RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 TTLL5Q6EMB2 1281 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 SPATA32Q96LK8 384 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 HSP90B2PQ58FF3 399 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 LRP2BPQ9P2M1 347 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 CFAP74Q9C0B2 1584 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 SPHKAPQ2M3C7 1700 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 CDKL5O76039 1030 aa13.58□□□□□ -0.23
NOD1-201ENST00000222823 CASTP20810 708 aaKnown RBP13.58□□□□□ -0.23
NOD1-201ENST00000222823 CEBPAP49715 358 aaPredicted RBP13.58□□□□□ -0.23
NOD1-201ENST00000222823 SMC5Q8IY18 1101 aa13.58□□□□□ -0.23
NOD1-201ENST00000222823 UBAC1Q9BSL1 405 aa13.58□□□□□ -0.23
NOD1-201ENST00000222823 NEO1Q92859 1461 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 MPRIPQ6WCQ1 1025 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 CCAR1Q8IX12 1150 aaKnown RBP13.58□□□□□ -0.24
NOD1-201ENST00000222823 MPNDQ8N594 471 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 RUFY1Q96T51 708 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 SERPINC1P01008 464 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 HMGN5P82970 282 aaKnown RBP13.58□□□□□ -0.24
NOD1-201ENST00000222823 DNAAF4Q8WXU2 420 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 BOLA2Q9H3K6 86 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 ACBD3Q9H3P7 528 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 RAI14Q9P0K7 980 aa13.58□□□□□ -0.24
NOD1-201ENST00000222823 RIMS2Q9UQ26 1411 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 MAP3K4Q9Y6R4 1608 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 SMARCE1Q969G3 411 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 ZBTB40Q9NUA8 1239 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 MAGEC2Q9UBF1 373 aaPredicted RBP13.57□□□□□ -0.24
NOD1-201ENST00000222823 DBF4Q9UBU7 674 aaPredicted RBP13.57□□□□□ -0.24
NOD1-201ENST00000222823 IGHMBP2P38935 993 aaKnown RBP13.57□□□□□ -0.24
NOD1-201ENST00000222823 METTL24Q5JXM2 366 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 ABCF2Q9UG63 623 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 MLH3Q9UHC1 1453 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 FBLN1P23142 703 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 FERMT3Q86UX7 667 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 EFCAB6Q5THR3 1501 aa13.57□□□□□ -0.24
NOD1-201ENST00000222823 SEC24BO95487 1268 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 DDX11Q96FC9 970 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 KRT18P05783 430 aaKnown RBP13.56□□□□□ -0.24
NOD1-201ENST00000222823 FLIIQ13045 1269 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 IMMTQ16891 758 aaKnown RBP13.56□□□□□ -0.24
NOD1-201ENST00000222823 PPIP5K1Q6PFW1 1433 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 MYD88Q99836 296 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 LRRFIP2Q9Y608 721 aaKnown RBP13.56□□□□□ -0.24
NOD1-201ENST00000222823 ODF2Q5BJF6 829 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 AIDAQ96BJ3 306 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 TRIM35Q9UPQ4 493 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 U3KPZ7 1027 aaPredicted RBP13.56□□□□□ -0.24
NOD1-201ENST00000222823 PTPRCP08575 1304 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 PRPF40BQ6NWY9 871 aaKnown RBP13.56□□□□□ -0.24
NOD1-201ENST00000222823 MRPL50Q8N5N7 158 aaKnown RBP13.56□□□□□ -0.24
NOD1-201ENST00000222823 NUP62CLQ9H1M0 184 aa13.56□□□□□ -0.24
NOD1-201ENST00000222823 TTC21BQ7Z4L5 1316 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 AKAP2Q9Y2D5 859 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 SOGA3Q5TF21 947 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 BICDL1Q6ZP65 573 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 TMOD3Q9NYL9 352 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 NOL7Q9UMY1 257 aaKnown RBP13.55□□□□□ -0.24
NOD1-201ENST00000222823 E9PCH4 1651 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 CCP110O43303 1012 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 CAGE1Q8TC20 777 aa13.55□□□□□ -0.24
NOD1-201ENST00000222823 VAMP4O75379 141 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 MTERF4Q7Z6M4 381 aaKnown RBP13.54□□□□□ -0.24
NOD1-201ENST00000222823 CDR1P51861 262 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 CCDC83Q8IWF9 413 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 CCDC8Q9H0W5 538 aaPredicted RBP13.54□□□□□ -0.24
NOD1-201ENST00000222823 ZMYM3Q14202 1370 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 IFIT1P09914 478 aaKnown RBP13.54□□□□□ -0.24
NOD1-201ENST00000222823 ZFYVE27Q5T4F4 411 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 CEP57L1Q8IYX8 460 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 AK7Q96M32 723 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 MAP7D2Q96T17 732 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 DACH1Q9UI36 760 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 STIM1Q13586 685 aa13.54□□□□□ -0.24
NOD1-201ENST00000222823 FAM83GA6ND36 823 aa13.53□□□□□ -0.24
NOD1-201ENST00000222823 SETQ01105 290 aaPredicted RBP13.53□□□□□ -0.24
NOD1-201ENST00000222823 DHX8Q14562 1220 aaKnown RBP13.53□□□□□ -0.24
NOD1-201ENST00000222823 TBC1D9Q6ZT07 1266 aa13.53□□□□□ -0.24
NOD1-201ENST00000222823 ZNHIT6Q9NWK9 470 aaKnown RBP13.53□□□□□ -0.24
NOD1-201ENST00000222823 PHF23Q9BUL5 403 aaPredicted RBP13.53□□□□□ -0.24
NOD1-201ENST00000222823 HYPKQ9NX55 129 aa13.53□□□□□ -0.24
NOD1-201ENST00000222823 A0A087WZG4 1122 aa13.53□□□□□ -0.24
NOD1-201ENST00000222823 PPFIBP1Q86W92 1011 aa13.52□□□□□ -0.24
NOD1-201ENST00000222823 PHACTR3Q96KR7 559 aa13.52□□□□□ -0.24
NOD1-201ENST00000222823 PIP4K2BP78356 416 aa13.52□□□□□ -0.25
NOD1-201ENST00000222823 IFIT5Q13325 482 aaKnown RBP13.52□□□□□ -0.25
NOD1-201ENST00000222823 FILIP1Q7Z7B0 1213 aa13.52□□□□□ -0.25
NOD1-201ENST00000222823 ACEP12821 1306 aa13.52□□□□□ -0.25
NOD1-201ENST00000222823 ZHX3Q9H4I2 956 aa13.51□□□□□ -0.25
NOD1-201ENST00000222823 ESPNB1AK53 854 aa13.51□□□□□ -0.25
NOD1-201ENST00000222823 WASF1Q92558 559 aa13.51□□□□□ -0.25
NOD1-201ENST00000222823 TNRQ92752 1358 aa13.51□□□□□ -0.25
NOD1-201ENST00000222823 C8orf58Q8NAV2 365 aa13.51□□□□□ -0.25
NOD1-201ENST00000222823 ZNF652Q9Y2D9 606 aa13.51□□□□□ -0.25
NOD1-201ENST00000222823 RBM5P52756 815 aaKnown RBP eCLIP13.51□□□□□ -0.25
NOD1-201ENST00000222823 ZSCAN29Q8IWY8 852 aaPredicted RBP13.51□□□□□ -0.25
NOD1-201ENST00000222823 SH2B1Q9NRF2 756 aaPredicted RBP13.51□□□□□ -0.25
NOD1-201ENST00000222823 CLASP1Q7Z460 1538 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 RNF17Q9BXT8 1623 aaKnown RBP13.5□□□□□ -0.25
NOD1-201ENST00000222823 SYCE3A1L190 88 aa13.5□□□□□ -0.25
NOD1-201ENST00000222823 MAP3K11Q16584 847 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms