RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 CCNL1Q9UK58 526 aaPredicted RBP16.26■□□□□ 0.19
SCLT1-202ENST00000439369 USP16Q9Y5T5 823 aa16.26■□□□□ 0.19
SCLT1-202ENST00000439369 RREB1Q92766 1687 aa16.26■□□□□ 0.19
SCLT1-202ENST00000439369 PRAMEF22A3QJZ6 481 aa16.25■□□□□ 0.19
SCLT1-202ENST00000439369 ITPK1Q13572 414 aa16.25■□□□□ 0.19
SCLT1-202ENST00000439369 RC3H1Q5TC82 1133 aaKnown RBP16.25■□□□□ 0.19
SCLT1-202ENST00000439369 SMC4Q9NTJ3 1288 aa16.25■□□□□ 0.19
SCLT1-202ENST00000439369 HYPKQ9NX55 129 aa16.25■□□□□ 0.19
SCLT1-202ENST00000439369 CACNA1FO60840 1977 aa16.25■□□□□ 0.19
SCLT1-202ENST00000439369 CNTNAP4Q9C0A0 1308 aa16.24■□□□□ 0.19
SCLT1-202ENST00000439369 EIF2S2P20042 333 aaKnown RBP16.24■□□□□ 0.19
SCLT1-202ENST00000439369 BAG6P46379 1132 aa16.24■□□□□ 0.19
SCLT1-202ENST00000439369 MRPL50Q8N5N7 158 aaKnown RBP16.24■□□□□ 0.19
SCLT1-202ENST00000439369 TXNRD1Q16881 649 aa16.23■□□□□ 0.19
SCLT1-202ENST00000439369 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.23■□□□□ 0.19
SCLT1-202ENST00000439369 CCDC87Q9NVE4 849 aa16.23■□□□□ 0.19
SCLT1-202ENST00000439369 CHPF2Q9P2E5 772 aa16.23■□□□□ 0.19
SCLT1-202ENST00000439369 RNF123Q5XPI4 1314 aa16.22■□□□□ 0.19
SCLT1-202ENST00000439369 IPO8O15397 1037 aaKnown RBP16.22■□□□□ 0.19
SCLT1-202ENST00000439369 SLC4A2P04920 1241 aa16.22■□□□□ 0.19
SCLT1-202ENST00000439369 PDIA6Q15084 440 aa16.22■□□□□ 0.19
SCLT1-202ENST00000439369 ARHGAP45Q92619 1136 aa16.22■□□□□ 0.19
SCLT1-202ENST00000439369 TAF1LQ8IZX4 1826 aa16.22■□□□□ 0.19
SCLT1-202ENST00000439369 PTPRCP08575 1304 aa16.21■□□□□ 0.19
SCLT1-202ENST00000439369 CRKLP46109 303 aaKnown RBP16.21■□□□□ 0.19
SCLT1-202ENST00000439369 BCAR3O75815 825 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 A1BGP04217 495 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 IL6STP40189 918 aaPredicted RBP16.2■□□□□ 0.18
SCLT1-202ENST00000439369 INTS5Q6P9B9 1019 aaKnown RBP16.2■□□□□ 0.18
SCLT1-202ENST00000439369 LRP10Q7Z4F1 713 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 PROM2Q8N271 834 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 LINC00116Q8NCU8 138 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 NECTIN2Q92692 538 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 CAMKK2Q96RR4 588 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 LRRC4BQ9NT99 713 aa16.2■□□□□ 0.18
SCLT1-202ENST00000439369 C4BP0C0L5 1744 aa16.19■□□□□ 0.18
SCLT1-202ENST00000439369 NBPF26B4DH59 902 aa16.19■□□□□ 0.18
SCLT1-202ENST00000439369 MS4A1P11836 297 aa16.19■□□□□ 0.18
SCLT1-202ENST00000439369 NBPF14Q5TI25 921 aa16.19■□□□□ 0.18
SCLT1-202ENST00000439369 NBPF10Q6P3W6 841 aaKnown RBP16.19■□□□□ 0.18
SCLT1-202ENST00000439369 NBPF15Q8N660 670 aa16.19■□□□□ 0.18
SCLT1-202ENST00000439369 BCL2L13Q9BXK5 485 aa16.19■□□□□ 0.18
SCLT1-202ENST00000439369 DDX58O95786 925 aaKnown RBP16.18■□□□□ 0.18
SCLT1-202ENST00000439369 FLIIQ13045 1269 aa16.18■□□□□ 0.18
SCLT1-202ENST00000439369 API5Q9BZZ5 524 aaKnown RBP16.18■□□□□ 0.18
SCLT1-202ENST00000439369 ZBTB1Q9Y2K1 713 aa16.18■□□□□ 0.18
SCLT1-202ENST00000439369 TCERG1O14776 1098 aaKnown RBP16.17■□□□□ 0.18
SCLT1-202ENST00000439369 RGL2O15211 777 aa16.17■□□□□ 0.18
SCLT1-202ENST00000439369 RPS6KA4O75676 772 aa16.17■□□□□ 0.18
SCLT1-202ENST00000439369 EIF5P55010 431 aaKnown RBP16.17■□□□□ 0.18
SCLT1-202ENST00000439369 RRP1P56182 461 aaKnown RBP16.17■□□□□ 0.18
SCLT1-202ENST00000439369 PROSER3Q2NL68 480 aa16.17■□□□□ 0.18
SCLT1-202ENST00000439369 ZKSCAN2Q63HK3 967 aa16.17■□□□□ 0.18
SCLT1-202ENST00000439369 NPM2Q86SE8 214 aaKnown RBP16.17■□□□□ 0.18
SCLT1-202ENST00000439369 A0A087WZG4 1122 aa16.16■□□□□ 0.18
SCLT1-202ENST00000439369 MYL6BP14649 208 aa16.16■□□□□ 0.18
SCLT1-202ENST00000439369 ADRA2BP18089 450 aa16.16■□□□□ 0.18
SCLT1-202ENST00000439369 EN1Q05925 392 aaPredicted RBP16.16■□□□□ 0.18
SCLT1-202ENST00000439369 ATF7IPQ6VMQ6 1270 aa16.16■□□□□ 0.18
SCLT1-202ENST00000439369 UPF1Q92900 1129 aaKnown RBP eCLIP16.16■□□□□ 0.18
SCLT1-202ENST00000439369 AK7Q96M32 723 aa16.16■□□□□ 0.18
SCLT1-202ENST00000439369 NOB1Q9ULX3 412 aaKnown RBP16.16■□□□□ 0.18
SCLT1-202ENST00000439369 EP400Q96L91 3159 aa16.15■□□□□ 0.18
SCLT1-202ENST00000439369 CANXP27824 592 aaKnown RBP16.15■□□□□ 0.18
SCLT1-202ENST00000439369 KCNQ4P56696 695 aa16.15■□□□□ 0.18
SCLT1-202ENST00000439369 PDE3AQ14432 1141 aa16.15■□□□□ 0.18
SCLT1-202ENST00000439369 G2E3Q7L622 706 aa16.15■□□□□ 0.18
SCLT1-202ENST00000439369 FRAT1Q92837 279 aaPredicted RBP16.15■□□□□ 0.18
SCLT1-202ENST00000439369 SUPT16HQ9Y5B9 1047 aaKnown RBP16.15■□□□□ 0.18
SCLT1-202ENST00000439369 MYH14Q7Z406 1995 aaKnown RBP16.15■□□□□ 0.18
SCLT1-202ENST00000439369 FKBP5Q13451 457 aaPredicted RBP16.14■□□□□ 0.17
SCLT1-202ENST00000439369 EZH2Q15910 746 aaKnown RBP16.14■□□□□ 0.17
SCLT1-202ENST00000439369 COPS6Q7L5N1 327 aa16.14■□□□□ 0.17
SCLT1-202ENST00000439369 XAGE3Q8WTP9 111 aa16.14■□□□□ 0.17
SCLT1-202ENST00000439369 PHAXQ9H814 394 aaKnown RBP16.14■□□□□ 0.17
SCLT1-202ENST00000439369 RTCBQ9Y3I0 505 aaKnown RBP16.14■□□□□ 0.17
SCLT1-202ENST00000439369 PXDNLA1KZ92 1463 aa16.14■□□□□ 0.17
SCLT1-202ENST00000439369 COL15A1P39059 1388 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 GNPATO15228 680 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 ANXA1P04083 346 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 TRIM27P14373 513 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 SSFA2P28290 1259 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 KSR2Q6VAB6 950 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 KIF6Q6ZMV9 814 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 FLAD1Q8NFF5 587 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 PLBD2Q8NHP8 589 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 AKT1S1Q96B36 256 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 NUP188Q5SRE5 1749 aa16.13■□□□□ 0.17
SCLT1-202ENST00000439369 IBTKQ9P2D0 1353 aaPredicted RBP16.13■□□□□ 0.17
SCLT1-202ENST00000439369 ERVV-1B6SEH8 477 aa16.12■□□□□ 0.17
SCLT1-202ENST00000439369 PIP4K2AP48426 406 aaPredicted RBP16.12■□□□□ 0.17
SCLT1-202ENST00000439369 ANKRD13DQ6ZTN6 518 aa16.12■□□□□ 0.17
SCLT1-202ENST00000439369 ABCC4O15439 1325 aa16.12■□□□□ 0.17
SCLT1-202ENST00000439369 ILDR2Q71H61 639 aa16.11■□□□□ 0.17
SCLT1-202ENST00000439369 DEFB132Q7Z7B7 95 aa16.11■□□□□ 0.17
SCLT1-202ENST00000439369 DZIP1LQ8IYY4 767 aaKnown RBP16.11■□□□□ 0.17
SCLT1-202ENST00000439369 UBR3Q6ZT12 1888 aa16.11■□□□□ 0.17
SCLT1-202ENST00000439369 MAP3K15Q6ZN16 1313 aa16.11■□□□□ 0.17
SCLT1-202ENST00000439369 ADCY9O60503 1353 aa16.11■□□□□ 0.17
SCLT1-202ENST00000439369 ATP10DQ9P241 1426 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms