RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 ARHGAP31Q2M1Z3 1444 aa9.46□□□□□ -0.89
VMA21-201ENST00000330374 MAP2P11137 1827 aaKnown RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 CHAF1AQ13111 956 aaPredicted RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 FERMT3Q86UX7 667 aa9.46□□□□□ -0.89
VMA21-201ENST00000330374 LRRFIP2Q9Y608 721 aaKnown RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 POGZQ7Z3K3 1410 aa9.46□□□□□ -0.89
VMA21-201ENST00000330374 ZSCAN20P17040 1043 aaPredicted RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 DNM1Q05193 864 aaKnown RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 EIF4A2Q14240 407 aaKnown RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 HSP90AB2PQ58FF8 381 aa9.46□□□□□ -0.89
VMA21-201ENST00000330374 CCDC83Q8IWF9 413 aa9.46□□□□□ -0.89
VMA21-201ENST00000330374 RTF1Q92541 710 aaKnown RBP9.46□□□□□ -0.89
VMA21-201ENST00000330374 AP5Z1O43299 807 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 CWC27Q6UX04 472 aaKnown RBP9.46□□□□□ -0.9
VMA21-201ENST00000330374 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.46□□□□□ -0.9
VMA21-201ENST00000330374 PRIMPOLQ96LW4 560 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 STK31Q9BXU1 1019 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 ASXL2Q76L83 1435 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 CHL1O00533 1208 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 KDM4AO75164 1064 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 SYT1P21579 422 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 FAM173BQ6P4H8 233 aa9.46□□□□□ -0.9
VMA21-201ENST00000330374 STX6O43752 255 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 AK2P54819 239 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 FAM184AQ8NB25 1140 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 INTS4Q96HW7 963 aaKnown RBP9.45□□□□□ -0.9
VMA21-201ENST00000330374 RGS12O14924 1447 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 ZSCAN22P10073 491 aaPredicted RBP9.45□□□□□ -0.9
VMA21-201ENST00000330374 DMTNQ08495 405 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 PTPRMP28827 1452 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 CCDC82Q8N4S0 544 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 PTPRCP08575 1304 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 NEXMIFQ5QGS0 1516 aa9.45□□□□□ -0.9
VMA21-201ENST00000330374 SURF6O75683 361 aaKnown RBP9.44□□□□□ -0.9
VMA21-201ENST00000330374 MLECQ14165 292 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 CKAP2LQ8IYA6 745 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 RASEFQ8IZ41 740 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 LARGE1O95461 756 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 CASTP20810 708 aaKnown RBP9.44□□□□□ -0.9
VMA21-201ENST00000330374 PTGS1P23219 599 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 ZC3H15Q8WU90 426 aaKnown RBP9.44□□□□□ -0.9
VMA21-201ENST00000330374 NUDT16Q96DE0 195 aaKnown RBP9.44□□□□□ -0.9
VMA21-201ENST00000330374 C16orf45Q96MC5 204 aaPredicted RBP9.44□□□□□ -0.9
VMA21-201ENST00000330374 CCT4P50991 539 aaKnown RBP9.44□□□□□ -0.9
VMA21-201ENST00000330374 NECAB1Q8N987 351 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 KCNV2Q8TDN2 545 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 ZNF592Q92610 1267 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 KCNF1Q9H3M0 494 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 UHRF1BP1LA0JNW5 1464 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 UBE2HP62256 183 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 OSBPL3Q9H4L5 887 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 SLC52A1Q9NWF4 448 aa9.44□□□□□ -0.9
VMA21-201ENST00000330374 UVSSAQ2YD98 709 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 CLEC11AQ9Y240 323 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 ABCA9Q8IUA7 1624 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 LRMPQ12912 555 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 NAA30Q147X3 362 aaPredicted RBP9.43□□□□□ -0.9
VMA21-201ENST00000330374 F13A1P00488 732 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 GJB2P29033 226 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 OS9Q13438 667 aaPredicted RBP9.43□□□□□ -0.9
VMA21-201ENST00000330374 LUZP1Q86V48 1076 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 KIF24Q5T7B8 1368 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 RPAP1Q9BWH6 1393 aaPredicted RBP9.43□□□□□ -0.9
VMA21-201ENST00000330374 LMTK2Q8IWU2 1503 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 RUFY3Q7L099 469 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 TCEANC2Q96MN5 208 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 SNX14Q9Y5W7 946 aa9.43□□□□□ -0.9
VMA21-201ENST00000330374 ANAPC15P60006 121 aa9.42□□□□□ -0.9
VMA21-201ENST00000330374 FLIIQ13045 1269 aa9.42□□□□□ -0.9
VMA21-201ENST00000330374 WASLO00401 505 aaPredicted RBP9.42□□□□□ -0.9
VMA21-201ENST00000330374 ARAP3Q8WWN8 1544 aa9.42□□□□□ -0.9
VMA21-201ENST00000330374 KCNJ4P48050 445 aa9.42□□□□□ -0.9
VMA21-201ENST00000330374 DLG5Q8TDM6 1919 aa9.42□□□□□ -0.9
VMA21-201ENST00000330374 REREQ9P2R6 1566 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 UBTFL1P0CB47 393 aaPredicted RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 ZNF771Q7L3S4 317 aaPredicted RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 KIAA1524Q8TCG1 905 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 JAKMIP1Q96N16 626 aaKnown RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 DIAPH3Q9NSV4 1193 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 TFIP11Q9UBB9 837 aaKnown RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 NRBP1Q9UHY1 535 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 LIMCH1Q9UPQ0 1083 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 EIF2S2P20042 333 aaKnown RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 HSPA4P34932 840 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 MTHFSDQ2M296 383 aaKnown RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 CCDC186Q7Z3E2 898 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 SIGLEC1Q9BZZ2 1709 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 GNAI3P08754 354 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 ATP8B2P98198 1209 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 PRPF40BQ6NWY9 871 aaKnown RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 GOLGA6L4A6NEF3 574 aa9.41□□□□□ -0.9
VMA21-201ENST00000330374 LTV1Q96GA3 475 aaPredicted RBP9.41□□□□□ -0.9
VMA21-201ENST00000330374 GPIHBP1Q8IV16 184 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 TRIM5Q9C035 493 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.4□□□□□ -0.9
VMA21-201ENST00000330374 V9GYY5 206 aaPredicted RBP9.4□□□□□ -0.9
VMA21-201ENST00000330374 GOLGA6L6A8MZA4 724 aa9.4□□□□□ -0.9
VMA21-201ENST00000330374 LETM1O95202 739 aaPredicted RBP9.4□□□□□ -0.9
VMA21-201ENST00000330374 CCDC192P0DO97 292 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms