RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 RFX1P22670 979 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 NR6A1Q15406 480 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 PRPF38BQ5VTL8 546 aaKnown RBP3.37□□□□□ -1.87
VPS54-202ENST00000354504 EMID1Q96A84 441 aaPredicted RBP3.37□□□□□ -1.87
VPS54-202ENST00000354504 ZNF330Q9Y3S2 320 aaPredicted RBP3.37□□□□□ -1.87
VPS54-202ENST00000354504 PARD3Q8TEW0 1356 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 BLMP54132 1417 aaPredicted RBP3.37□□□□□ -1.87
VPS54-202ENST00000354504 RGPD2P0DJD1 1756 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 GFRA3O60609 400 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 DESI1Q6ICB0 168 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 ADAMTS7Q9UKP4 1686 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 PIK3CDO00329 1044 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 SLC19A1P41440 591 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 SRPK2P78362 688 aaKnown RBP3.37□□□□□ -1.87
VPS54-202ENST00000354504 MORN1Q5T089 497 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 CFAP70Q5T0N1 1121 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 BRICD5Q6PL45 260 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 OCSTAMPQ9BR26 566 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 PRDM9Q9NQV7 894 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 TOR4AQ9NXH8 423 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 SLIT1O75093 1534 aa3.37□□□□□ -1.87
VPS54-202ENST00000354504 CEP170BQ9Y4F5 1589 aaPredicted RBP3.36□□□□□ -1.87
VPS54-202ENST00000354504 ACIN1Q9UKV3 1341 aaKnown RBP3.36□□□□□ -1.87
VPS54-202ENST00000354504 FDX1P10109 184 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 HSPA5P11021 654 aaKnown RBP3.36□□□□□ -1.87
VPS54-202ENST00000354504 WNT7BP56706 349 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 CCDC125Q86Z20 511 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 PRR7Q8TB68 274 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 SLC27A5Q9Y2P5 690 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 STRCQ7RTU9 1775 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 SHANK3Q9BYB0 1731 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 LMO7Q8WWI1 1683 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 A2ML1A8K2U0 1454 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 ARHGAP23Q9P227 1491 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 SBNO2Q9Y2G9 1366 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 WNT7AO00755 349 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 LCE2BO14633 110 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 MYT1Q01538 1121 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 TMEM259Q4ZIN3 620 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 CDCA8Q53HL2 280 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 PCDHB3Q9Y5E6 796 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 ABCA3Q99758 1704 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 USP47Q96K76 1375 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 PLEKHD1A6NEE1 506 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 FMNL1O95466 1100 aaPredicted RBP3.36□□□□□ -1.87
VPS54-202ENST00000354504 CFHP08603 1231 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 ITGAEP38570 1179 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 TREML4Q6UXN2 200 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 AFAP1Q8N556 730 aa3.36□□□□□ -1.87
VPS54-202ENST00000354504 NWD1Q149M9 1564 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 INSRP06213 1382 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 RNF123Q5XPI4 1314 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 NUTM2BA6NNL0 878 aaPredicted RBP3.35□□□□□ -1.87
VPS54-202ENST00000354504 NUTM2EB1AL46 878 aaPredicted RBP3.35□□□□□ -1.87
VPS54-202ENST00000354504 NUTM2DQ5VT03 806 aaPredicted RBP3.35□□□□□ -1.87
VPS54-202ENST00000354504 TRIM67Q6ZTA4 783 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 NUTM1Q86Y26 1132 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 NUTM2AQ8IVF1 878 aaPredicted RBP3.35□□□□□ -1.87
VPS54-202ENST00000354504 PRKD2Q9BZL6 878 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 MAP10Q9P2G4 905 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 ATP6V1AP38606 617 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 TRIM52Q96A61 297 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 SLAIN2Q9P270 581 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 LRRC7Q96NW7 1537 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 LTN1O94822 1766 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 SCAF11Q99590 1463 aaKnown RBP3.35□□□□□ -1.87
VPS54-202ENST00000354504 GLI3P10071 1580 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 RGPD5Q99666 1765 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 DXOO77932 396 aaKnown RBP3.35□□□□□ -1.87
VPS54-202ENST00000354504 TSGA10IPQ3SY00 556 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 HDGFL1Q5TGJ6 251 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 SENP2Q9HC62 589 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 PKD2L1Q9P0L9 805 aa3.35□□□□□ -1.87
VPS54-202ENST00000354504 CASZ1Q86V15 1759 aa3.34□□□□□ -1.87
VPS54-202ENST00000354504 ALS2Q96Q42 1657 aa3.34□□□□□ -1.87
VPS54-202ENST00000354504 CD2BP2O95400 341 aaKnown RBP3.34□□□□□ -1.87
VPS54-202ENST00000354504 SLC6A16Q9GZN6 736 aa3.34□□□□□ -1.87
VPS54-202ENST00000354504 STK17AQ9UEE5 414 aa3.34□□□□□ -1.87
VPS54-202ENST00000354504 TECPR2O15040 1411 aa3.34□□□□□ -1.87
VPS54-202ENST00000354504 COL18A1P39060 1754 aa3.34□□□□□ -1.87
VPS54-202ENST00000354504 C6orf229H3BNL8 230 aa3.34□□□□□ -1.88
VPS54-202ENST00000354504 ARID4BQ4LE39 1312 aaPredicted RBP3.34□□□□□ -1.88
VPS54-202ENST00000354504 TLL1O43897 1013 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 NBPF1Q3BBV0 1214 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 SNIP1Q8TAD8 396 aaKnown RBP3.33□□□□□ -1.88
VPS54-202ENST00000354504 HIRIP3Q9BW71 556 aaPredicted RBP3.33□□□□□ -1.88
VPS54-202ENST00000354504 WNK3Q9BYP7 1800 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.33□□□□□ -1.88
VPS54-202ENST00000354504 RNF223E7ERA6 249 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 MTMR2Q13614 643 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 CDK11AQ9UQ88 783 aaPredicted RBP3.33□□□□□ -1.88
VPS54-202ENST00000354504 CCER2I3L3R5 266 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 GAS2L2Q8NHY3 880 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 TONSLQ96HA7 1378 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 DIP2AQ14689 1571 aa3.33□□□□□ -1.88
VPS54-202ENST00000354504 SMG6Q86US8 1419 aaKnown RBP3.33□□□□□ -1.88
VPS54-202ENST00000354504 LGR5O75473 907 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 TBC1D9Q6ZT07 1266 aa3.32□□□□□ -1.88
VPS54-202ENST00000354504 CALR3Q96L12 384 aaKnown RBP3.32□□□□□ -1.88
VPS54-202ENST00000354504 FBXO45P0C2W1 286 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms