RNA–Protein interactions for RNA: ENST00000444533.5

SSBP3-208, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 560 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-208ENST00000444533 NISCHQ9Y2I1 1504 aa33.53■■■□□ 2.96
SSBP3-208ENST00000444533 CCDC180Q9P1Z9 1646 aa29.73■■■□□ 2.35
SSBP3-208ENST00000444533 ABCC9O60706 1549 aa28.89■■■□□ 2.22
SSBP3-208ENST00000444533 DCAF8L2P0C7V8 631 aa28.1■■■□□ 2.09
SSBP3-208ENST00000444533 ZCCHC6Q5VYS8 1495 aaKnown RBP27.95■■■□□ 2.07
SSBP3-208ENST00000444533 NACADO15069 1562 aa27.94■■■□□ 2.06
SSBP3-208ENST00000444533 RB1CC1Q8TDY2 1594 aa27.94■■■□□ 2.06
SSBP3-208ENST00000444533 MYO15BQ96JP2 1530 aa27.81■■■□□ 2.04
SSBP3-208ENST00000444533 DCAF1Q9Y4B6 1507 aa27.76■■■□□ 2.03
SSBP3-208ENST00000444533 UNC13AQ9UPW8 1703 aa27.15■■□□□ 1.94
SSBP3-208ENST00000444533 SCRIBQ14160 1630 aa27.14■■□□□ 1.94
SSBP3-208ENST00000444533 PABPN1Q86U42 306 aaKnown RBP eCLIP27.05■■□□□ 1.92
SSBP3-208ENST00000444533 BICRAQ9NZM4 1560 aa26.92■■□□□ 1.9
SSBP3-208ENST00000444533 SHROOM4Q9ULL8 1493 aa26.82■■□□□ 1.88
SSBP3-208ENST00000444533 EIF4G1Q04637 1599 aaKnown RBP26.29■■□□□ 1.8
SSBP3-208ENST00000444533 DNAJC5BQ9UF47 199 aa26.21■■□□□ 1.79
SSBP3-208ENST00000444533 CC2D2AQ9P2K1 1620 aa26.12■■□□□ 1.77
SSBP3-208ENST00000444533 CECR2Q9BXF3 1484 aa26.04■■□□□ 1.76
SSBP3-208ENST00000444533 BAZ1AQ9NRL2 1556 aaPredicted RBP26.03■■□□□ 1.76
SSBP3-208ENST00000444533 SMARCA4P51532 1647 aa25.96■■□□□ 1.75
SSBP3-208ENST00000444533 SMARCA2P51531 1590 aa25.83■■□□□ 1.73
SSBP3-208ENST00000444533 MROH2BQ7Z745 1585 aa25.81■■□□□ 1.72
SSBP3-208ENST00000444533 ATAD2BQ9ULI0 1458 aa25.78■■□□□ 1.72
SSBP3-208ENST00000444533 NCAPD3P42695 1498 aa25.74■■□□□ 1.71
SSBP3-208ENST00000444533 PEG3Q9GZU2 1588 aa25.69■■□□□ 1.7
SSBP3-208ENST00000444533 BAZ1BQ9UIG0 1483 aaKnown RBP25.65■■□□□ 1.7
SSBP3-208ENST00000444533 HMGXB3Q12766 1538 aa25.64■■□□□ 1.7
SSBP3-208ENST00000444533 RSF1Q96T23 1441 aaPredicted RBP25.62■■□□□ 1.69
SSBP3-208ENST00000444533 WIZO95785 1651 aa25.55■■□□□ 1.68
SSBP3-208ENST00000444533 TOP2AP11388 1531 aaKnown RBP25.33■■□□□ 1.65
SSBP3-208ENST00000444533 SUPT5HO00267 1087 aaKnown RBP25.26■■□□□ 1.63
SSBP3-208ENST00000444533 LAMC3Q9Y6N6 1575 aa25.06■■□□□ 1.6
SSBP3-208ENST00000444533 CADPSQ9ULU8 1353 aa25.04■■□□□ 1.6
SSBP3-208ENST00000444533 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
SSBP3-208ENST00000444533 NESP48681 1621 aa25.01■■□□□ 1.59
SSBP3-208ENST00000444533 ERCC6Q03468 1493 aa25■■□□□ 1.59
SSBP3-208ENST00000444533 PDS5BQ9NTI5 1447 aa24.95■■□□□ 1.59
SSBP3-208ENST00000444533 CFTRP13569 1480 aa24.9■■□□□ 1.58
SSBP3-208ENST00000444533 FANCD2Q9BXW9 1451 aa24.76■■□□□ 1.55
SSBP3-208ENST00000444533 CEP164Q9UPV0 1460 aa24.73■■□□□ 1.55
SSBP3-208ENST00000444533 KIF21AQ7Z4S6 1674 aa24.72■■□□□ 1.55
SSBP3-208ENST00000444533 PRDM2Q13029 1718 aa24.72■■□□□ 1.55
SSBP3-208ENST00000444533 MRC2Q9UBG0 1479 aa24.63■■□□□ 1.53
SSBP3-208ENST00000444533 CUX2O14529 1486 aa24.6■■□□□ 1.53
SSBP3-208ENST00000444533 THOC2Q8NI27 1593 aaKnown RBP24.58■■□□□ 1.52
SSBP3-208ENST00000444533 WDR62O43379 1518 aa24.49■■□□□ 1.51
SSBP3-208ENST00000444533 ABCC8Q09428 1581 aa24.46■■□□□ 1.51
SSBP3-208ENST00000444533 URB2Q14146 1524 aaKnown RBP24.42■■□□□ 1.5
SSBP3-208ENST00000444533 TOPBP1Q92547 1522 aa24.35■■□□□ 1.49
SSBP3-208ENST00000444533 DNMBPQ6XZF7 1577 aa24.35■■□□□ 1.49
SSBP3-208ENST00000444533 WRNQ14191 1432 aaPredicted RBP eCLIP24.22■■□□□ 1.47
SSBP3-208ENST00000444533 CUX1P39880 1505 aa24.2■■□□□ 1.47
SSBP3-208ENST00000444533 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
SSBP3-208ENST00000444533 POLA1P09884 1462 aaPredicted RBP24.15■■□□□ 1.46
SSBP3-208ENST00000444533 FGD5Q6ZNL6 1462 aa24.13■■□□□ 1.45
SSBP3-208ENST00000444533 SOGA1O94964 1423 aa24.12■■□□□ 1.45
SSBP3-208ENST00000444533 TOP2BQ02880 1626 aa24.1■■□□□ 1.45
SSBP3-208ENST00000444533 BIVM-ERCC5R4GMW8 1640 aa24.06■■□□□ 1.44
SSBP3-208ENST00000444533 SYNJ1O43426 1573 aa24.05■■□□□ 1.44
SSBP3-208ENST00000444533 RAD54L2Q9Y4B4 1467 aa24.03■■□□□ 1.44
SSBP3-208ENST00000444533 TARBP1Q13395 1621 aaKnown RBP24.02■■□□□ 1.44
SSBP3-208ENST00000444533 ZNF608Q9ULD9 1512 aaPredicted RBP23.98■■□□□ 1.43
SSBP3-208ENST00000444533 WDR97A6NE52 1622 aa23.94■■□□□ 1.42
SSBP3-208ENST00000444533 TDRD9Q8NDG6 1382 aaKnown RBP23.92■■□□□ 1.42
SSBP3-208ENST00000444533 EIF4G3O43432 1585 aaKnown RBP23.92■■□□□ 1.42
SSBP3-208ENST00000444533 ABCA10Q8WWZ4 1543 aa23.91■■□□□ 1.42
SSBP3-208ENST00000444533 AQRO60306 1485 aaKnown RBP eCLIP23.91■■□□□ 1.421e-7■■■■□ 23.2
SSBP3-208ENST00000444533 TRIM41Q8WV44 630 aa23.88■■□□□ 1.41
SSBP3-208ENST00000444533 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
SSBP3-208ENST00000444533 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
SSBP3-208ENST00000444533 ABCA5Q8WWZ7 1642 aa23.76■■□□□ 1.39
SSBP3-208ENST00000444533 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
SSBP3-208ENST00000444533 MAGI1Q96QZ7 1491 aaPredicted RBP23.73■■□□□ 1.39
SSBP3-208ENST00000444533 FBLN2P98095 1184 aa23.72■■□□□ 1.39
SSBP3-208ENST00000444533 PBRM1Q86U86 1689 aa23.72■■□□□ 1.39
SSBP3-208ENST00000444533 SNAPC4Q5SXM2 1469 aa23.71■■□□□ 1.39
SSBP3-208ENST00000444533 OSCARQ8IYS5 282 aa23.68■■□□□ 1.38
SSBP3-208ENST00000444533 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
SSBP3-208ENST00000444533 ERICH3Q5RHP9 1530 aa23.66■■□□□ 1.38
SSBP3-208ENST00000444533 SYNJ2O15056 1496 aa23.62■■□□□ 1.37
SSBP3-208ENST00000444533 CHIC1Q5VXU3 224 aa23.61■■□□□ 1.37
SSBP3-208ENST00000444533 FHAD1B1AJZ9 1412 aa23.58■■□□□ 1.36
SSBP3-208ENST00000444533 DNAJC5Q9H3Z4 198 aa23.57■■□□□ 1.36
SSBP3-208ENST00000444533 CHD1O14646 1710 aa23.56■■□□□ 1.36
SSBP3-208ENST00000444533 IGF1RP08069 1367 aa23.53■■□□□ 1.36
SSBP3-208ENST00000444533 ADAMTS12P58397 1594 aa23.53■■□□□ 1.36
SSBP3-208ENST00000444533 CUL7Q14999 1698 aa23.5■■□□□ 1.35
SSBP3-208ENST00000444533 GRIN2AQ12879 1464 aa23.48■■□□□ 1.35
SSBP3-208ENST00000444533 CARMIL1Q5VZK9 1371 aa23.45■■□□□ 1.34
SSBP3-208ENST00000444533 EEA1Q15075 1411 aa23.44■■□□□ 1.34
SSBP3-208ENST00000444533 RUSC2Q8N2Y8 1516 aa23.43■■□□□ 1.34
SSBP3-208ENST00000444533 CSRNP3Q8WYN3 585 aa23.36■■□□□ 1.33
SSBP3-208ENST00000444533 RAPGEF2Q9Y4G8 1499 aa23.34■■□□□ 1.33
SSBP3-208ENST00000444533 FAM9AQ8IZU1 332 aaPredicted RBP23.33■■□□□ 1.33
SSBP3-208ENST00000444533 NUP160Q12769 1436 aa23.33■■□□□ 1.32
SSBP3-208ENST00000444533 CLASP1Q7Z460 1538 aa23.3■■□□□ 1.32
SSBP3-208ENST00000444533 CEP170Q5SW79 1584 aa23.29■■□□□ 1.32
SSBP3-208ENST00000444533 PRXQ9BXM0 1461 aa23.24■■□□□ 1.31
SSBP3-208ENST00000444533 KIAA0586Q9BVV6 1533 aa23.21■■□□□ 1.31
SSBP3-208ENST00000444533 ARHGEF11O15085 1522 aa23.19■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms