RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	PRY1	P47032	299 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	SPO20	Q04359	397 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	NSE3	Q05541	303 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	YDL121C	Q07541	149 aa		3.94	□□□□□ -1.78
LCB4	YOR171C	SBP1	P10080	294 aa	Known RBP	3.93	□□□□□ -1.78
LCB4	YOR171C	YCK2	P23292	546 aa	Known RBP	3.93	□□□□□ -1.78
LCB4	YOR171C	PUF4	P25339	888 aa	Known RBP RIP-Chip data	3.93	□□□□□ -1.78	not detected
LCB4	YOR171C	RRP14	P36080	434 aa	Known RBP	3.93	□□□□□ -1.78
LCB4	YOR171C	GPT2	P36148	743 aa		3.93	□□□□□ -1.78
LCB4	YOR171C	ERP2	P39704	215 aa		3.93	□□□□□ -1.78
LCB4	YOR171C	MSH4	P40965	878 aa	Predicted RBP	3.93	□□□□□ -1.78
LCB4	YOR171C	RSA3	Q05942	220 aa	Known RBP	3.93	□□□□□ -1.78
LCB4	YOR171C	PTC5	Q12511	572 aa		3.93	□□□□□ -1.78
LCB4	YOR171C	RAD4	P14736	754 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	DAL5	P15365	543 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	SBA1	P28707	216 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	MCM7	P38132	845 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	SLN1	P39928	1220 aa	Predicted RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	NAN1	Q02931	896 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	BDF2	Q07442	638 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	LAP2	Q10740	671 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	MLS1	P30952	554 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	SRP40	P32583	406 aa	Predicted RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	PPG1	P32838	368 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	SMY2	P32909	740 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	DEF1	P35732	738 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	VBA5	P36172	582 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	RGD1	P38339	666 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	QNS1	P38795	714 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	NMD3	P38861	518 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	VPS53	P47061	822 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	HNT2	P49775	206 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	HUL5	P53119	910 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	YLR257W	Q06146	321 aa	Known RBP	3.92	□□□□□ -1.78
LCB4	YOR171C	YOL057W	Q08225	711 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	RKM4	Q12504	494 aa		3.92	□□□□□ -1.78
LCB4	YOR171C	RET1	P22276	1149 aa	Known RBP	3.91	□□□□□ -1.78
LCB4	YOR171C	RSC6	P25632	483 aa		3.91	□□□□□ -1.78
LCB4	YOR171C	NNK1	P36003	928 aa		3.91	□□□□□ -1.78
LCB4	YOR171C	YBR184W	P38299	523 aa		3.91	□□□□□ -1.78
LCB4	YOR171C	HSE1	P38753	452 aa		3.91	□□□□□ -1.78
LCB4	YOR171C	FPR3	P38911	411 aa	Known RBP	3.91	□□□□□ -1.78
LCB4	YOR171C	NOC2	P39744	710 aa	Known RBP	3.91	□□□□□ -1.78
LCB4	YOR171C	ARI1	P53111	347 aa	Known RBP	3.91	□□□□□ -1.78
LCB4	YOR171C	SHE9	Q04172	456 aa		3.91	□□□□□ -1.78
LCB4	YOR171C	TMA64	Q04600	565 aa	Known RBP	3.91	□□□□□ -1.78
LCB4	YOR171C	SSB1	P11484	613 aa	Known RBP	3.9	□□□□□ -1.78
LCB4	YOR171C	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.9	□□□□□ -1.78	not detected
LCB4	YOR171C	YKL091C	P33324	310 aa	Known RBP	3.9	□□□□□ -1.78
LCB4	YOR171C	YKL107W	P34251	309 aa		3.9	□□□□□ -1.78
LCB4	YOR171C	YHR020W	P38708	688 aa	Known RBP	3.9	□□□□□ -1.78
LCB4	YOR171C	SSB2	P40150	613 aa	Known RBP	3.9	□□□□□ -1.78
LCB4	YOR171C	YGL176C	P46945	554 aa		3.9	□□□□□ -1.78
LCB4	YOR171C	ALT1	P52893	592 aa		3.9	□□□□□ -1.78
LCB4	YOR171C	YMR187C	Q03236	431 aa		3.9	□□□□□ -1.78
LCB4	YOR171C	ECM16	Q04217	1267 aa	Known RBP	3.9	□□□□□ -1.78
LCB4	YOR171C	CDC53	Q12018	815 aa	Known RBP	3.9	□□□□□ -1.78
LCB4	YOR171C	YPR053C	Q6Q5F3	151 aa		3.9	□□□□□ -1.78
LCB4	YOR171C	CIT2	P08679	460 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	NFS1	P25374	497 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	MFT1	P33441	392 aa	Known RBP	3.9	□□□□□ -1.79
LCB4	YOR171C	MRP8	P35719	219 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	MBP1	P39678	833 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	VPS27	P40343	622 aa	Known RBP	3.9	□□□□□ -1.79
LCB4	YOR171C	HOS4	P40480	1083 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	YJL045W	P47052	634 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	EAR1	Q03212	550 aa		3.9	□□□□□ -1.79
LCB4	YOR171C	YER152C	P10356	443 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	KIP1	P28742	1111 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	GPB2	P39717	880 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	SIP5	P40210	489 aa	Known RBP	3.89	□□□□□ -1.79
LCB4	YOR171C	NOP2	P40991	618 aa	Known RBP	3.89	□□□□□ -1.79
LCB4	YOR171C	BUD6	P41697	788 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	PFD1	P46988	109 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	TIM54	P47045	478 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	RPN4	Q03465	531 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	FMP25	Q08023	583 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	YPL260W	Q08977	551 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	GNT1	Q12096	491 aa		3.89	□□□□□ -1.79
LCB4	YOR171C	RPS4A	P0CX35	261 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	RPS4B	P0CX36	261 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	KAR1	P11927	433 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	NAM7	P30771	971 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	PGM1	P33401	570 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.88	□□□□□ -1.79	not detected
LCB4	YOR171C	AKR1	P39010	764 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	MEH1	Q02205	184 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	TLG1	Q03322	224 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	GIC2	Q06648	383 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	PPM2	Q08282	695 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	PUS7	Q08647	676 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	SPO21	Q12411	609 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	RPL8B	P29453	256 aa	Known RBP	3.88	□□□□□ -1.79
LCB4	YOR171C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	3.88	□□□□□ -1.79	not detected
LCB4	YOR171C	PBY1	P38254	753 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	SKN7	P38889	622 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	IRR1	P40541	1150 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	DNM1	P54861	757 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	TPP1	Q03796	238 aa		3.88	□□□□□ -1.79
LCB4	YOR171C	COG4	Q06096	861 aa		3.88	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms