RNA–Protein interactions for RNA: YDR407C

TRS120, Transcript of Component of transport protein particle (TRAPP) complex II, yeast

Gene TRS120, Length 3,870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRS120	YDR407C	BIM1	P40013	344 aa		4	□□□□□ -1.77
TRS120	YDR407C	BUG1	Q12191	341 aa		4	□□□□□ -1.77
TRS120	YDR407C	EUG1	P32474	517 aa		4	□□□□□ -1.77
TRS120	YDR407C	PAN5	P38787	379 aa		4	□□□□□ -1.77
TRS120	YDR407C	TRP2	P00899	507 aa	Known RBP	3.99	□□□□□ -1.77
TRS120	YDR407C	CDC10	P25342	322 aa	Known RBP	3.99	□□□□□ -1.77
TRS120	YDR407C	YCR051W	P25631	222 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	PTK1	P36002	662 aa	Predicted RBP	3.99	□□□□□ -1.77
TRS120	YDR407C	RTT107	P38850	1070 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	ALG2	P43636	503 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	MTC3	P53077	123 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	ENV11	P53246	860 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	VTI1	Q04338	217 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	TMA64	Q04600	565 aa	Known RBP	3.99	□□□□□ -1.77
TRS120	YDR407C	GUD1	Q07729	489 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	RIO1	Q12196	484 aa	Known RBP	3.99	□□□□□ -1.77
TRS120	YDR407C	YBR032W	P38223	100 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	KIN4	Q01919	800 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	DIG1	Q03063	452 aa	Known RBP	3.99	□□□□□ -1.77
TRS120	YDR407C	SRC1	Q03707	834 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	YML002W	P0CF17	737 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	KIN1	P13185	1064 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	YGL140C	P53120	1219 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	YLR177W	Q06251	628 aa		3.99	□□□□□ -1.77
TRS120	YDR407C	RGP1	P16664	663 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	SRM1	P21827	482 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	NGR1	P32831	672 aa	Known RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	VID27	P40157	782 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	YIR042C	P40586	236 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	PPM1	Q04081	328 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	ATG23	Q06671	453 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	TLG2	Q08144	397 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	ADE3	P07245	946 aa	Known RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	KEX2	P13134	814 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	MFT1	P33441	392 aa	Known RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	KTR2	P33550	425 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	PPX1	P38698	397 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	RPT4	P53549	437 aa	Known RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	SEC5	P89102	971 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	EEB1	Q02891	456 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	YMR187C	Q03236	431 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	ECI1	Q05871	280 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	PCL8	Q08966	492 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	PLP2	Q12017	286 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	YLR422W	Q06409	1932 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
TRS120	YDR407C	PMC1	P38929	1173 aa	Predicted RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	APT1	P49435	187 aa	Known RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	RTC4	P53850	401 aa		3.98	□□□□□ -1.77
TRS120	YDR407C	RIX7	Q07844	837 aa	Known RBP	3.98	□□□□□ -1.77
TRS120	YDR407C	HSP82	P02829	709 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	PMR1	P13586	950 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	HEM15	P16622	393 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	SFL1	P20134	766 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	IMP2'	P32351	346 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	ECM32	P32644	1121 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	NFU1	P32860	256 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	RAD26	P40352	1085 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	CIT3	P43635	486 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	TRM2	P33753	639 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	IES1	P43579	692 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	PRP31	P49704	494 aa	Predicted RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	UBA2	P52488	636 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	YDR341C	Q05506	607 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	THR4	P16120	514 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	PRP9	P19736	530 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	RPT3	P33298	428 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	SIS2	P36024	562 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	UBP11	P36026	717 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	LCB2	P40970	561 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	RPN11	P43588	306 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	ASE1	P50275	885 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	ALD6	P54115	500 aa	Known RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	BDF2	Q07442	638 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	CWC2	Q12046	339 aa	Predicted RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	DIP2	Q12220	943 aa	Predicted RBP	3.97	□□□□□ -1.77
TRS120	YDR407C	YDL206W	Q12424	762 aa		3.97	□□□□□ -1.77
TRS120	YDR407C	RPS3	P05750	240 aa	Known RBP	3.96	□□□□□ -1.77
TRS120	YDR407C	PRP16	P15938	1071 aa	Predicted RBP	3.96	□□□□□ -1.77
TRS120	YDR407C	RIT1	P23796	513 aa		3.96	□□□□□ -1.77
TRS120	YDR407C	NAM7	P30771	971 aa	Known RBP	3.96	□□□□□ -1.77
TRS120	YDR407C	YNL320W	P42840	284 aa		3.96	□□□□□ -1.77
TRS120	YDR407C	APL6	P46682	809 aa		3.96	□□□□□ -1.77
TRS120	YDR407C	ERV41	Q04651	352 aa		3.96	□□□□□ -1.77
TRS120	YDR407C	SSB1	P11484	613 aa	Known RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	TRZ1	P36159	838 aa	Predicted RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	FTH1	P38310	465 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	MRX1	P40050	688 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	SSB2	P40150	613 aa	Known RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	HXT8	P40886	569 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	NBP1	P52919	319 aa	Predicted RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	YGR021W	P53212	290 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	MFM1	Q02783	413 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	SPP382	Q06411	708 aa	Predicted RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	RLP24	Q07915	199 aa	Known RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	GAS5	Q08193	484 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	TOM70	P07213	617 aa	Known RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	RET1	P22276	1149 aa	Known RBP	3.96	□□□□□ -1.78
TRS120	YDR407C	PRE8	P23639	250 aa		3.96	□□□□□ -1.78
TRS120	YDR407C	APL1	P27351	700 aa		3.96	□□□□□ -1.78

Retrieved 100 of 5,963 RNA–protein pairs in 39.6 ms