RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 TBC1D9Q6ZT07 1266 aa11.23□□□□□ -0.61
TMEM39A-201ENST00000319172 LAMC1P11047 1609 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 EIF4A1P60842 406 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 BMP2KLQ5H9B9 411 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 MROH2AA6NES4 1674 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 GLRX3O76003 335 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 FAM184AQ8NB25 1140 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 PCDH11XQ9BZA7 1347 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 PCDH11YQ9BZA8 1340 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 ATP8B2P98198 1209 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 LINS1Q8NG48 757 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 RHPN1Q8TCX5 695 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 SLC52A2Q9HAB3 445 aa11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 DDX21Q9NR30 783 aaKnown RBP eCLIP11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 CWC25Q9NXE8 425 aaPredicted RBP11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 DDX49Q9Y6V7 483 aaKnown RBP11.22□□□□□ -0.61
TMEM39A-201ENST00000319172 C8orf34Q49A92 452 aa11.21□□□□□ -0.61
TMEM39A-201ENST00000319172 FBXW7Q969H0 707 aa11.21□□□□□ -0.61
TMEM39A-201ENST00000319172 DCTPP1Q9H773 170 aa11.21□□□□□ -0.61
TMEM39A-201ENST00000319172 KDM2BQ8NHM5 1336 aa11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 FOSBP53539 338 aa11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 METTL24Q5JXM2 366 aa11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 UPF3BQ9BZI7 483 aaKnown RBP11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 CDK12Q9NYV4 1490 aaPredicted RBP11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 VPS37CA5D8V6 355 aaPredicted RBP11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 UBE2Q2Q8WVN8 375 aa11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 TEX13AQ9BXU3 409 aaPredicted RBP11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 AXIN2Q9Y2T1 843 aa11.21□□□□□ -0.62
TMEM39A-201ENST00000319172 ZC3H13Q5T200 1668 aaKnown RBP11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 H3BQV1 296 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 TRDNQ13061 729 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 BRINP3Q76B58 766 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 TBC1D2BQ9UPU7 963 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 ALDH1L1O75891 902 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 IFIT5Q13325 482 aaKnown RBP11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 TTC22Q5TAA0 569 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 SMC3Q9UQE7 1217 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 DDX11L8A8MPP1 907 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 HIP1O00291 1037 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 SEC24BO95487 1268 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 A1BGP04217 495 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 CPSF1Q10570 1443 aaKnown RBP11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 MCTP1Q6DN14 999 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 LMBR1LQ6UX01 489 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 OTUD7AQ8TE49 926 aaPredicted RBP11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 PTPRUQ92729 1446 aa11.2□□□□□ -0.62
TMEM39A-201ENST00000319172 ERBB3P21860 1342 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 SETD1BQ9UPS6 1966 aaKnown RBP11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 ANKARQ7Z5J8 1434 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 ADGRL3Q9HAR2 1447 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 SDSP20132 328 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 PHKG2P15735 406 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 ATP6V1AP38606 617 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 PDE1AP54750 535 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 PODXL2Q9NZ53 605 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 RICTORQ6R327 1708 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 NBPF7P0C2Y1 421 aaPredicted RBP11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 RALYLQ86SE5 291 aaKnown RBP11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 BABAM1Q9NWV8 329 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 IQGAP1P46940 1657 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 ECHDC1Q9NTX5 307 aa11.19□□□□□ -0.62
TMEM39A-201ENST00000319172 SPATA31D1Q6ZQQ2 1576 aa11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 ZNF853P0CG23 659 aa11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 USP16Q9Y5T5 823 aa11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 GIGYF1O75420 1035 aaPredicted RBP11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 TMEM131LA2VDJ0 1609 aa11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 CPLX1O14810 134 aa11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 L1TD1Q5T7N2 865 aaKnown RBP11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 STK11IPQ8N1F8 1099 aa11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.18□□□□□ -0.62
TMEM39A-201ENST00000319172 K7ELQ4 463 aaPredicted RBP11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 PTMSP20962 102 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 SNRKQ9NRH2 765 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 KIF3AQ9Y496 699 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 PNPLA6Q8IY17 1366 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 PNMA6EA0A0J9YXQ4 647 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 PRAMEF22A3QJZ6 481 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 ZPR1O75312 459 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 IDH1O75874 414 aaKnown RBP11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 HSP90AB3PQ58FF7 597 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 LDHAL6AQ6ZMR3 332 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 GOLGA6L3A6NEY3 463 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 HOXB7P09629 217 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 PRIM1P49642 420 aaKnown RBP11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 NUCB2P80303 420 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 ZNF652Q9Y2D9 606 aa11.17□□□□□ -0.62
TMEM39A-201ENST00000319172 PSMA5P28066 241 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 IGHMBP2P38935 993 aaKnown RBP11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 TBC1D2Q9BYX2 928 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 CPS1P31327 1500 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 NFXL1Q6ZNB6 911 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 PLEKHM2Q8IWE5 1019 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 KLHDC4Q8TBB5 520 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 JAKMIP1Q96N16 626 aaKnown RBP11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 KDM4AO75164 1064 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 PHF14O94880 888 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 IFIT1P09914 478 aaKnown RBP11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 DNAJC10Q8IXB1 793 aa11.16□□□□□ -0.62
TMEM39A-201ENST00000319172 TBC1D32Q96NH3 1257 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms