RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 GADL1Q6ZQY3 521 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 CLASRPQ8N2M8 674 aaKnown RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 ERICH3Q5RHP9 1530 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 PLCG2P16885 1265 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 HUNKP57058 714 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 SF3A1Q15459 793 aaKnown RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 RETREG2Q8NC44 543 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 TRIM44Q96DX7 344 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 PALM3A6NDB9 673 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 ATP5J2-PTCD1G3V325 749 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 OSBPP22059 807 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 PRKAR2BP31323 418 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 AXDND1Q5T1B0 1012 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 MIER1Q8N108 512 aa10.09□□□□□ -0.79
HMGB1-203ENST00000341423 CCDC97Q96F63 343 aaPredicted RBP10.09□□□□□ -0.79
HMGB1-203ENST00000341423 KDM4FA0A1W2PPD8 638 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 DCAF5Q96JK2 942 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 HRCP23327 699 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 RDXP35241 583 aaKnown RBP10.08□□□□□ -0.8
HMGB1-203ENST00000341423 MKRN3Q13064 507 aaKnown RBP10.08□□□□□ -0.8
HMGB1-203ENST00000341423 CREBRFQ8IUR6 639 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 MICAL1Q8TDZ2 1067 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 CDK5RAP3Q96JB5 506 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 CUX1P39880 1505 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 GNAI3P08754 354 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 DPP9Q86TI2 863 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 PNMA3Q9UL41 463 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 TPM2P07951 284 aa10.08□□□□□ -0.8
HMGB1-203ENST00000341423 IDH1O75874 414 aaKnown RBP10.07□□□□□ -0.8
HMGB1-203ENST00000341423 RNF20Q5VTR2 975 aa10.07□□□□□ -0.8
HMGB1-203ENST00000341423 CCDC146Q8IYE0 955 aa10.07□□□□□ -0.8
HMGB1-203ENST00000341423 TFRCP02786 760 aaKnown RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 CT47A1Q5JQC4 288 aaPredicted RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 FGD6Q6ZV73 1430 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 ZKSCAN1P17029 563 aaPredicted RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 LDHAL6AQ6ZMR3 332 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 CKAP2LQ8IYA6 745 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 FERMT2Q96AC1 680 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 KIF14Q15058 1648 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 SRCIN1Q9C0H9 1055 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 SLC12A5Q9H2X9 1139 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 NR1I2O75469 434 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 TNNT3P45378 269 aaPredicted RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 MAP3K12Q12852 859 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 CTCFP49711 727 aaPredicted RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 EZH2Q15910 746 aaKnown RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 DHX37Q8IY37 1157 aaKnown RBP10.06□□□□□ -0.8
HMGB1-203ENST00000341423 FAM184AQ8NB25 1140 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 RILPL2Q969X0 211 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 PAGR1Q9BTK6 254 aa10.06□□□□□ -0.8
HMGB1-203ENST00000341423 ANP32AP39687 249 aaKnown RBP10.05□□□□□ -0.8
HMGB1-203ENST00000341423 RAD50Q92878 1312 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 FKBP4Q02790 459 aaKnown RBP eCLIP10.05□□□□□ -0.87e-6■■■■□ 25.4
HMGB1-203ENST00000341423 KRT26Q7Z3Y9 468 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 AP5M1Q9H0R1 490 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 BRINP3Q76B58 766 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 SPINK5Q9NQ38 1064 aaPredicted RBP10.05□□□□□ -0.8
HMGB1-203ENST00000341423 SEC63Q9UGP8 760 aaKnown RBP10.05□□□□□ -0.8
HMGB1-203ENST00000341423 CNPY2Q9Y2B0 182 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 TTC21BQ7Z4L5 1316 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 KDM5BQ9UGL1 1544 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 PICALMQ13492 652 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 VPS72Q15906 364 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 APBB1IPQ7Z5R6 666 aaPredicted RBP10.05□□□□□ -0.8
HMGB1-203ENST00000341423 TRIM22Q8IYM9 498 aa10.05□□□□□ -0.8
HMGB1-203ENST00000341423 TAF7Q15545 349 aaPredicted RBP10.04□□□□□ -0.8
HMGB1-203ENST00000341423 CWC25Q9NXE8 425 aaPredicted RBP10.04□□□□□ -0.8
HMGB1-203ENST00000341423 FAM50BQ9Y247 325 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 CASKIN1Q8WXD9 1431 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 TLR3O15455 904 aaKnown RBP10.04□□□□□ -0.8
HMGB1-203ENST00000341423 C9orf131Q5VYM1 1079 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 PPM1EQ8WY54 764 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 TMEM2Q9UHN6 1383 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 KIF4AO95239 1232 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 NME9Q86XW9 330 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 HECW1Q76N89 1606 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 PES1O00541 588 aaKnown RBP10.04□□□□□ -0.8
HMGB1-203ENST00000341423 NOM1Q5C9Z4 860 aaKnown RBP10.04□□□□□ -0.8
HMGB1-203ENST00000341423 ZFYVE28Q9HCC9 887 aa10.04□□□□□ -0.8
HMGB1-203ENST00000341423 HSPA5P11021 654 aaKnown RBP10.03□□□□□ -0.8
HMGB1-203ENST00000341423 BECN1Q14457 450 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 UBAC1Q9BSL1 405 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 FTOQ9C0B1 505 aaKnown RBP eCLIP10.03□□□□□ -0.8
HMGB1-203ENST00000341423 NOC2LQ9Y3T9 749 aaKnown RBP10.03□□□□□ -0.8
HMGB1-203ENST00000341423 TRPM2O94759 1503 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 ARAP1Q96P48 1450 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 DEFB115Q30KQ5 88 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 TMC4Q7Z404 712 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 ALDH1A1P00352 501 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 TPD52L1Q16890 204 aaPredicted RBP10.03□□□□□ -0.8
HMGB1-203ENST00000341423 HYPKQ9NX55 129 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 MAGI2Q86UL8 1455 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 ZNF428Q96B54 188 aa10.03□□□□□ -0.8
HMGB1-203ENST00000341423 RWDD1Q9H446 243 aaPredicted RBP10.03□□□□□ -0.8
HMGB1-203ENST00000341423 CELF2O95319 508 aaKnown RBP10.02□□□□□ -0.8
HMGB1-203ENST00000341423 SERPINB2P05120 415 aa10.02□□□□□ -0.8
HMGB1-203ENST00000341423 DGKZQ13574 1117 aa10.02□□□□□ -0.8
HMGB1-203ENST00000341423 CCDC102AQ96A19 550 aa10.02□□□□□ -0.8
HMGB1-203ENST00000341423 KIF16BQ96L93 1317 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms