RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 C20orf194Q5TEA3 1177 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 PIK3C2GO75747 1445 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 SLFN5Q08AF3 891 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 BECN1Q14457 450 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 GIMAP6Q6P9H5 292 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 AMOTL1Q8IY63 956 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 IRF2BPLQ9H1B7 796 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 EFCC1Q9HA90 598 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 CDC42BPGQ6DT37 1551 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 PIK3R4Q99570 1358 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 CGNL1Q0VF96 1302 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 RIMS2Q9UQ26 1411 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 COQ9O75208 318 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 ACRBPQ8NEB7 543 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 SENP3Q9H4L4 574 aaPredicted RBP7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 NPC1L1Q9UHC9 1359 aa7.99□□□□□ -1.13
TM9SF4-202ENST00000398022 RGS12O14924 1447 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 SMAPO00193 183 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 CHGAP10645 457 aaKnown RBP7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 BDNFP23560 247 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 C1QTNF12Q5T7M4 302 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 PXDNQ92626 1479 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 GLI3P10071 1580 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 ALS2Q96Q42 1657 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 IRX5P78411 483 aaPredicted RBP7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 UPF2Q9HAU5 1272 aaKnown RBP7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 KANK1Q14678 1352 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 PLEKHH1Q9ULM0 1364 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 NINLQ9Y2I6 1382 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 NWD2Q9ULI1 1742 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 ZC3H12AQ5D1E8 599 aaKnown RBP7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 MAPK8IP3Q9UPT6 1336 aa7.98□□□□□ -1.13
TM9SF4-202ENST00000398022 CT47A1Q5JQC4 288 aaPredicted RBP7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 ABCF2Q9UG63 623 aa7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 PIP4K2BP78356 416 aa7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 ZNF853P0CG23 659 aa7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 GYS2P54840 703 aa7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 SREK1Q8WXA9 508 aaKnown RBP7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 CTDP1Q9Y5B0 961 aaPredicted RBP7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 ZNF521Q96K83 1311 aa7.97□□□□□ -1.13
TM9SF4-202ENST00000398022 PES1O00541 588 aaKnown RBP7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 APAF1O14727 1248 aa7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 HSP90AB2PQ58FF8 381 aa7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 PTCH1Q13635 1447 aa7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 SYNRGQ9UMZ2 1314 aa7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 NAP1L1P55209 391 aaKnown RBP7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 PDE3AQ14432 1141 aa7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 CCDC146Q8IYE0 955 aa7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 CDCA7Q9BWT1 371 aaPredicted RBP7.96□□□□□ -1.13
TM9SF4-202ENST00000398022 SLC4A3P48751 1232 aa7.96□□□□□ -1.14
TM9SF4-202ENST00000398022 CDC37Q16543 378 aaPredicted RBP7.96□□□□□ -1.14
TM9SF4-202ENST00000398022 C8orf34Q49A92 452 aa7.96□□□□□ -1.14
TM9SF4-202ENST00000398022 SKAP1Q86WV1 359 aa7.96□□□□□ -1.14
TM9SF4-202ENST00000398022 CTAGE5O15320 804 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 ZSCAN20P17040 1043 aaPredicted RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 RANBP17Q9H2T7 1088 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 GNL3LQ9NVN8 582 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 PUF60Q9UHX1 559 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 MYOM2P54296 1465 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 NRXN1Q9ULB1 1477 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 HMGN5P82970 282 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 WWC3Q9ULE0 1092 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 PARNO95453 639 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 PAX7P23759 505 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 CD151P48509 253 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 FBXO9Q9UK97 447 aaPredicted RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 ADGRB2O60241 1585 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 KIF16BQ96L93 1317 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 RREB1Q92766 1687 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 CCDC194A0A1B0GVG4 234 aa7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 KIF1CO43896 1103 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 SF3B2Q13435 895 aaKnown RBP7.95□□□□□ -1.14
TM9SF4-202ENST00000398022 TOPAZ1Q8N9V7 1692 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 THSD7AQ9UPZ6 1657 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 PMFBP1Q8TBY8 1022 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 NCAPGQ9BPX3 1015 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 PDZRN3Q9UPQ7 1066 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 WNK3Q9BYP7 1800 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 IPO7O95373 1038 aaKnown RBP7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 NEFHP12036 1026 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 SMC4Q9NTJ3 1288 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 NRBP1Q9UHY1 535 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 METP08581 1390 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 JCADQ9P266 1359 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 PEX19P40855 299 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 CCT2P78371 535 aaKnown RBP7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 SF3A1Q15459 793 aaKnown RBP7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 TSR1Q2NL82 804 aaKnown RBP7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 TRMT2AQ8IZ69 625 aaKnown RBP7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 ARPC5LQ9BPX5 153 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 KIF1AQ12756 1690 aa7.94□□□□□ -1.14
TM9SF4-202ENST00000398022 PPP1R12AO14974 1030 aaPredicted RBP7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 EIF3JO75822 258 aaKnown RBP7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 NAT1P18440 290 aa7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 TXNDC2Q86VQ3 553 aa7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 ARIH1Q9Y4X5 557 aaPredicted RBP7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 C11orf96Q7Z7L8 435 aa7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 FRAT1Q92837 279 aaPredicted RBP7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 U2SURPO15042 1029 aaKnown RBP7.93□□□□□ -1.14
TM9SF4-202ENST00000398022 ICE2Q659A1 982 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms