RNA–Protein interactions for RNA: YJL029C

VPS53, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeast

Gene VPS53, Length 2,469 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS53	YJL029C	NMA111	P53920	997 aa		4.1	□□□□□ -1.75
VPS53	YJL029C	PTA1	Q01329	785 aa	Predicted RBP	4.1	□□□□□ -1.75
VPS53	YJL029C	UTP4	Q06679	776 aa	Known RBP	4.1	□□□□□ -1.75
VPS53	YJL029C	MSC6	Q08818	692 aa	Known RBP	4.1	□□□□□ -1.75
VPS53	YJL029C	MOT1	P32333	1867 aa		4.1	□□□□□ -1.75
VPS53	YJL029C	POX1	P13711	748 aa		4.09	□□□□□ -1.75
VPS53	YJL029C	PWP2	P25635	923 aa	Known RBP	4.09	□□□□□ -1.75
VPS53	YJL029C	PAM1	P37304	830 aa	Known RBP	4.09	□□□□□ -1.75
VPS53	YJL029C	UBP14	P38237	781 aa	Known RBP	4.09	□□□□□ -1.75
VPS53	YJL029C	MSC7	P38694	644 aa		4.09	□□□□□ -1.75
VPS53	YJL029C	FAR11	P53917	953 aa		4.09	□□□□□ -1.75
VPS53	YJL029C	GYP1	Q08484	637 aa		4.09	□□□□□ -1.75
VPS53	YJL029C	RPL8A	P17076	256 aa	Known RBP	4.09	□□□□□ -1.76
VPS53	YJL029C	BMH2	P34730	273 aa	Known RBP	4.09	□□□□□ -1.76
VPS53	YJL029C	DBP7	P36120	742 aa	Known RBP	4.09	□□□□□ -1.76
VPS53	YJL029C	BRN1	P38170	754 aa		4.09	□□□□□ -1.76
VPS53	YJL029C	PAN5	P38787	379 aa		4.09	□□□□□ -1.76
VPS53	YJL029C	AFG3	P39925	761 aa		4.09	□□□□□ -1.76
VPS53	YJL029C	PDC1	P06169	563 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	SAM1	P10659	382 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	KIC1	P38692	1080 aa		4.08	□□□□□ -1.76
VPS53	YJL029C	CIC1	P38779	376 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	NOC2	P39744	710 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	AIM9	P40053	627 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	FMS1	P50264	508 aa		4.08	□□□□□ -1.76
VPS53	YJL029C	GDE1	Q02979	1223 aa		4.08	□□□□□ -1.76
VPS53	YJL029C	SLD5	Q03406	294 aa		4.08	□□□□□ -1.76
VPS53	YJL029C	BUL2	Q03758	920 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	DUS3	Q06053	668 aa	Known RBP	4.08	□□□□□ -1.76
VPS53	YJL029C	CBP3	P21560	335 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	DLD1	P32891	587 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	GRS1	P38088	690 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	POA1	P38218	177 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	CSM2	P40465	213 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	TFB3	Q03290	321 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	OYE2	Q03558	400 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	YML082W	Q04533	649 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	ESF1	Q06344	628 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	CEX1	Q12453	761 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	RTP1	Q12751	981 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	RIF1	P29539	1916 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	MATALPHA2	P0CY08	210 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	HMLALPHA2	P0CY09	210 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	ACE2	P21192	770 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	YUR1	P26725	428 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	CLB5	P30283	435 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	IMP2'	P32351	346 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	FBP26	P32604	452 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	SKP2	P42843	763 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	BRE5	P53741	515 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	DAK1	P54838	584 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	YDR341C	Q05506	607 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	YLR326W	Q06170	240 aa	Known RBP	4.07	□□□□□ -1.76
VPS53	YJL029C	PSK2	Q08217	1101 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	ISU2	Q12056	156 aa		4.07	□□□□□ -1.76
VPS53	YJL029C	CIT1	P00890	479 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	BUD2	P33314	1104 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	REG2	P38232	338 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	HUL5	P53119	910 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	MDR1	P53258	950 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	CNM67	P53865	581 aa	Known RBP	4.06	□□□□□ -1.76
VPS53	YJL029C	YMR321C	Q04898	105 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	YOR111W	Q99210	232 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
VPS53	YJL029C	SES1	P07284	462 aa	Known RBP	4.06	□□□□□ -1.76
VPS53	YJL029C	RXT2	P38255	430 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	YHL017W	P38745	532 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	YKE2	P52553	114 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	YGL138C	P53122	345 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	NAF1	P53919	492 aa	Known RBP	4.06	□□□□□ -1.76
VPS53	YJL029C	HDA1	P53973	706 aa		4.06	□□□□□ -1.76
VPS53	YJL029C	RAD54	P32863	898 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	SAS3	P34218	831 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	TVP38	P36164	337 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	RET3	P53600	189 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	PHM6	Q05637	104 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	PGK1	P00560	416 aa	Known RBP	4.05	□□□□□ -1.76
VPS53	YJL029C	RNR2	P09938	399 aa	Known RBP	4.05	□□□□□ -1.76
VPS53	YJL029C	BRL1	P38770	471 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	HXT13	P39924	564 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	YGR035C	P53222	116 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	HXT17	P53631	564 aa		4.05	□□□□□ -1.76
VPS53	YJL029C	KEX1	P09620	729 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	SHP1	P34223	423 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	AKR1	P39010	764 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	YEL025C	P39991	1188 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	CUS1	Q02554	436 aa	Predicted RBP	4.04	□□□□□ -1.76
VPS53	YJL029C	MFM1	Q02783	413 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	MSC2	Q03455	724 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	SKY1	Q03656	742 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	YLR407W	Q06070	228 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	SUE1	Q06524	206 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	TOM1	Q03280	3268 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	UBR2	Q07963	1872 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	MET6	P05694	767 aa	Known RBP	4.04	□□□□□ -1.76
VPS53	YJL029C	TRL1	P09880	827 aa	Known RBP	4.04	□□□□□ -1.76
VPS53	YJL029C	FUB1	P25659	250 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	DUR3	P33413	735 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	SUL1	P38359	859 aa		4.04	□□□□□ -1.76
VPS53	YJL029C	ATG32	P40458	529 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 9.6 ms