RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 MSH6P52701 1360 aa5.76□□□□□ -1.49
PCDH9-201ENST00000377861 CEP89Q96ST8 783 aa5.76□□□□□ -1.49
PCDH9-201ENST00000377861 TRAPPC8Q9Y2L5 1435 aa5.76□□□□□ -1.49
PCDH9-201ENST00000377861 KIF5CO60282 957 aa5.76□□□□□ -1.49
PCDH9-201ENST00000377861 FAM114A1Q8IWE2 563 aa5.76□□□□□ -1.49
PCDH9-201ENST00000377861 GABPB1Q06547 395 aaPredicted RBP5.75□□□□□ -1.49
PCDH9-201ENST00000377861 AFAP1Q8N556 730 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 NUP62CLQ9H1M0 184 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 PLEKHG3A1L390 1219 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 EXOSC9Q06265 439 aaKnown RBP5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ANKRD18AQ8IVF6 992 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ABCD1P33897 745 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 PLB1Q6P1J6 1458 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 CCDC148Q8NFR7 591 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ATP8B2P98198 1209 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 USP26Q9BXU7 913 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 CEP126Q9P2H0 1117 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 TRIM27P14373 513 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 MCTP1Q6DN14 999 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 PRAG1Q86YV5 1406 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 KDM5DQ9BY66 1539 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 CCDC102BQ68D86 513 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 CFAP70Q5T0N1 1121 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 USP37Q86T82 979 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 TAX1BP1Q86VP1 789 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 VTI1AQ96AJ9 217 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 CABP1Q9NZU7 370 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 LINS1Q8NG48 757 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 PRG4Q92954 1404 aaPredicted RBP5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ERBB4Q15303 1308 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ZRSR2Q15696 482 aaKnown RBP5.75□□□□□ -1.49
PCDH9-201ENST00000377861 NAA16Q6N069 864 aaPredicted RBP5.75□□□□□ -1.49
PCDH9-201ENST00000377861 RIMS2Q9UQ26 1411 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 KDM4AO75164 1064 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ZSCAN22P10073 491 aaPredicted RBP5.75□□□□□ -1.49
PCDH9-201ENST00000377861 RETREG2Q8NC44 543 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 TSGA10IPQ3SY00 556 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 ANKLE2Q86XL3 938 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 CEP112Q8N8E3 955 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 TRIM14Q14142 442 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 VPS36Q86VN1 386 aa5.75□□□□□ -1.49
PCDH9-201ENST00000377861 MLKLQ8NB16 471 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 KRT83P78385 493 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 ARFGAP3Q9NP61 516 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 WAPLQ7Z5K2 1190 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 ARID3CA6NKF2 412 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 TAF7LQ5H9L4 462 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 NAP1L3Q99457 506 aaPredicted RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 FYB1O15117 783 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 STX6O43752 255 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 CALML3P27482 149 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 CLSTN1O94985 981 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 B4GALNT4Q76KP1 1039 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 CCAR2Q8N163 923 aaKnown RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 NOC3LQ8WTT2 800 aaKnown RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 TPD52L1Q16890 204 aaPredicted RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 C14orf37Q86TY3 774 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 HDAC9Q9UKV0 1011 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 DUOX2Q9NRD8 1548 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 TMCO3Q6UWJ1 677 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 TAOK3Q9H2K8 898 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 DAAM1Q9Y4D1 1078 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 ARFGAP2Q8N6H7 521 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 TRIML1Q8N9V2 468 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 RUBCNQ92622 972 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 LNPKQ9C0E8 428 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 PDRG1Q9NUG6 133 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 BAG4O95429 457 aaKnown RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 ZNF713Q8N859 430 aaPredicted RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 XRCC6P12956 609 aaKnown RBP eCLIP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 DMRT2Q9Y5R5 561 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 NUP58Q9BVL2 599 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 USO1O60763 962 aaKnown RBP5.74□□□□□ -1.49
PCDH9-201ENST00000377861 USP5P45974 858 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 SLMAPQ14BN4 828 aa5.74□□□□□ -1.49
PCDH9-201ENST00000377861 UQCRFS1P1P0C7P4 283 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 TNPO1Q92973 898 aaKnown RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 CCDC57Q2TAC2 916 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 TTC12Q9H892 705 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 MSL3Q8N5Y2 521 aaKnown RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 NOLC1Q14978 699 aaKnown RBP eCLIP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 ARMC9Q7Z3E5 817 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 CETN2P41208 172 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 NUTM2DQ5VT03 806 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 NUTM2AQ8IVF1 878 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 YEATS4O95619 227 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 MAGEC2Q9UBF1 373 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 HECW1Q76N89 1606 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 CDCA7LQ96GN5 454 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 USH1CQ9Y6N9 552 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 KIF5BP33176 963 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 ARID4AP29374 1257 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 LZTS2Q9BRK4 669 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 SCP2P22307 547 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 TIGD1Q96MW7 591 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 CCDC94Q9BW85 323 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 GZF1Q9H116 711 aaPredicted RBP5.73□□□□□ -1.49
PCDH9-201ENST00000377861 RNF214Q8ND24 703 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 FMNL2Q96PY5 1086 aa5.73□□□□□ -1.49
PCDH9-201ENST00000377861 TSKSQ9UJT2 592 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms