RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 CCDC87Q9NVE4 849 aa31.83■■■□□ 2.69
VEGFA-209ENST00000425836 SMIM5Q71RC9 77 aa31.82■■■□□ 2.68
VEGFA-209ENST00000425836 TSR2Q969E8 191 aaKnown RBP31.82■■■□□ 2.68
VEGFA-209ENST00000425836 PNPLA7Q6ZV29 1317 aa31.82■■■□□ 2.68
VEGFA-209ENST00000425836 COL5A3P25940 1745 aaPredicted RBP31.81■■■□□ 2.68
VEGFA-209ENST00000425836 RPS6KA4O75676 772 aa31.81■■■□□ 2.68
VEGFA-209ENST00000425836 PDGFDQ9GZP0 370 aaPredicted RBP31.81■■■□□ 2.68
VEGFA-209ENST00000425836 HNRNPUQ00839 825 aaKnown RBP eCLIP31.8■■■□□ 2.688e-7■□□□□ 10.9
VEGFA-209ENST00000425836 ZBTB1Q9Y2K1 713 aa31.8■■■□□ 2.68
VEGFA-209ENST00000425836 RTCBQ9Y3I0 505 aaKnown RBP31.8■■■□□ 2.68
VEGFA-209ENST00000425836 A1BGP04217 495 aa31.79■■■□□ 2.68
VEGFA-209ENST00000425836 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP31.78■■■□□ 2.68
VEGFA-209ENST00000425836 PHF14O94880 888 aa31.78■■■□□ 2.68
VEGFA-209ENST00000425836 SSFA2P28290 1259 aa31.78■■■□□ 2.68
VEGFA-209ENST00000425836 GOLGA2Q08379 1002 aa31.77■■■□□ 2.68
VEGFA-209ENST00000425836 COL23A1Q86Y22 540 aaPredicted RBP31.77■■■□□ 2.68
VEGFA-209ENST00000425836 FLAD1Q8NFF5 587 aa31.77■■■□□ 2.68
VEGFA-209ENST00000425836 FANCIQ9NVI1 1328 aa31.76■■■□□ 2.67
VEGFA-209ENST00000425836 CANXP27824 592 aaKnown RBP31.76■■■□□ 2.67
VEGFA-209ENST00000425836 DUSP27Q5VZP5 1158 aa31.75■■■□□ 2.67
VEGFA-209ENST00000425836 C8orf58Q8NAV2 365 aa31.75■■■□□ 2.67
VEGFA-209ENST00000425836 SOS1Q07889 1333 aaPredicted RBP31.74■■■□□ 2.67
VEGFA-209ENST00000425836 MYH16Q9H6N6 1097 aa31.74■■■□□ 2.67
VEGFA-209ENST00000425836 TRAPPC3LQ5T215 181 aa31.73■■■□□ 2.67
VEGFA-209ENST00000425836 MYH14Q7Z406 1995 aaKnown RBP31.73■■■□□ 2.67
VEGFA-209ENST00000425836 ELL2O00472 640 aaPredicted RBP31.73■■■□□ 2.67
VEGFA-209ENST00000425836 HOXB7P09629 217 aa31.73■■■□□ 2.67
VEGFA-209ENST00000425836 ADRA2BP18089 450 aa31.73■■■□□ 2.67
VEGFA-209ENST00000425836 EIF2S2P20042 333 aaKnown RBP31.73■■■□□ 2.67
VEGFA-209ENST00000425836 ARHGEF1Q92888 912 aaKnown RBP31.73■■■□□ 2.67
VEGFA-209ENST00000425836 NBPF26B4DH59 902 aa31.72■■■□□ 2.67
VEGFA-209ENST00000425836 PIP4K2AP48426 406 aaPredicted RBP31.72■■■□□ 2.67
VEGFA-209ENST00000425836 NBPF10Q6P3W6 841 aaKnown RBP31.72■■■□□ 2.67
VEGFA-209ENST00000425836 NBPF15Q8N660 670 aa31.72■■■□□ 2.67
VEGFA-209ENST00000425836 E9PSI1 815 aa31.71■■■□□ 2.67
VEGFA-209ENST00000425836 MSH5O43196 834 aa31.71■■■□□ 2.67
VEGFA-209ENST00000425836 EIF5P55010 431 aaKnown RBP31.71■■■□□ 2.67
VEGFA-209ENST00000425836 TSPYL6Q8N831 410 aa31.71■■■□□ 2.67
VEGFA-209ENST00000425836 CDCA7LQ96GN5 454 aa31.71■■■□□ 2.67
VEGFA-209ENST00000425836 SLFN5Q08AF3 891 aa31.7■■■□□ 2.67
VEGFA-209ENST00000425836 UBR3Q6ZT12 1888 aa31.7■■■□□ 2.66
VEGFA-209ENST00000425836 IL6STP40189 918 aaPredicted RBP31.69■■■□□ 2.66
VEGFA-209ENST00000425836 TUBGCP6Q96RT7 1819 aa31.69■■■□□ 2.66
VEGFA-209ENST00000425836 NECTIN2Q92692 538 aa31.68■■■□□ 2.66
VEGFA-209ENST00000425836 QSER1Q2KHR3 1735 aa31.67■■■□□ 2.66
VEGFA-209ENST00000425836 EXOSC9Q06265 439 aaKnown RBP31.67■■■□□ 2.66
VEGFA-209ENST00000425836 COL15A1P39059 1388 aa31.66■■■□□ 2.66
VEGFA-209ENST00000425836 ZBTB7AO95365 584 aa31.66■■■□□ 2.66
VEGFA-209ENST00000425836 RFC4P35249 363 aa31.66■■■□□ 2.66
VEGFA-209ENST00000425836 HDGFL1Q5TGJ6 251 aa31.66■■■□□ 2.66
VEGFA-209ENST00000425836 SLC16A10Q8TF71 515 aa31.66■■■□□ 2.66
VEGFA-209ENST00000425836 ZNF330Q9Y3S2 320 aaPredicted RBP31.66■■■□□ 2.66
VEGFA-209ENST00000425836 ERBB4Q15303 1308 aa31.66■■■□□ 2.66
VEGFA-209ENST00000425836 PDIA6Q15084 440 aa31.65■■■□□ 2.66
VEGFA-209ENST00000425836 CASZ1Q86V15 1759 aa31.65■■■□□ 2.66
VEGFA-209ENST00000425836 TRMT2AQ8IZ69 625 aaKnown RBP31.64■■■□□ 2.66
VEGFA-209ENST00000425836 LAMB4A4D0S4 1761 aa31.64■■■□□ 2.66
VEGFA-209ENST00000425836 TWISTNBQ3B726 338 aaPredicted RBP31.64■■■□□ 2.65
VEGFA-209ENST00000425836 MTFR1LQ9H019 292 aa31.63■■■□□ 2.65
VEGFA-209ENST00000425836 A0A087WZG4 1122 aa31.62■■■□□ 2.65
VEGFA-209ENST00000425836 MYL6BP14649 208 aa31.62■■■□□ 2.65
VEGFA-209ENST00000425836 SRP68Q9UHB9 627 aaKnown RBP31.62■■■□□ 2.65
VEGFA-209ENST00000425836 ZBED9Q6R2W3 1325 aa31.62■■■□□ 2.65
VEGFA-209ENST00000425836 PROSER3Q2NL68 480 aa31.61■■■□□ 2.65
VEGFA-209ENST00000425836 NPM2Q86SE8 214 aaKnown RBP31.61■■■□□ 2.65
VEGFA-209ENST00000425836 ATF5Q9Y2D1 282 aaPredicted RBP31.61■■■□□ 2.65
VEGFA-209ENST00000425836 USP42Q9H9J4 1324 aaKnown RBP31.6■■■□□ 2.65
VEGFA-209ENST00000425836 VAMP4O75379 141 aa31.6■■■□□ 2.65
VEGFA-209ENST00000425836 ANXA1P04083 346 aa31.6■■■□□ 2.65
VEGFA-209ENST00000425836 LRP10Q7Z4F1 713 aa31.6■■■□□ 2.65
VEGFA-209ENST00000425836 DDX21Q9NR30 783 aaKnown RBP eCLIP31.6■■■□□ 2.65
VEGFA-209ENST00000425836 CHPF2Q9P2E5 772 aa31.6■■■□□ 2.65
VEGFA-209ENST00000425836 NARFQ9UHQ1 456 aa31.6■■■□□ 2.65
VEGFA-209ENST00000425836 TBC1D2BQ9UPU7 963 aa31.6■■■□□ 2.65
VEGFA-209ENST00000425836 ZPR1O75312 459 aa31.58■■■□□ 2.65
VEGFA-209ENST00000425836 MSL1Q68DK7 614 aa31.58■■■□□ 2.65
VEGFA-209ENST00000425836 GYS1P13807 737 aa31.57■■■□□ 2.64
VEGFA-209ENST00000425836 USPL1Q5W0Q7 1092 aa31.57■■■□□ 2.64
VEGFA-209ENST00000425836 ARXQ96QS3 562 aa31.57■■■□□ 2.64
VEGFA-209ENST00000425836 CHMP4AQ9BY43 222 aa31.57■■■□□ 2.64
VEGFA-209ENST00000425836 DBF4Q9UBU7 674 aaPredicted RBP31.57■■■□□ 2.64
VEGFA-209ENST00000425836 CCDC30Q5VVM6 783 aa31.56■■■□□ 2.64
VEGFA-209ENST00000425836 DZIP3Q86Y13 1208 aaKnown RBP31.56■■■□□ 2.64
VEGFA-209ENST00000425836 SPON1Q9HCB6 807 aa31.56■■■□□ 2.64
VEGFA-209ENST00000425836 CAMTA2O94983 1202 aa31.54■■■□□ 2.64
VEGFA-209ENST00000425836 BCL2L12Q9HB09 334 aa31.53■■■□□ 2.64
VEGFA-209ENST00000425836 TCERG1O14776 1098 aaKnown RBP31.52■■■□□ 2.64
VEGFA-209ENST00000425836 PTGER2P43116 358 aa31.52■■■□□ 2.64
VEGFA-209ENST00000425836 FKBP8Q14318 412 aa31.52■■■□□ 2.64
VEGFA-209ENST00000425836 TTLL7Q6ZT98 887 aa31.52■■■□□ 2.64
VEGFA-209ENST00000425836 NLGN1Q8N2Q7 840 aa31.52■■■□□ 2.64
VEGFA-209ENST00000425836 SGIP1Q9BQI5 828 aa31.52■■■□□ 2.64
VEGFA-209ENST00000425836 HYPKQ9NX55 129 aa31.51■■■□□ 2.64
VEGFA-209ENST00000425836 C4AP0C0L4 1744 aa31.51■■■□□ 2.63
VEGFA-209ENST00000425836 COPS6Q7L5N1 327 aa31.51■■■□□ 2.63
VEGFA-209ENST00000425836 XAGE3Q8WTP9 111 aa31.5■■■□□ 2.63
VEGFA-209ENST00000425836 AIMP1Q12904 312 aaKnown RBP31.48■■■□□ 2.63
VEGFA-209ENST00000425836 STK31Q9BXU1 1019 aa31.48■■■□□ 2.63
VEGFA-209ENST00000425836 KIF6Q6ZMV9 814 aa31.47■■■□□ 2.63
VEGFA-209ENST00000425836 PHAXQ9H814 394 aaKnown RBP31.47■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms