RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 ALDH1B1P30837 517 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 PKN1Q16512 942 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 PTPROQ16827 1216 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 PBXIP1Q96AQ6 731 aa3.51□□□□□ -1.85
CCDC88A-205ENST00000426576 SPTBN1Q01082 2364 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 CCDC168Q8NDH2 2452 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 RPTORQ8N122 1335 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 MAP4K4O95819 1239 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 HSP90AB1P08238 724 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 TMEM132AQ24JP5 1023 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 COLEC12Q5KU26 742 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 LRSAM1Q6UWE0 723 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 PPM1NQ8N819 430 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 ZNF536O15090 1300 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 PPP1R37O75864 691 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 PLA2G5P39877 138 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 ATN1P54259 1190 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 VPS72Q15906 364 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 TAF12Q16514 161 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 ZNF605Q86T29 641 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 CNBD1Q8NA66 436 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 TIMELESSQ9UNS1 1208 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 ABCA12Q86UK0 2595 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 PTCD1O75127 700 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 ZMYND10O75800 440 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 FBXO31Q5XUX0 539 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 RGMBQ6NW40 437 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 TTC30AQ86WT1 665 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 NLRP3Q96P20 1036 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 NSD3Q9BZ95 1437 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 ANGEL1Q9UNK9 670 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 SNAPC4Q5SXM2 1469 aa3.5□□□□□ -1.85
CCDC88A-205ENST00000426576 LRRK2Q5S007 2527 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 VAMP4O75379 141 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CHAF1AQ13111 956 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 TNFAIP1Q13829 316 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 PRR23BQ6ZRT6 265 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 FLCNQ8NFG4 579 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 EXOC4Q96A65 974 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CHMP4AQ9BY43 222 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 RBM28Q9NW13 759 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 GVINP1Q7Z2Y8 2422 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 SFI1A8K8P3 1242 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 MFSD14CQ5VZR4 134 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 RTKN2Q8IZC4 609 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 KCNH5Q8NCM2 988 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 DDX1Q92499 740 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CABIN1Q9Y6J0 2220 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 FRMD3A2A2Y4 597 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 COL9A3Q14050 684 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 C6orf132Q5T0Z8 1188 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 MCTP2Q6DN12 878 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 SPIRE2Q8WWL2 714 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 RRP7BPQ9NSQ0 103 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 ZNF608Q9ULD9 1512 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 RIMBP3CA6NJZ7 1639 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 RIMBP3BA6NNM3 1639 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 RIMBP3Q9UFD9 1639 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CREB1P16220 341 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CANXP27824 592 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 FCGRTP55899 365 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CCNA1P78396 465 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 SP3Q02447 781 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 LRRC41Q15345 812 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 SLC27A3Q5K4L6 730 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 C1orf228Q6PIY5 440 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 TPTE2Q6XPS3 522 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CHST13Q8NET6 341 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 DDX17Q92841 729 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 GZF1Q9H116 711 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 PIDD1Q9HB75 910 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CTNNA3Q9UI47 895 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 ZMYM3Q14202 1370 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 URB1O60287 2271 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 CACNA1HO95180 2353 aa3.49□□□□□ -1.85
CCDC88A-205ENST00000426576 FASNP49327 2511 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 MUC6Q6W4X9 2439 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 FHOD3Q2V2M9 1422 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 PITPNM2Q9BZ72 1349 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 GLTPD2A6NH11 291 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 H7C1W4 665 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 SMIM22K7EJ46 135 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 NCAM2O15394 837 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 GJB1P08034 283 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 ELOAQ14241 798 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 RAB30Q15771 203 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 PHTF1Q9UMS5 762 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 AOX1Q06278 1338 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 KIF23Q02241 960 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 C21orf2O43822 256 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 LUC7L3O95232 432 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 SYN1P17600 705 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 PTH1RQ03431 593 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 C19orf57Q0VDD7 668 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 NKX1-1Q15270 411 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 AASDHQ4L235 1098 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 PRICKLE2Q7Z3G6 844 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 RIC3Q7Z5B4 369 aa3.48□□□□□ -1.85
CCDC88A-205ENST00000426576 ADAMTS19Q8TE59 1207 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms