RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 PPRC1Q5VV67 1664 aaKnown RBP10.94□□□□□ -0.66
PDGFC-201ENST00000274071 ST18O60284 1047 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 RPAINQ86UA6 219 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 COL17A1Q9UMD9 1497 aaPredicted RBP10.93□□□□□ -0.66
PDGFC-201ENST00000274071 RIMBP3CA6NJZ7 1639 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 RIMBP3BA6NNM3 1639 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 BIRC2Q13490 618 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 LMTK2Q8IWU2 1503 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 PPM1EQ8WY54 764 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 RIMBP3Q9UFD9 1639 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 ABCA6Q8N139 1617 aa10.93□□□□□ -0.66
PDGFC-201ENST00000274071 ACTN2P35609 894 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 TMF1P82094 1093 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 MMS22LQ6ZRQ5 1243 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 USP27XA6NNY8 438 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 NEUROD2Q15784 382 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 GIMAP6Q6P9H5 292 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 NYAP1Q6ZVC0 841 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 BORCS6Q96GS4 357 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 CALR3Q96L12 384 aaKnown RBP10.92□□□□□ -0.66
PDGFC-201ENST00000274071 CFAP44Q96MT7 982 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 MAP3K4Q9Y6R4 1608 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 CCDC196A0A1B0GTZ2 297 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 PTPN14Q15678 1187 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 TPRNQ4KMQ1 711 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 ITPRIPQ8IWB1 547 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 DDX19BQ9UMR2 479 aa10.92□□□□□ -0.66
PDGFC-201ENST00000274071 KIF1BO60333 1816 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 CDC45O75419 566 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 OAS2P29728 719 aaKnown RBP10.91□□□□□ -0.66
PDGFC-201ENST00000274071 FAM69CQ0P6D2 419 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 MAP9Q49MG5 647 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 CACTINQ8WUQ7 758 aaKnown RBP10.91□□□□□ -0.66
PDGFC-201ENST00000274071 RBM28Q9NW13 759 aaKnown RBP10.91□□□□□ -0.66
PDGFC-201ENST00000274071 LMAN1P49257 510 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 TRDNQ13061 729 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 ANKRD45Q5TZF3 282 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 AK7Q96M32 723 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 ADAM21Q9UKJ8 722 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 PIK3C2GO75747 1445 aa10.91□□□□□ -0.66
PDGFC-201ENST00000274071 NEURL4Q96JN8 1562 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 TRIM27P14373 513 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 LRRN4CLQ8ND94 238 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 ZBTB40Q9NUA8 1239 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 PSD3Q9NYI0 1048 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 NPATQ14207 1427 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 CHGAP10645 457 aaKnown RBP10.9□□□□□ -0.66
PDGFC-201ENST00000274071 C11orf91Q3C1V1 193 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 TMCO3Q6UWJ1 677 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 DRC7Q8IY82 874 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 EXOC4Q96A65 974 aa10.9□□□□□ -0.66
PDGFC-201ENST00000274071 ADGRF5Q8IZF2 1346 aa10.9□□□□□ -0.67
PDGFC-201ENST00000274071 FOXR1Q6PIV2 292 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 RICTORQ6R327 1708 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 GLI2P10070 1586 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 IVLP07476 585 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 CORO7P57737 925 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 OS9Q13438 667 aaPredicted RBP10.89□□□□□ -0.67
PDGFC-201ENST00000274071 ARHGAP29Q52LW3 1261 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 NBPF10Q6P3W6 841 aaKnown RBP10.89□□□□□ -0.67
PDGFC-201ENST00000274071 ZSCAN16Q9H4T2 348 aaPredicted RBP10.89□□□□□ -0.67
PDGFC-201ENST00000274071 ANKRD65E5RJM6 399 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 SASH3O75995 380 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 SMC1AQ14683 1233 aaKnown RBP10.89□□□□□ -0.67
PDGFC-201ENST00000274071 NBPF9Q3BBW0 867 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 CFAP70Q5T0N1 1121 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 JMYQ8N9B5 988 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 TMX3Q96JJ7 454 aa10.89□□□□□ -0.67
PDGFC-201ENST00000274071 RRP7AQ9Y3A4 280 aaKnown RBP10.89□□□□□ -0.67
PDGFC-201ENST00000274071 SCAF11Q99590 1463 aaKnown RBP10.88□□□□□ -0.67
PDGFC-201ENST00000274071 SCP2P22307 547 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 INHBEP58166 350 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 NBPF11Q86T75 865 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 DIP2CQ9Y2E4 1556 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 IQGAP1P46940 1657 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 CCDC171Q6TFL3 1326 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 CPP00450 1065 aa10.88□□□□□ -0.67
PDGFC-201ENST00000274071 ZBTB12Q9Y330 459 aaPredicted RBP10.88□□□□□ -0.67
PDGFC-201ENST00000274071 ABCC3O15438 1527 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 KLHL33A6NCF5 533 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 SEC31AO94979 1220 aaKnown RBP10.87□□□□□ -0.67
PDGFC-201ENST00000274071 ZNF428Q96B54 188 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 YEATS2Q9ULM3 1422 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 CASTP20810 708 aaKnown RBP10.87□□□□□ -0.67
PDGFC-201ENST00000274071 CWC27Q6UX04 472 aaKnown RBP10.87□□□□□ -0.67
PDGFC-201ENST00000274071 LEKR1Q6ZMV7 388 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 TMEM87AQ8NBN3 555 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 L2HGDHQ9H9P8 463 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 PDRG1Q9NUG6 133 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 MYOM2P54296 1465 aa10.87□□□□□ -0.67
PDGFC-201ENST00000274071 ATP8B1O43520 1251 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 GSPT1P15170 499 aaKnown RBP10.86□□□□□ -0.67
PDGFC-201ENST00000274071 CCDC144BQ3MJ40 725 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 CCDC144CPQ8IYA2 1237 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 DNAAF4Q8WXU2 420 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 MROH2AA6NES4 1674 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 KIAA1210Q9ULL0 1709 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 AATKQ6ZMQ8 1374 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 KIF3CO14782 793 aa10.86□□□□□ -0.67
PDGFC-201ENST00000274071 CLSTN1O94985 981 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms