RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeastyeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SMC1YFL008W MON1P53129 644 aa1.96□□□□□ -2.1
SMC1YFL008W PUF3Q07807 879 aaKnown RBP RIP-Chip data1.96□□□□□ -2.1not detected
SMC1YFL008W YIL177CP40434 1758 aa1.96□□□□□ -2.1
SMC1YFL008W YJL225CP40889 1758 aa1.96□□□□□ -2.1
SMC1YFL008W HEM3P28789 327 aa1.96□□□□□ -2.1
SMC1YFL008W RER2P35196 286 aa1.96□□□□□ -2.1
SMC1YFL008W RPS26AP39938 119 aaKnown RBP1.96□□□□□ -2.1
SMC1YFL008W RPS26BP39939 119 aaKnown RBP1.96□□□□□ -2.1
SMC1YFL008W DSE4P53753 1117 aa1.96□□□□□ -2.1
SMC1YFL008W RAT1Q02792 1006 aaKnown RBP1.96□□□□□ -2.1
SMC1YFL008W ESC2Q06340 456 aa1.96□□□□□ -2.1
SMC1YFL008W IQG1Q12280 1495 aa1.96□□□□□ -2.1
SMC1YFL008W PDR15Q04182 1529 aaKnown RBP1.96□□□□□ -2.1
SMC1YFL008W BUD3P25558 1636 aa1.95□□□□□ -2.1
SMC1YFL008W SPO74P45819 413 aa1.95□□□□□ -2.1
SMC1YFL008W SIW14P53965 281 aa1.95□□□□□ -2.1
SMC1YFL008W DAL4Q04895 635 aa1.95□□□□□ -2.1
SMC1YFL008W LRG1P35688 1017 aa1.95□□□□□ -2.1
SMC1YFL008W FET4P40988 552 aa1.95□□□□□ -2.1
SMC1YFL008W PFD1P46988 109 aa1.95□□□□□ -2.1
SMC1YFL008W POL32P47110 350 aa1.95□□□□□ -2.1
SMC1YFL008W UTP22P53254 1237 aaPredicted RBP1.95□□□□□ -2.1
SMC1YFL008W VPS16Q03308 798 aa1.95□□□□□ -2.1
SMC1YFL008W PMT7Q06644 662 aa1.95□□□□□ -2.1
SMC1YFL008W CDC34P14682 295 aa1.95□□□□□ -2.1
SMC1YFL008W YHR020WP38708 688 aaKnown RBP1.95□□□□□ -2.1
SMC1YFL008W YVC1Q12324 675 aa1.95□□□□□ -2.1
SMC1YFL008W VMR1P38735 1592 aa1.94□□□□□ -2.1
SMC1YFL008W SAF1P38352 637 aa1.94□□□□□ -2.1
SMC1YFL008W PEX28P38848 579 aa1.94□□□□□ -2.1
SMC1YFL008W IRC24P40580 263 aa1.94□□□□□ -2.1
SMC1YFL008W RSC2Q06488 889 aa1.94□□□□□ -2.1
SMC1YFL008W PPM2Q08282 695 aa1.94□□□□□ -2.1
SMC1YFL008W PIN2Q12057 282 aa1.94□□□□□ -2.1
SMC1YFL008W GPT2P36148 743 aa1.94□□□□□ -2.1
SMC1YFL008W ROD1Q02805 837 aa1.94□□□□□ -2.1
SMC1YFL008W RKM2Q03942 479 aa1.94□□□□□ -2.1
SMC1YFL008W ALG6Q12001 544 aaKnown RBP1.94□□□□□ -2.1
SMC1YFL008W SEC20P28791 383 aa1.94□□□□□ -2.1
SMC1YFL008W FIR1P40020 876 aa1.94□□□□□ -2.1
SMC1YFL008W SAM37P50110 327 aa1.94□□□□□ -2.1
SMC1YFL008W SPP382Q06411 708 aaPredicted RBP1.94□□□□□ -2.1
SMC1YFL008W CDA2Q06703 312 aa1.94□□□□□ -2.1
SMC1YFL008W SEC7P11075 2009 aaKnown RBP1.94□□□□□ -2.1
SMC1YFL008W RRP5Q05022 1729 aaKnown RBP1.93□□□□□ -2.1
SMC1YFL008W TY4A-JP47023 414 aa1.93□□□□□ -2.1
SMC1YFL008W ORC1P54784 914 aaPredicted RBP1.93□□□□□ -2.1
SMC1YFL008W TIF35Q04067 274 aaKnown RBP1.93□□□□□ -2.1
SMC1YFL008W YHL008CP38750 627 aa1.93□□□□□ -2.1
SMC1YFL008W USO1P25386 1790 aa1.93□□□□□ -2.1
SMC1YFL008W MAL11P53048 616 aa1.93□□□□□ -2.1
SMC1YFL008W SLU7Q02775 382 aaKnown RBP1.93□□□□□ -2.1
SMC1YFL008W YDR132CQ03900 495 aa1.93□□□□□ -2.1
SMC1YFL008W RSA3Q05942 220 aaKnown RBP1.93□□□□□ -2.1
SMC1YFL008W NMD3P38861 518 aaKnown RBP1.92□□□□□ -2.1
SMC1YFL008W ENT3P47160 408 aa1.92□□□□□ -2.1
SMC1YFL008W SPO21Q12411 609 aa1.92□□□□□ -2.1
SMC1YFL008W LAS17Q12446 633 aa1.92□□□□□ -2.1
SMC1YFL008W YER152CP10356 443 aa1.92□□□□□ -2.1
SMC1YFL008W GCD6P32501 712 aaKnown RBP1.92□□□□□ -2.1
SMC1YFL008W PUB1P32588 453 aaKnown RBP RIP-Chip data1.92□□□□□ -2.1not detected
SMC1YFL008W SLA2P33338 968 aa1.92□□□□□ -2.1
SMC1YFL008W BUL1P48524 976 aa1.92□□□□□ -2.1
SMC1YFL008W YKE2P52553 114 aa1.92□□□□□ -2.1
SMC1YFL008W SSF2Q12153 453 aaPredicted RBP1.92□□□□□ -2.1
SMC1YFL008W TAF13P11747 167 aa1.92□□□□□ -2.1
SMC1YFL008W SMY2P32909 740 aaKnown RBP1.92□□□□□ -2.1
SMC1YFL008W MAE1P36013 669 aaKnown RBP1.92□□□□□ -2.1
SMC1YFL008W PNT1P38969 423 aa1.92□□□□□ -2.1
SMC1YFL008W XKS1P42826 600 aa1.92□□□□□ -2.1
SMC1YFL008W AVT1P47082 602 aa1.92□□□□□ -2.1
SMC1YFL008W FAA4P47912 694 aaKnown RBP1.92□□□□□ -2.1
SMC1YFL008W DUS4Q06063 367 aa1.92□□□□□ -2.1
SMC1YFL008W YOR223WQ12015 292 aa1.92□□□□□ -2.1
SMC1YFL008W GPR1Q12361 961 aa1.92□□□□□ -2.1
SMC1YFL008W TRP2P00899 507 aaKnown RBP1.91□□□□□ -2.1
SMC1YFL008W FBP1P09201 348 aa1.91□□□□□ -2.1
SMC1YFL008W BUD6P41697 788 aa1.91□□□□□ -2.1
SMC1YFL008W HBS1P32769 611 aaKnown RBP1.91□□□□□ -2.1
SMC1YFL008W ELM1P32801 640 aa1.91□□□□□ -2.1
SMC1YFL008W QNS1P38795 714 aaKnown RBP1.91□□□□□ -2.1
SMC1YFL008W PLB2Q03674 706 aa1.91□□□□□ -2.1
SMC1YFL008W ADD66P36040 267 aa1.9□□□□□ -2.1
SMC1YFL008W SLI1P53304 468 aa1.9□□□□□ -2.1
SMC1YFL008W OYE2Q03558 400 aaKnown RBP1.9□□□□□ -2.1
SMC1YFL008W DOT1Q04089 582 aaKnown RBP1.9□□□□□ -2.1
SMC1YFL008W ATG13Q06628 738 aa1.9□□□□□ -2.1
SMC1YFL008W PUS7Q08647 676 aaKnown RBP1.9□□□□□ -2.1
SMC1YFL008W MCD1Q12158 566 aa1.9□□□□□ -2.1
SMC1YFL008W ALG3P38179 458 aa1.9□□□□□ -2.11
SMC1YFL008W REI1P38344 393 aaPredicted RBP1.9□□□□□ -2.11
SMC1YFL008W CIC1P38779 376 aaKnown RBP1.9□□□□□ -2.11
SMC1YFL008W NEO1P40527 1151 aa1.9□□□□□ -2.11
SMC1YFL008W IOC3P43596 787 aa1.9□□□□□ -2.11
SMC1YFL008W YJL045WP47052 634 aa1.9□□□□□ -2.11
SMC1YFL008W RMD1Q03441 430 aa1.9□□□□□ -2.11
SMC1YFL008W NAB6Q03735 1134 aaKnown RBP RIP-Chip data1.9□□□□□ -2.11not detected
SMC1YFL008W BRE4Q07660 1125 aa1.9□□□□□ -2.11
SMC1YFL008W TAF2P23255 1407 aa1.9□□□□□ -2.11
SMC1YFL008W DBP5P20449 482 aaKnown RBP1.9□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms