ENST00000459788 SCN7AQ01118 1682 aa13.31□□□□□ -0.28
HDLBP-228ENST00000459788 BTBD11A6QL63 1104 aa13.3□□□□□ -0.28
HDLBP-228ENST00000459788 RGL2O15211 777 aa13.3□□□□□ -0.28
HDLBP-228ENST00000459788 IL6STP40189 918 aaPredicted RBP13.3□□□□□ -0.28
HDLBP-228ENST00000459788 EIF5P55010 431 aaKnown RBP13.3□□□□□ -0.28
HDLBP-228ENST00000459788 ZNF496Q96IT1 587 aaPredicted RBP13.3□□□□□ -0.28
HDLBP-228ENST00000459788 LAMB4A4D0S4 1761 aa13.3□□□□□ -0.28
HDLBP-228ENST00000459788 KDM3BQ7LBC6 1761 aa13.3□□□□□ -0.28
HDLBP-228ENST00000459788 FKBP8Q14318 412 aa13.29□□□□□ -0.28
HDLBP-228ENST00000459788 ZBTB1Q9Y2K1 713 aa13.29□□□□□ -0.28
HDLBP-228ENST00000459788 BCORQ6W2J9 1755 aa13.29□□□□□ -0.28
HDLBP-228ENST00000459788 PNISRQ8TF01 805 aaKnown RBP13.28□□□□□ -0.28
HDLBP-228ENST00000459788 POLRMTO00411 1230 aaKnown RBP13.27□□□□□ -0.29
HDLBP-228ENST00000459788 SNRPA1P09661 255 aaKnown RBP13.27□□□□□ -0.29
HDLBP-228ENST00000459788 TAF7Q15545 349 aaPredicted RBP13.27□□□□□ -0.29
HDLBP-228ENST00000459788 USPL1Q5W0Q7 1092 aa13.27□□□□□ -0.29
HDLBP-228ENST00000459788 PLEKHF1Q96S99 279 aa13.27□□□□□ -0.29
HDLBP-228ENST00000459788 SRP68Q9UHB9 627 aaKnown RBP13.27□□□□□ -0.29
HDLBP-228ENST00000459788 PDZRN3Q9UPQ7 1066 aa13.27□□□□□ -0.29
HDLBP-228ENST00000459788 ADCY9O60503 1353 aa13.27□□□□□ -0.29
HDLBP-228ENST00000459788 DDR1Q08345 913 aa13.26□□□□□ -0.29
HDLBP-228ENST00000459788 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
HDLBP-228ENST00000459788 MYBBP1AQ9BQG0 1328 aaKnown RBP13.26□□□□□ -0.29
HDLBP-228ENST00000459788 SBF1O95248 1867 aa13.25□□□□□ -0.29
HDLBP-228ENST00000459788 CANXP27824 592 aaKnown RBP13.25□□□□□ -0.29
HDLBP-228ENST00000459788 NFE2L2Q16236 605 aa13.25□□□□□ -0.29
HDLBP-228ENST00000459788 PIM2Q9P1W9 311 aa13.25□□□□□ -0.29
HDLBP-228ENST00000459788 MAPK8IP3Q9UPT6 1336 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 DPEP1P16444 411 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 NFIXQ14938 502 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 CLEC4GQ6UXB4 293 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 MCM10Q7L590 875 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 BCL2L12Q9HB09 334 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 BABAM1Q9NWV8 329 aa13.24□□□□□ -0.29
HDLBP-228ENST00000459788 ANKRD31Q8N7Z5 1873 aa13.23□□□□□ -0.29
HDLBP-228ENST00000459788 A0A0G2JLW4 131 aa13.23□□□□□ -0.29
HDLBP-228ENST00000459788 KCNA3P22001 575 aa13.23□□□□□ -0.29
HDLBP-228ENST00000459788 ZEB1P37275 1124 aaPredicted RBP13.23□□□□□ -0.29
HDLBP-228ENST00000459788 CARMIL3Q8ND23 1372 aa13.22□□□□□ -0.29
HDLBP-228ENST00000459788 SERPINB2P05120 415 aa13.22□□□□□ -0.29
HDLBP-228ENST00000459788 LMOD3Q0VAK6 560 aa13.22□□□□□ -0.29
HDLBP-228ENST00000459788 DDX10Q13206 875 aaKnown RBP13.22□□□□□ -0.29
HDLBP-228ENST00000459788 DALRD3Q5D0E6 543 aaKnown RBP13.22□□□□□ -0.29
HDLBP-228ENST00000459788 ARFGEF2Q9Y6D5 1785 aa13.22□□□□□ -0.29
HDLBP-228ENST00000459788 ATP10DQ9P241 1426 aa13.22□□□□□ -0.29
HDLBP-228ENST00000459788 NUP98P52948 1817 aa13.21□□□□□ -0.29
HDLBP-228ENST00000459788 KCNQ3O43525 872 aa13.21□□□□□ -0.29
HDLBP-228ENST00000459788 BCS1LQ9Y276 419 aa13.21□□□□□ -0.29
HDLBP-228ENST00000459788 ZNF652Q9Y2D9 606 aa13.21□□□□□ -0.29
HDLBP-228ENST00000459788 USP16Q9Y5T5 823 aa13.21□□□□□ -0.29
HDLBP-228ENST00000459788 GIGYF1O75420 1035 aaPredicted RBP13.2□□□□□ -0.3
HDLBP-228ENST00000459788 A1BGP04217 495 aa13.2□□□□□ -0.3
HDLBP-228ENST00000459788 DICER1Q9UPY3 1922 aaKnown RBP13.19□□□□□ -0.3
HDLBP-228ENST00000459788 ERBB4Q15303 1308 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 CCDC88AQ3V6T2 1871 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 CAMTA2O94983 1202 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 C1QTNF8P60827 252 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 DCTN1Q14203 1278 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 DZIP3Q86Y13 1208 aaKnown RBP13.19□□□□□ -0.3
HDLBP-228ENST00000459788 SETDB2Q96T68 719 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 BRIP1Q9BX63 1249 aa13.19□□□□□ -0.3
HDLBP-228ENST00000459788 ZC3H4Q9UPT8 1303 aaKnown RBP13.18□□□□□ -0.3
HDLBP-228ENST00000459788 H0YIN7 160 aa13.18□□□□□ -0.3
HDLBP-228ENST00000459788 PDE6BP35913 854 aa13.18□□□□□ -0.3
HDLBP-228ENST00000459788 GPBP1L1Q9HC44 474 aaPredicted RBP13.18□□□□□ -0.3
HDLBP-228ENST00000459788 TBC1D2BQ9UPU7 963 aa13.18□□□□□ -0.3
HDLBP-228ENST00000459788 FER1L6Q2WGJ9 1857 aa13.17□□□□□ -0.3
HDLBP-228ENST00000459788 EIF4A1P60842 406 aaKnown RBP13.17□□□□□ -0.3
HDLBP-228ENST00000459788 TBC1D9BQ66K14 1250 aa13.17□□□□□ -0.3
HDLBP-228ENST00000459788 ARHGAP27Q6ZUM4 889 aa13.17□□□□□ -0.3
HDLBP-228ENST00000459788 PRKRIP1Q9H875 184 aaPredicted RBP13.17□□□□□ -0.3
HDLBP-228ENST00000459788 COL11A2P13942 1736 aaPredicted RBP13.16□□□□□ -0.3
HDLBP-228ENST00000459788 ERVV-1B6SEH8 477 aa13.16□□□□□ -0.3
HDLBP-228ENST00000459788 TMPOP42166 694 aaKnown RBP13.16□□□□□ -0.3
HDLBP-228ENST00000459788 RIPK4P57078 832 aa13.16□□□□□ -0.3
HDLBP-228ENST00000459788 TTLL6Q8N841 843 aa13.16□□□□□ -0.3
HDLBP-228ENST00000459788 RUNDC1Q96C34 613 aa13.16□□□□□ -0.3
HDLBP-228ENST00000459788 NBPF26B4DH59 902 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 CHRNA5P30532 468 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 ST5P78524 1137 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 WDR43Q15061 677 aaKnown RBP eCLIP13.15□□□□□ -0.3
HDLBP-228ENST00000459788 PRR5LQ6MZQ0 368 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 NBPF10Q6P3W6 841 aaKnown RBP13.15□□□□□ -0.3
HDLBP-228ENST00000459788 C2CD5Q86YS7 1000 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 NBPF15Q8N660 670 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 CNBD1Q8NA66 436 aa13.15□□□□□ -0.3
HDLBP-228ENST00000459788 ZNF330Q9Y3S2 320 aaPredicted RBP13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms