RNA–Protein interactions for RNA: ENST00000371419.6

PFDN4-201, Transcript of prefoldin subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFDN4, Length 1,462 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN4-201ENST00000371419 USP16Q9Y5T5 823 aa20.69■□□□□ 0.9
PFDN4-201ENST00000371419 PNPLA7Q6ZV29 1317 aa20.69■□□□□ 0.9
PFDN4-201ENST00000371419 MYH14Q7Z406 1995 aaKnown RBP20.69■□□□□ 0.9
PFDN4-201ENST00000371419 FLAD1Q8NFF5 587 aa20.69■□□□□ 0.9
PFDN4-201ENST00000371419 RTCBQ9Y3I0 505 aaKnown RBP20.69■□□□□ 0.9
PFDN4-201ENST00000371419 QSER1Q2KHR3 1735 aa20.68■□□□□ 0.9
PFDN4-201ENST00000371419 RPS6KA4O75676 772 aa20.68■□□□□ 0.9
PFDN4-201ENST00000371419 SSFA2P28290 1259 aa20.68■□□□□ 0.9
PFDN4-201ENST00000371419 UBR3Q6ZT12 1888 aa20.67■□□□□ 0.9
PFDN4-201ENST00000371419 TUBGCP6Q96RT7 1819 aa20.67■□□□□ 0.9
PFDN4-201ENST00000371419 PHF14O94880 888 aa20.67■□□□□ 0.9
PFDN4-201ENST00000371419 AMIGO3Q86WK7 504 aa20.67■□□□□ 0.9
PFDN4-201ENST00000371419 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.66■□□□□ 0.9
PFDN4-201ENST00000371419 ZBTB1Q9Y2K1 713 aa20.66■□□□□ 0.9
PFDN4-201ENST00000371419 A1BGP04217 495 aa20.65■□□□□ 0.9
PFDN4-201ENST00000371419 ADRA2BP18089 450 aa20.65■□□□□ 0.9
PFDN4-201ENST00000371419 KRT24Q2M2I5 525 aa20.65■□□□□ 0.9
PFDN4-201ENST00000371419 COL23A1Q86Y22 540 aaPredicted RBP20.65■□□□□ 0.9
PFDN4-201ENST00000371419 TSR2Q969E8 191 aaKnown RBP20.65■□□□□ 0.9
PFDN4-201ENST00000371419 PDGFDQ9GZP0 370 aaPredicted RBP20.65■□□□□ 0.9
PFDN4-201ENST00000371419 MSH5O43196 834 aa20.64■□□□□ 0.89
PFDN4-201ENST00000371419 CANXP27824 592 aaKnown RBP20.64■□□□□ 0.89
PFDN4-201ENST00000371419 HNRNPUQ00839 825 aaKnown RBP eCLIP20.64■□□□□ 0.89
PFDN4-201ENST00000371419 GOLGA2Q08379 1002 aa20.64■□□□□ 0.89
PFDN4-201ENST00000371419 TRAPPC3LQ5T215 181 aa20.64■□□□□ 0.89
PFDN4-201ENST00000371419 SMIM5Q71RC9 77 aa20.64■□□□□ 0.89
PFDN4-201ENST00000371419 MYH16Q9H6N6 1097 aa20.64■□□□□ 0.89
PFDN4-201ENST00000371419 LAMB4A4D0S4 1761 aa20.64■□□□□ 0.89
PFDN4-201ENST00000371419 HOXB7P09629 217 aa20.63■□□□□ 0.89
PFDN4-201ENST00000371419 SPINK5Q9NQ38 1064 aaPredicted RBP20.63■□□□□ 0.89
PFDN4-201ENST00000371419 CASZ1Q86V15 1759 aa20.63■□□□□ 0.89
PFDN4-201ENST00000371419 SOS1Q07889 1333 aaPredicted RBP20.63■□□□□ 0.89
PFDN4-201ENST00000371419 FANCIQ9NVI1 1328 aa20.63■□□□□ 0.89
PFDN4-201ENST00000371419 DUSP27Q5VZP5 1158 aa20.62■□□□□ 0.89
PFDN4-201ENST00000371419 IL6STP40189 918 aaPredicted RBP20.62■□□□□ 0.89
PFDN4-201ENST00000371419 SLC16A10Q8TF71 515 aa20.62■□□□□ 0.89
PFDN4-201ENST00000371419 ARHGEF1Q92888 912 aaKnown RBP20.62■□□□□ 0.89
PFDN4-201ENST00000371419 EIF2S2P20042 333 aaKnown RBP20.61■□□□□ 0.89
PFDN4-201ENST00000371419 EIF5P55010 431 aaKnown RBP20.61■□□□□ 0.89
PFDN4-201ENST00000371419 C8orf58Q8NAV2 365 aa20.61■□□□□ 0.89
PFDN4-201ENST00000371419 NBPF26B4DH59 902 aa20.6■□□□□ 0.89
PFDN4-201ENST00000371419 E9PSI1 815 aa20.6■□□□□ 0.89
PFDN4-201ENST00000371419 RFC4P35249 363 aa20.6■□□□□ 0.89
PFDN4-201ENST00000371419 NBPF10Q6P3W6 841 aaKnown RBP20.6■□□□□ 0.89
PFDN4-201ENST00000371419 NBPF15Q8N660 670 aa20.6■□□□□ 0.89
PFDN4-201ENST00000371419 ERBB4Q15303 1308 aa20.6■□□□□ 0.89
PFDN4-201ENST00000371419 COL15A1P39059 1388 aa20.59■□□□□ 0.89
PFDN4-201ENST00000371419 ELL2O00472 640 aaPredicted RBP20.59■□□□□ 0.89
PFDN4-201ENST00000371419 ZBTB7AO95365 584 aa20.59■□□□□ 0.89
PFDN4-201ENST00000371419 PIP4K2AP48426 406 aaPredicted RBP20.59■□□□□ 0.89
PFDN4-201ENST00000371419 NPM2Q86SE8 214 aaKnown RBP20.59■□□□□ 0.89
PFDN4-201ENST00000371419 A0A087WZG4 1122 aa20.58■□□□□ 0.89
PFDN4-201ENST00000371419 HDGFL1Q5TGJ6 251 aa20.58■□□□□ 0.89
PFDN4-201ENST00000371419 MTFR1LQ9H019 292 aa20.58■□□□□ 0.89
PFDN4-201ENST00000371419 ZNF330Q9Y3S2 320 aaPredicted RBP20.58■□□□□ 0.89
PFDN4-201ENST00000371419 SLFN5Q08AF3 891 aa20.57■□□□□ 0.88
PFDN4-201ENST00000371419 NECTIN2Q92692 538 aa20.57■□□□□ 0.88
PFDN4-201ENST00000371419 TSPYL6Q8N831 410 aa20.56■□□□□ 0.88
PFDN4-201ENST00000371419 CHMP4AQ9BY43 222 aa20.56■□□□□ 0.88
PFDN4-201ENST00000371419 EXOSC9Q06265 439 aaKnown RBP20.56■□□□□ 0.88
PFDN4-201ENST00000371419 TWISTNBQ3B726 338 aaPredicted RBP20.56■□□□□ 0.88
PFDN4-201ENST00000371419 CDCA7LQ96GN5 454 aa20.56■□□□□ 0.88
PFDN4-201ENST00000371419 SPON1Q9HCB6 807 aa20.56■□□□□ 0.88
PFDN4-201ENST00000371419 C4AP0C0L4 1744 aa20.55■□□□□ 0.88
PFDN4-201ENST00000371419 USP42Q9H9J4 1324 aaKnown RBP20.55■□□□□ 0.88
PFDN4-201ENST00000371419 ZPR1O75312 459 aa20.55■□□□□ 0.88
PFDN4-201ENST00000371419 MYL6BP14649 208 aa20.55■□□□□ 0.88
PFDN4-201ENST00000371419 PDIA6Q15084 440 aa20.55■□□□□ 0.88
PFDN4-201ENST00000371419 NARFQ9UHQ1 456 aa20.55■□□□□ 0.88
PFDN4-201ENST00000371419 ATF5Q9Y2D1 282 aaPredicted RBP20.55■□□□□ 0.88
PFDN4-201ENST00000371419 GTF3C3Q9Y5Q9 886 aa20.55■□□□□ 0.88
PFDN4-201ENST00000371419 SRP68Q9UHB9 627 aaKnown RBP20.54■□□□□ 0.88
PFDN4-201ENST00000371419 ZBED9Q6R2W3 1325 aa20.54■□□□□ 0.88
PFDN4-201ENST00000371419 GYS1P13807 737 aa20.53■□□□□ 0.88
PFDN4-201ENST00000371419 ARXQ96QS3 562 aa20.53■□□□□ 0.88
PFDN4-201ENST00000371419 DDX21Q9NR30 783 aaKnown RBP eCLIP20.53■□□□□ 0.88
PFDN4-201ENST00000371419 CHPF2Q9P2E5 772 aa20.53■□□□□ 0.88
PFDN4-201ENST00000371419 DBF4Q9UBU7 674 aaPredicted RBP20.53■□□□□ 0.88
PFDN4-201ENST00000371419 TBC1D2BQ9UPU7 963 aa20.53■□□□□ 0.88
PFDN4-201ENST00000371419 PROSER3Q2NL68 480 aa20.52■□□□□ 0.88
PFDN4-201ENST00000371419 CCDC30Q5VVM6 783 aa20.52■□□□□ 0.88
PFDN4-201ENST00000371419 USPL1Q5W0Q7 1092 aa20.52■□□□□ 0.88
PFDN4-201ENST00000371419 MSL1Q68DK7 614 aa20.52■□□□□ 0.88
PFDN4-201ENST00000371419 DZIP3Q86Y13 1208 aaKnown RBP20.52■□□□□ 0.88
PFDN4-201ENST00000371419 TRMT2AQ8IZ69 625 aaKnown RBP20.52■□□□□ 0.88
PFDN4-201ENST00000371419 NLGN1Q8N2Q7 840 aa20.51■□□□□ 0.87
PFDN4-201ENST00000371419 VAMP4O75379 141 aa20.5■□□□□ 0.87
PFDN4-201ENST00000371419 ANXA1P04083 346 aa20.5■□□□□ 0.87
PFDN4-201ENST00000371419 LRP10Q7Z4F1 713 aa20.5■□□□□ 0.87
PFDN4-201ENST00000371419 SRCAPQ6ZRS2 3230 aa20.5■□□□□ 0.87
PFDN4-201ENST00000371419 POLD1P28340 1107 aa20.5■□□□□ 0.87
PFDN4-201ENST00000371419 HYPKQ9NX55 129 aa20.5■□□□□ 0.87
PFDN4-201ENST00000371419 CAMTA2O94983 1202 aa20.49■□□□□ 0.87
PFDN4-201ENST00000371419 PTGER2P43116 358 aa20.49■□□□□ 0.87
PFDN4-201ENST00000371419 FKBP8Q14318 412 aa20.49■□□□□ 0.87
PFDN4-201ENST00000371419 SGIP1Q9BQI5 828 aa20.49■□□□□ 0.87
PFDN4-201ENST00000371419 KIF6Q6ZMV9 814 aa20.48■□□□□ 0.87
PFDN4-201ENST00000371419 TTLL7Q6ZT98 887 aa20.48■□□□□ 0.87
PFDN4-201ENST00000371419 STK31Q9BXU1 1019 aa20.48■□□□□ 0.87
PFDN4-201ENST00000371419 BCL2L12Q9HB09 334 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms