RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W RIT1P23796 513 aa5.66□□□□□ -1.5
VPS29YHR012W PWP2P25635 923 aaKnown RBP5.66□□□□□ -1.5
VPS29YHR012W GCD11P32481 527 aaKnown RBP5.66□□□□□ -1.5
VPS29YHR012W PRS1P32895 427 aaKnown RBP5.66□□□□□ -1.5
VPS29YHR012W KTR2P33550 425 aa5.66□□□□□ -1.5
VPS29YHR012W SKI2P35207 1287 aaKnown RBP RIP-Chip data5.66□□□□□ -1.5not detected
VPS29YHR012W CRG1P38892 291 aaRIP-Chip data5.66□□□□□ -1.5not detected
VPS29YHR012W DAK1P54838 584 aaKnown RBP5.66□□□□□ -1.5
VPS29YHR012W RPT6Q01939 405 aaKnown RBP5.66□□□□□ -1.5
VPS29YHR012W HED1Q03937 162 aa5.66□□□□□ -1.5
VPS29YHR012W SPN1Q06505 410 aaPredicted RBP5.66□□□□□ -1.5
VPS29YHR012W ERP3Q12403 225 aa5.66□□□□□ -1.5
VPS29YHR012W CHO2P05374 869 aaKnown RBP5.65□□□□□ -1.5
VPS29YHR012W MIP1P15801 1254 aa5.65□□□□□ -1.5
VPS29YHR012W PAT1P25644 796 aaKnown RBP5.65□□□□□ -1.5
VPS29YHR012W ANP1P32629 500 aa5.65□□□□□ -1.5
VPS29YHR012W MYO3P36006 1272 aa5.65□□□□□ -1.5
VPS29YHR012W GUA1P38625 525 aaKnown RBP5.65□□□□□ -1.5
VPS29YHR012W TPM2P40414 161 aa5.65□□□□□ -1.5
VPS29YHR012W LIF1P53150 421 aa5.65□□□□□ -1.5
VPS29YHR012W YML020WQ03722 664 aa5.65□□□□□ -1.5
VPS29YHR012W TMA64Q04600 565 aaKnown RBP5.65□□□□□ -1.5
VPS29YHR012W ESF1Q06344 628 aaKnown RBP5.65□□□□□ -1.5
VPS29YHR012W UTP4Q06679 776 aaKnown RBP5.65□□□□□ -1.5
VPS29YHR012W YDR524C-BQ3E6R4 66 aa5.65□□□□□ -1.5
VPS29YHR012W YMR084WA2P2R3 262 aa5.64□□□□□ -1.51
VPS29YHR012W AFT1P22149 690 aa5.64□□□□□ -1.51
VPS29YHR012W YUR1P26725 428 aa5.64□□□□□ -1.51
VPS29YHR012W REG2P38232 338 aa5.64□□□□□ -1.51
VPS29YHR012W JHD1P40034 492 aa5.64□□□□□ -1.51
VPS29YHR012W ALD5P40047 520 aaKnown RBP5.64□□□□□ -1.51
VPS29YHR012W RSC8P43609 557 aaKnown RBP5.64□□□□□ -1.51
VPS29YHR012W DUS3Q06053 668 aaKnown RBP5.64□□□□□ -1.51
VPS29YHR012W HIP1P06775 603 aa5.63□□□□□ -1.51
VPS29YHR012W RPL8AP17076 256 aaKnown RBP5.63□□□□□ -1.51
VPS29YHR012W PRO3P32263 286 aaKnown RBP5.63□□□□□ -1.51
VPS29YHR012W SHP1P34223 423 aa5.63□□□□□ -1.51
VPS29YHR012W SIS2P36024 562 aa5.63□□□□□ -1.51
VPS29YHR012W DBP7P36120 742 aaKnown RBP5.63□□□□□ -1.51
VPS29YHR012W HUL5P53119 910 aa5.63□□□□□ -1.51
VPS29YHR012W YDR090CQ03193 310 aa5.63□□□□□ -1.51
VPS29YHR012W FPR4Q06205 392 aaPredicted RBP5.63□□□□□ -1.51
VPS29YHR012W TY1A-DR4O74302 440 aa5.62□□□□□ -1.51
VPS29YHR012W SES1P07284 462 aaKnown RBP5.62□□□□□ -1.51
VPS29YHR012W VAS1P07806 1104 aaKnown RBP5.62□□□□□ -1.51
VPS29YHR012W TY1A-HP0C2I4 478 aaKnown RBP5.62□□□□□ -1.51
VPS29YHR012W TY1A-AP0CX57 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-PR1P0CX58 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-ORP0CX59 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-PR2P0CX60 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-DR5P0CX65 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-ER2P0CX66 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-GR3P0CX67 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-LR1P0CX68 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-MR2P0CX69 440 aa5.62□□□□□ -1.51
VPS29YHR012W MAK31P23059 88 aa5.62□□□□□ -1.51
VPS29YHR012W RER2P35196 286 aa5.62□□□□□ -1.51
VPS29YHR012W HMF1P40037 129 aaKnown RBP5.62□□□□□ -1.51
VPS29YHR012W TY1A-JR2P47099 440 aa5.62□□□□□ -1.51
VPS29YHR012W FMS1P50264 508 aa5.62□□□□□ -1.51
VPS29YHR012W FOL2P51601 243 aaKnown RBP5.62□□□□□ -1.51
VPS29YHR012W MSC2Q03455 724 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-DR1Q03856 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-ML1Q04706 440 aaKnown RBP5.62□□□□□ -1.51
VPS29YHR012W NKP2Q06162 153 aa5.62□□□□□ -1.51
VPS29YHR012W RIM20Q12033 661 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-BRQ12217 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-NL2Q12470 440 aa5.62□□□□□ -1.51
VPS29YHR012W TY1A-GR2Q12485 440 aa5.62□□□□□ -1.51
VPS29YHR012W RKM4Q12504 494 aa5.62□□□□□ -1.51
VPS29YHR012W SWI6P09959 803 aa5.61□□□□□ -1.51
VPS29YHR012W DUR3P33413 735 aa5.61□□□□□ -1.51
VPS29YHR012W POA1P38218 177 aa5.61□□□□□ -1.51
VPS29YHR012W SPO74P45819 413 aa5.61□□□□□ -1.51
VPS29YHR012W YGL039WP53183 348 aaKnown RBP5.61□□□□□ -1.51
VPS29YHR012W MDM1Q01846 1127 aa5.61□□□□□ -1.51
VPS29YHR012W MYO5Q04439 1219 aaKnown RBP5.61□□□□□ -1.51
VPS29YHR012W LCB5Q06147 687 aaKnown RBP5.61□□□□□ -1.51
VPS29YHR012W YLL058WQ12198 575 aa5.61□□□□□ -1.51
VPS29YHR012W MYO1P08964 1928 aa5.6□□□□□ -1.51
VPS29YHR012W RAD50P12753 1312 aa5.6□□□□□ -1.51
VPS29YHR012W IDI1P15496 288 aa5.6□□□□□ -1.51
VPS29YHR012W SEC2P17065 759 aa5.6□□□□□ -1.51
VPS29YHR012W BRL1P38770 471 aa5.6□□□□□ -1.51
VPS29YHR012W RRN7P40992 514 aa5.6□□□□□ -1.51
VPS29YHR012W SGM1P47166 707 aa5.6□□□□□ -1.51
VPS29YHR012W AZR1P50080 613 aa5.6□□□□□ -1.51
VPS29YHR012W YNR014WP53719 212 aa5.6□□□□□ -1.51
VPS29YHR012W PTA1Q01329 785 aaPredicted RBP5.6□□□□□ -1.51
VPS29YHR012W YMR321CQ04898 105 aa5.6□□□□□ -1.51
VPS29YHR012W VIP1Q06685 1146 aaKnown RBP5.6□□□□□ -1.51
VPS29YHR012W DSE3Q08729 430 aa5.6□□□□□ -1.51
VPS29YHR012W MAS2P11914 482 aa5.59□□□□□ -1.51
VPS29YHR012W POT1P27796 417 aaKnown RBP RIP-Chip data5.59□□□□□ -1.51not detected
VPS29YHR012W RME1P32338 300 aaKnown RBP5.59□□□□□ -1.51
VPS29YHR012W UBP15P50101 1230 aa5.59□□□□□ -1.51
VPS29YHR012W MDR1P53258 950 aa5.59□□□□□ -1.51
VPS29YHR012W VPS72Q03388 795 aa5.59□□□□□ -1.51
VPS29YHR012W SKY1Q03656 742 aa5.59□□□□□ -1.51
VPS29YHR012W EST2Q06163 884 aa5.59□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 19.2 ms