RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 RGPD2P0DJD1 1756 aa11.07□□□□□ -0.64
CD44-205ENST00000352818 MAP3K19Q56UN5 1328 aa11.07□□□□□ -0.64
CD44-205ENST00000352818 POLRMTO00411 1230 aaKnown RBP11.06□□□□□ -0.64
CD44-205ENST00000352818 DLL1O00548 723 aa11.06□□□□□ -0.64
CD44-205ENST00000352818 HOXC9P31274 260 aa11.06□□□□□ -0.64
CD44-205ENST00000352818 FXR1P51114 621 aaKnown RBP eCLIP11.06□□□□□ -0.64
CD44-205ENST00000352818 ERFEQ4G0M1 354 aa11.06□□□□□ -0.64
CD44-205ENST00000352818 CGNL1Q0VF96 1302 aa11.06□□□□□ -0.64
CD44-205ENST00000352818 MYBBP1AQ9BQG0 1328 aaKnown RBP11.06□□□□□ -0.64
CD44-205ENST00000352818 PCDH11XQ9BZA7 1347 aa11.06□□□□□ -0.64
CD44-205ENST00000352818 PCDH11YQ9BZA8 1340 aa11.06□□□□□ -0.64
CD44-205ENST00000352818 ADAMTSL1Q8N6G6 1762 aa11.05□□□□□ -0.64
CD44-205ENST00000352818 CASP8AP2Q9UKL3 1982 aa11.05□□□□□ -0.64
CD44-205ENST00000352818 PER1O15534 1290 aaPredicted RBP11.05□□□□□ -0.64
CD44-205ENST00000352818 ADRA2BP18089 450 aa11.05□□□□□ -0.64
CD44-205ENST00000352818 MAP1SQ66K74 1059 aaPredicted RBP11.05□□□□□ -0.64
CD44-205ENST00000352818 L3MBTL3Q96JM7 780 aaPredicted RBP11.05□□□□□ -0.64
CD44-205ENST00000352818 POLR3GLQ9BT43 218 aa11.05□□□□□ -0.64
CD44-205ENST00000352818 ATG3Q9NT62 314 aa11.05□□□□□ -0.64
CD44-205ENST00000352818 ZNF219Q9P2Y4 722 aaPredicted RBP11.05□□□□□ -0.64
CD44-205ENST00000352818 ABT1Q9ULW3 272 aaKnown RBP11.05□□□□□ -0.64
CD44-205ENST00000352818 ITGB4P16144 1822 aa11.05□□□□□ -0.64
CD44-205ENST00000352818 INSRP06213 1382 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 NPC1L1Q9UHC9 1359 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 RPS6KA4O75676 772 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 TM4SF1P30408 202 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 RFC4P35249 363 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 NKX1-1Q15270 411 aaPredicted RBP11.04□□□□□ -0.64
CD44-205ENST00000352818 CCDC184Q52MB2 194 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 RC3H1Q5TC82 1133 aaKnown RBP11.04□□□□□ -0.64
CD44-205ENST00000352818 CNTROBQ8N137 903 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 BEGAINQ9BUH8 593 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 MON2Q7Z3U7 1717 aa11.04□□□□□ -0.64
CD44-205ENST00000352818 TTLL6Q8N841 843 aa11.03□□□□□ -0.64
CD44-205ENST00000352818 ZBED9Q6R2W3 1325 aa11.03□□□□□ -0.64
CD44-205ENST00000352818 EVC2Q86UK5 1308 aa11.03□□□□□ -0.64
CD44-205ENST00000352818 GRM1Q13255 1194 aa11.02□□□□□ -0.65
CD44-205ENST00000352818 EAPPQ56P03 285 aaPredicted RBP11.02□□□□□ -0.65
CD44-205ENST00000352818 RAPGEF4Q8WZA2 1011 aa11.02□□□□□ -0.65
CD44-205ENST00000352818 GCC1Q96CN9 775 aa11.02□□□□□ -0.65
CD44-205ENST00000352818 DDX21Q9NR30 783 aaKnown RBP eCLIP11.02□□□□□ -0.65
CD44-205ENST00000352818 CNTNAP4Q9C0A0 1308 aa11.02□□□□□ -0.65
CD44-205ENST00000352818 USP42Q9H9J4 1324 aaKnown RBP11.02□□□□□ -0.65
CD44-205ENST00000352818 CCDC88AQ3V6T2 1871 aa11.02□□□□□ -0.65
CD44-205ENST00000352818 IQCA1LA6NCM1 817 aa11.01□□□□□ -0.65
CD44-205ENST00000352818 TATP17735 454 aaPredicted RBP11.01□□□□□ -0.65
CD44-205ENST00000352818 HNRNPUQ00839 825 aaKnown RBP eCLIP11.01□□□□□ -0.65
CD44-205ENST00000352818 CST9Q5W186 159 aa11.01□□□□□ -0.65
CD44-205ENST00000352818 MAP2K2P36507 400 aa11□□□□□ -0.65
CD44-205ENST00000352818 ECE1P42892 770 aa11□□□□□ -0.65
CD44-205ENST00000352818 COL6A3P12111 3177 aa11□□□□□ -0.65
CD44-205ENST00000352818 CARMIL3Q8ND23 1372 aa11□□□□□ -0.65
CD44-205ENST00000352818 CA12O43570 354 aa10.99□□□□□ -0.65
CD44-205ENST00000352818 PUS7Q96PZ0 661 aaKnown RBP10.99□□□□□ -0.65
CD44-205ENST00000352818 ZIC5Q96T25 663 aa10.99□□□□□ -0.65
CD44-205ENST00000352818 LTBP3Q9NS15 1303 aa10.99□□□□□ -0.65
CD44-205ENST00000352818 MYH14Q7Z406 1995 aaKnown RBP10.98□□□□□ -0.65
CD44-205ENST00000352818 C21orf2O43822 256 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 EPHX2P34913 555 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 PAXIP1Q6ZW49 1069 aaPredicted RBP10.98□□□□□ -0.65
CD44-205ENST00000352818 C2CD5Q86YS7 1000 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 PANK3Q9H999 370 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 TMOD3Q9NYL9 352 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 CLEC11AQ9Y240 323 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 TLL2Q9Y6L7 1015 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 ZNF541Q9H0D2 1346 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 ADAMTS7Q9UKP4 1686 aa10.98□□□□□ -0.65
CD44-205ENST00000352818 AMPHP49418 695 aa10.97□□□□□ -0.65
CD44-205ENST00000352818 PNISRQ8TF01 805 aaKnown RBP10.97□□□□□ -0.65
CD44-205ENST00000352818 SMG6Q86US8 1419 aaKnown RBP10.97□□□□□ -0.65
CD44-205ENST00000352818 DLEC1Q9Y238 1755 aa10.97□□□□□ -0.65
CD44-205ENST00000352818 DICER1Q9UPY3 1922 aaKnown RBP10.96□□□□□ -0.65
CD44-205ENST00000352818 SCN4AP35499 1836 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 COL5A3P25940 1745 aaPredicted RBP10.96□□□□□ -0.65
CD44-205ENST00000352818 EDC4Q6P2E9 1401 aaKnown RBP10.96□□□□□ -0.65
CD44-205ENST00000352818 TRAF5O00463 557 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 BRPF1P55201 1214 aaPredicted RBP10.96□□□□□ -0.65
CD44-205ENST00000352818 NFIXQ14938 502 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 CIAPIN1Q6FI81 312 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 FAM9BQ8IZU0 186 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 NBPF15Q8N660 670 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 HACL1Q9UJ83 578 aa10.96□□□□□ -0.65
CD44-205ENST00000352818 SUPT16HQ9Y5B9 1047 aaKnown RBP10.96□□□□□ -0.65
CD44-205ENST00000352818 RRS1Q15050 365 aaKnown RBP10.95□□□□□ -0.66
CD44-205ENST00000352818 TMC1Q8TDI8 760 aa10.95□□□□□ -0.66
CD44-205ENST00000352818 TAOK3Q9H2K8 898 aa10.95□□□□□ -0.66
CD44-205ENST00000352818 FER1L6Q2WGJ9 1857 aa10.95□□□□□ -0.66
CD44-205ENST00000352818 RANBP2P49792 3224 aaKnown RBP10.95□□□□□ -0.66
CD44-205ENST00000352818 NRXN2Q9P2S2 1712 aa10.95□□□□□ -0.66
CD44-205ENST00000352818 BRCA2P51587 3418 aa10.94□□□□□ -0.66
CD44-205ENST00000352818 RNF123Q5XPI4 1314 aa10.94□□□□□ -0.66
CD44-205ENST00000352818 AMER1Q5JTC6 1135 aaPredicted RBP10.94□□□□□ -0.66
CD44-205ENST00000352818 SLC12A5Q9H2X9 1139 aa10.94□□□□□ -0.66
CD44-205ENST00000352818 BCL2L12Q9HB09 334 aa10.94□□□□□ -0.66
CD44-205ENST00000352818 RTL1A6NKG5 1358 aa10.93□□□□□ -0.66
CD44-205ENST00000352818 ZNF831Q5JPB2 1677 aa10.93□□□□□ -0.66
CD44-205ENST00000352818 CRKLP46109 303 aaKnown RBP10.93□□□□□ -0.66
CD44-205ENST00000352818 INTS5Q6P9B9 1019 aaKnown RBP10.93□□□□□ -0.66
CD44-205ENST00000352818 SAPCD2Q86UD0 394 aa10.93□□□□□ -0.66
CD44-205ENST00000352818 RBM42Q9BTD8 480 aaKnown RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms