RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 TMX4Q9H1E5 349 aaPredicted RBP16.92■□□□□ 0.3
SCAF4-202ENST00000399804 KIF3AQ9Y496 699 aa16.92■□□□□ 0.3
SCAF4-202ENST00000399804 H3BQV1 296 aa16.92■□□□□ 0.3
SCAF4-202ENST00000399804 PDE1AP54750 535 aa16.92■□□□□ 0.3
SCAF4-202ENST00000399804 SKOR2Q2VWA4 1001 aaPredicted RBP16.92■□□□□ 0.3
SCAF4-202ENST00000399804 CCDC158Q5M9N0 1113 aa16.92■□□□□ 0.3
SCAF4-202ENST00000399804 IFFO2Q5TF58 517 aa16.92■□□□□ 0.3
SCAF4-202ENST00000399804 USP19O94966 1318 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 GRM8O00222 908 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 LINS1Q8NG48 757 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 DNAJC5Q9H3Z4 198 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 KIAA0232Q92628 1395 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 ZNF853P0CG23 659 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 MCM2P49736 904 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 MCTP1Q6DN14 999 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 ATP6V1DQ9Y5K8 247 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 CDK12Q9NYV4 1490 aaPredicted RBP16.91■□□□□ 0.3
SCAF4-202ENST00000399804 VPS37CA5D8V6 355 aaPredicted RBP16.91■□□□□ 0.3
SCAF4-202ENST00000399804 ALDH1L1O75891 902 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 IQGAP1P46940 1657 aa16.91■□□□□ 0.3
SCAF4-202ENST00000399804 GPTP24298 496 aa16.9■□□□□ 0.3
SCAF4-202ENST00000399804 UPF3BQ9BZI7 483 aaKnown RBP16.9■□□□□ 0.3
SCAF4-202ENST00000399804 SOS1Q07889 1333 aaPredicted RBP16.9■□□□□ 0.3
SCAF4-202ENST00000399804 EIF4A1P60842 406 aaKnown RBP16.9■□□□□ 0.3
SCAF4-202ENST00000399804 FKBP4Q02790 459 aaKnown RBP eCLIP16.9■□□□□ 0.3
SCAF4-202ENST00000399804 PNPLA6Q8IY17 1366 aa16.9■□□□□ 0.3
SCAF4-202ENST00000399804 PSMA5P28066 241 aa16.9■□□□□ 0.3
SCAF4-202ENST00000399804 DDX21Q9NR30 783 aaKnown RBP eCLIP16.9■□□□□ 0.3
SCAF4-202ENST00000399804 TRDNQ13061 729 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 TTC39AQ5SRH9 613 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 BTG4Q9NY30 223 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 KIAA1210Q9ULL0 1709 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 ADAMTS13Q76LX8 1427 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 ISY1Q9ULR0 285 aaKnown RBP16.89■□□□□ 0.29
SCAF4-202ENST00000399804 CSPP1Q1MSJ5 1256 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 PLEKHM2Q8IWE5 1019 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 ECHDC1Q9NTX5 307 aa16.89■□□□□ 0.29
SCAF4-202ENST00000399804 CPSF1Q10570 1443 aaKnown RBP16.88■□□□□ 0.29
SCAF4-202ENST00000399804 MPHOSPH8Q99549 860 aa16.88■□□□□ 0.29
SCAF4-202ENST00000399804 PA2G4Q9UQ80 394 aaKnown RBP16.88■□□□□ 0.29
SCAF4-202ENST00000399804 ABCC4O15439 1325 aa16.88■□□□□ 0.29
SCAF4-202ENST00000399804 ZC3H13Q5T200 1668 aaKnown RBP16.88■□□□□ 0.29
SCAF4-202ENST00000399804 G3V3G9 751 aa16.88■□□□□ 0.29
SCAF4-202ENST00000399804 HOXB7P09629 217 aa16.88■□□□□ 0.29
SCAF4-202ENST00000399804 DCAF8Q5TAQ9 597 aa16.88■□□□□ 0.29
SCAF4-202ENST00000399804 PREX1Q8TCU6 1659 aa16.87■□□□□ 0.29
SCAF4-202ENST00000399804 OTUD7AQ8TE49 926 aaPredicted RBP16.87■□□□□ 0.29
SCAF4-202ENST00000399804 CWC25Q9NXE8 425 aaPredicted RBP16.87■□□□□ 0.29
SCAF4-202ENST00000399804 POLR1AO95602 1720 aaPredicted RBP16.87■□□□□ 0.29
SCAF4-202ENST00000399804 TEX13AQ9BXU3 409 aaPredicted RBP16.87■□□□□ 0.29
SCAF4-202ENST00000399804 MROH2AA6NES4 1674 aa16.86■□□□□ 0.29
SCAF4-202ENST00000399804 TRAK2O60296 914 aa16.86■□□□□ 0.29
SCAF4-202ENST00000399804 BICDL1Q6ZP65 573 aa16.86■□□□□ 0.29
SCAF4-202ENST00000399804 ZNF496Q96IT1 587 aaPredicted RBP16.86■□□□□ 0.29
SCAF4-202ENST00000399804 SLC52A2Q9HAB3 445 aa16.86■□□□□ 0.29
SCAF4-202ENST00000399804 CYP46A1Q9Y6A2 500 aa16.86■□□□□ 0.29
SCAF4-202ENST00000399804 RALYLQ86SE5 291 aaKnown RBP16.86■□□□□ 0.29
SCAF4-202ENST00000399804 TRMT112Q9UI30 125 aaKnown RBP16.86■□□□□ 0.29
SCAF4-202ENST00000399804 TBC1D2BQ9UPU7 963 aa16.86■□□□□ 0.29
SCAF4-202ENST00000399804 CPLX1O14810 134 aa16.85■□□□□ 0.29
SCAF4-202ENST00000399804 TOM1O60784 492 aa16.85■□□□□ 0.29
SCAF4-202ENST00000399804 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.85■□□□□ 0.29
SCAF4-202ENST00000399804 ANKARQ7Z5J8 1434 aa16.85■□□□□ 0.29
SCAF4-202ENST00000399804 UBAP1LF5GYI3 381 aa16.85■□□□□ 0.29
SCAF4-202ENST00000399804 JAKMIP1Q96N16 626 aaKnown RBP16.85■□□□□ 0.29
SCAF4-202ENST00000399804 IFIT5Q13325 482 aaKnown RBP16.84■□□□□ 0.29
SCAF4-202ENST00000399804 METTL24Q5JXM2 366 aa16.84■□□□□ 0.29
SCAF4-202ENST00000399804 MED14O60244 1454 aa16.84■□□□□ 0.29
SCAF4-202ENST00000399804 NBPF7P0C2Y1 421 aaPredicted RBP16.84■□□□□ 0.29
SCAF4-202ENST00000399804 LMBR1LQ6UX01 489 aa16.84■□□□□ 0.29
SCAF4-202ENST00000399804 PCDH11XQ9BZA7 1347 aa16.83■□□□□ 0.29
SCAF4-202ENST00000399804 PCDH11YQ9BZA8 1340 aa16.83■□□□□ 0.29
SCAF4-202ENST00000399804 PNMA6EA0A0J9YXQ4 647 aa16.83■□□□□ 0.29
SCAF4-202ENST00000399804 SF3A1Q15459 793 aaKnown RBP16.83■□□□□ 0.29
SCAF4-202ENST00000399804 CPLX2Q6PUV4 134 aaKnown RBP16.83■□□□□ 0.29
SCAF4-202ENST00000399804 CHMP4CQ96CF2 233 aa16.83■□□□□ 0.29
SCAF4-202ENST00000399804 ACSBG1Q96GR2 724 aa16.83■□□□□ 0.29
SCAF4-202ENST00000399804 NEURL4Q96JN8 1562 aa16.83■□□□□ 0.29
SCAF4-202ENST00000399804 GIGYF1O75420 1035 aaPredicted RBP16.83■□□□□ 0.28
SCAF4-202ENST00000399804 DLC1Q96QB1 1528 aa16.83■□□□□ 0.28
SCAF4-202ENST00000399804 FOSBP53539 338 aa16.83■□□□□ 0.28
SCAF4-202ENST00000399804 BRPF1P55201 1214 aaPredicted RBP16.82■□□□□ 0.28
SCAF4-202ENST00000399804 DNTTIP2Q5QJE6 756 aaKnown RBP16.82■□□□□ 0.28
SCAF4-202ENST00000399804 CWC22Q9HCG8 908 aaKnown RBP16.82■□□□□ 0.28
SCAF4-202ENST00000399804 PRPF40BQ6NWY9 871 aaKnown RBP16.82■□□□□ 0.28
SCAF4-202ENST00000399804 SYNE3Q6ZMZ3 975 aa16.82■□□□□ 0.28
SCAF4-202ENST00000399804 HSP90AB3PQ58FF7 597 aa16.82■□□□□ 0.28
SCAF4-202ENST00000399804 LMTK3Q96Q04 1460 aa16.82■□□□□ 0.28
SCAF4-202ENST00000399804 TMEM131LA2VDJ0 1609 aa16.82■□□□□ 0.28
SCAF4-202ENST00000399804 MCM4P33991 863 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 DDB1Q16531 1140 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 BLOC1S2Q6QNY1 142 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 KIF24Q5T7B8 1368 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 SPATA31D1Q6ZQQ2 1576 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 PHKG2P15735 406 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 USP44Q9H0E7 712 aa16.81■□□□□ 0.28
SCAF4-202ENST00000399804 CIZ1Q9ULV3 898 aaPredicted RBP16.81■□□□□ 0.28
SCAF4-202ENST00000399804 IFIT1P09914 478 aaKnown RBP16.8■□□□□ 0.28
SCAF4-202ENST00000399804 CASTP20810 708 aaKnown RBP16.8■□□□□ 0.28
SCAF4-202ENST00000399804 ERBB3P21860 1342 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms