RNA–Protein interactions for RNA: ENST00000444533.5

SSBP3-208, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-208ENST00000444533 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.27■□□□□ 0.52
SSBP3-208ENST00000444533 GIGYF1O75420 1035 aaPredicted RBP18.27■□□□□ 0.52
SSBP3-208ENST00000444533 RFC4P35249 363 aa18.27■□□□□ 0.52
SSBP3-208ENST00000444533 MBIPQ9NS73 344 aa18.27■□□□□ 0.52
SSBP3-208ENST00000444533 KDM3BQ7LBC6 1761 aa18.27■□□□□ 0.51
SSBP3-208ENST00000444533 CICQ96RK0 1608 aaPredicted RBP18.27■□□□□ 0.51
SSBP3-208ENST00000444533 CANXP27824 592 aaKnown RBP18.26■□□□□ 0.51
SSBP3-208ENST00000444533 ZNF330Q9Y3S2 320 aaPredicted RBP18.26■□□□□ 0.51
SSBP3-208ENST00000444533 TJP1Q07157 1748 aa18.26■□□□□ 0.51
SSBP3-208ENST00000444533 PNPLA7Q6ZV29 1317 aa18.25■□□□□ 0.51
SSBP3-208ENST00000444533 A0A087WZG4 1122 aa18.25■□□□□ 0.51
SSBP3-208ENST00000444533 ZNF853P0CG23 659 aa18.25■□□□□ 0.51
SSBP3-208ENST00000444533 GOLGA2Q08379 1002 aa18.25■□□□□ 0.51
SSBP3-208ENST00000444533 USP16Q9Y5T5 823 aa18.25■□□□□ 0.51
SSBP3-208ENST00000444533 COL5A3P25940 1745 aaPredicted RBP18.25■□□□□ 0.51
SSBP3-208ENST00000444533 ZPR1O75312 459 aa18.24■□□□□ 0.51
SSBP3-208ENST00000444533 HOXB7P09629 217 aa18.24■□□□□ 0.51
SSBP3-208ENST00000444533 INTS5Q6P9B9 1019 aaKnown RBP18.24■□□□□ 0.51
SSBP3-208ENST00000444533 ARXQ96QS3 562 aa18.24■□□□□ 0.51
SSBP3-208ENST00000444533 MTFR1LQ9H019 292 aa18.24■□□□□ 0.51
SSBP3-208ENST00000444533 SPON1Q9HCB6 807 aa18.24■□□□□ 0.51
SSBP3-208ENST00000444533 EIF2S2P20042 333 aaKnown RBP18.23■□□□□ 0.51
SSBP3-208ENST00000444533 HNRNPUQ00839 825 aaKnown RBP eCLIP18.23■□□□□ 0.51
SSBP3-208ENST00000444533 COL23A1Q86Y22 540 aaPredicted RBP18.23■□□□□ 0.51
SSBP3-208ENST00000444533 ZBTB1Q9Y2K1 713 aa18.23■□□□□ 0.51
SSBP3-208ENST00000444533 QSER1Q2KHR3 1735 aa18.23■□□□□ 0.51
SSBP3-208ENST00000444533 SOS1Q07889 1333 aaPredicted RBP18.23■□□□□ 0.51
SSBP3-208ENST00000444533 ZBTB7AO95365 584 aa18.22■□□□□ 0.51
SSBP3-208ENST00000444533 A1BGP04217 495 aa18.22■□□□□ 0.51
SSBP3-208ENST00000444533 POLD1P28340 1107 aa18.22■□□□□ 0.51
SSBP3-208ENST00000444533 IL6STP40189 918 aaPredicted RBP18.22■□□□□ 0.51
SSBP3-208ENST00000444533 ERBB4Q15303 1308 aa18.22■□□□□ 0.51
SSBP3-208ENST00000444533 PRAMEF22A3QJZ6 481 aa18.21■□□□□ 0.51
SSBP3-208ENST00000444533 E9PSI1 815 aa18.21■□□□□ 0.51
SSBP3-208ENST00000444533 DUSP27Q5VZP5 1158 aa18.21■□□□□ 0.51
SSBP3-208ENST00000444533 ARHGEF1Q92888 912 aaKnown RBP18.21■□□□□ 0.51
SSBP3-208ENST00000444533 TSR2Q969E8 191 aaKnown RBP18.21■□□□□ 0.51
SSBP3-208ENST00000444533 COL15A1P39059 1388 aa18.2■□□□□ 0.5
SSBP3-208ENST00000444533 HDGFL1Q5TGJ6 251 aa18.2■□□□□ 0.5
SSBP3-208ENST00000444533 UBR3Q6ZT12 1888 aa18.2■□□□□ 0.5
SSBP3-208ENST00000444533 PPP1R1BQ9UD71 204 aaPredicted RBP18.19■□□□□ 0.5
SSBP3-208ENST00000444533 ATF5Q9Y2D1 282 aaPredicted RBP18.19■□□□□ 0.5
SSBP3-208ENST00000444533 FANCIQ9NVI1 1328 aa18.19■□□□□ 0.5
SSBP3-208ENST00000444533 LAMB4A4D0S4 1761 aa18.18■□□□□ 0.5
SSBP3-208ENST00000444533 ELL2O00472 640 aaPredicted RBP18.18■□□□□ 0.5
SSBP3-208ENST00000444533 EIF5P55010 431 aaKnown RBP18.18■□□□□ 0.5
SSBP3-208ENST00000444533 NLGN1Q8N2Q7 840 aa18.18■□□□□ 0.5
SSBP3-208ENST00000444533 PDGFDQ9GZP0 370 aaPredicted RBP18.18■□□□□ 0.5
SSBP3-208ENST00000444533 TUBGCP6Q96RT7 1819 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 MYL6BP14649 208 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 KRT24Q2M2I5 525 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 CCDC30Q5VVM6 783 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 KIF6Q6ZMV9 814 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 SMIM5Q71RC9 77 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 NECTIN2Q92692 538 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 ZNF521Q96K83 1311 aa18.17■□□□□ 0.5
SSBP3-208ENST00000444533 MYH14Q7Z406 1995 aaKnown RBP18.17■□□□□ 0.5
SSBP3-208ENST00000444533 TWISTNBQ3B726 338 aaPredicted RBP18.16■□□□□ 0.5
SSBP3-208ENST00000444533 AMIGO3Q86WK7 504 aa18.16■□□□□ 0.5
SSBP3-208ENST00000444533 DZIP3Q86Y13 1208 aaKnown RBP18.16■□□□□ 0.5
SSBP3-208ENST00000444533 STK31Q9BXU1 1019 aa18.16■□□□□ 0.5
SSBP3-208ENST00000444533 DBF4Q9UBU7 674 aaPredicted RBP18.16■□□□□ 0.5
SSBP3-208ENST00000444533 NARFQ9UHQ1 456 aa18.16■□□□□ 0.5
SSBP3-208ENST00000444533 ZNF652Q9Y2D9 606 aa18.16■□□□□ 0.5
SSBP3-208ENST00000444533 CASZ1Q86V15 1759 aa18.16■□□□□ 0.5
SSBP3-208ENST00000444533 PIP4K2AP48426 406 aaPredicted RBP18.15■□□□□ 0.5
SSBP3-208ENST00000444533 MSL1Q68DK7 614 aa18.15■□□□□ 0.5
SSBP3-208ENST00000444533 C8orf58Q8NAV2 365 aa18.15■□□□□ 0.5
SSBP3-208ENST00000444533 USP42Q9H9J4 1324 aaKnown RBP18.15■□□□□ 0.5
SSBP3-208ENST00000444533 DDX21Q9NR30 783 aaKnown RBP eCLIP18.14■□□□□ 0.49
SSBP3-208ENST00000444533 HYPKQ9NX55 129 aa18.14■□□□□ 0.49
SSBP3-208ENST00000444533 TBC1D2BQ9UPU7 963 aa18.14■□□□□ 0.49
SSBP3-208ENST00000444533 EXOSC9Q06265 439 aaKnown RBP18.13■□□□□ 0.49
SSBP3-208ENST00000444533 USPL1Q5W0Q7 1092 aa18.13■□□□□ 0.49
SSBP3-208ENST00000444533 NBPF26B4DH59 902 aa18.12■□□□□ 0.49
SSBP3-208ENST00000444533 GYS1P13807 737 aa18.12■□□□□ 0.49
SSBP3-208ENST00000444533 SLFN5Q08AF3 891 aa18.12■□□□□ 0.49
SSBP3-208ENST00000444533 NBPF10Q6P3W6 841 aaKnown RBP18.12■□□□□ 0.49
SSBP3-208ENST00000444533 NBPF15Q8N660 670 aa18.12■□□□□ 0.49
SSBP3-208ENST00000444533 CHPF2Q9P2E5 772 aa18.12■□□□□ 0.49
SSBP3-208ENST00000444533 SRP68Q9UHB9 627 aaKnown RBP18.12■□□□□ 0.49
SSBP3-208ENST00000444533 PARP3Q9Y6F1 533 aa18.12■□□□□ 0.49
SSBP3-208ENST00000444533 TSPYL6Q8N831 410 aa18.11■□□□□ 0.49
SSBP3-208ENST00000444533 SPINK5Q9NQ38 1064 aaPredicted RBP18.11■□□□□ 0.49
SSBP3-208ENST00000444533 ZBED9Q6R2W3 1325 aa18.1■□□□□ 0.49
SSBP3-208ENST00000444533 RGL2O15211 777 aa18.1■□□□□ 0.49
SSBP3-208ENST00000444533 NPHP1O15259 732 aa18.1■□□□□ 0.49
SSBP3-208ENST00000444533 AIMP1Q12904 312 aaKnown RBP18.1■□□□□ 0.49
SSBP3-208ENST00000444533 CLEC4GQ6UXB4 293 aa18.1■□□□□ 0.49
SSBP3-208ENST00000444533 ERVV-1B6SEH8 477 aa18.09■□□□□ 0.49
SSBP3-208ENST00000444533 DDX58O95786 925 aaKnown RBP18.09■□□□□ 0.49
SSBP3-208ENST00000444533 MMP10P09238 476 aa18.09■□□□□ 0.49
SSBP3-208ENST00000444533 C4AP0C0L4 1744 aa18.09■□□□□ 0.49
SSBP3-208ENST00000444533 MAP3K15Q6ZN16 1313 aa18.08■□□□□ 0.49
SSBP3-208ENST00000444533 FKBP8Q14318 412 aa18.08■□□□□ 0.48
SSBP3-208ENST00000444533 COPS6Q7L5N1 327 aa18.08■□□□□ 0.48
SSBP3-208ENST00000444533 CDCA7LQ96GN5 454 aa18.08■□□□□ 0.48
SSBP3-208ENST00000444533 SETDB2Q96T68 719 aa18.08■□□□□ 0.48
SSBP3-208ENST00000444533 CAMTA2O94983 1202 aa18.07■□□□□ 0.48
SSBP3-208ENST00000444533 ANXA1P04083 346 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 224.2 ms