RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W RPT6Q01939 405 aaKnown RBP6.83□□□□□ -1.32
SHP1YBL058W SSF2Q12153 453 aaPredicted RBP6.83□□□□□ -1.32
SHP1YBL058W FKS1P38631 1876 aaKnown RBP6.83□□□□□ -1.32
SHP1YBL058W COX6P00427 148 aa6.82□□□□□ -1.32
SHP1YBL058W SRP54P20424 541 aaKnown RBP6.82□□□□□ -1.32
SHP1YBL058W DUR3P33413 735 aa6.82□□□□□ -1.32
SHP1YBL058W ALD5P40047 520 aaKnown RBP6.82□□□□□ -1.32
SHP1YBL058W CSM2P40465 213 aa6.82□□□□□ -1.32
SHP1YBL058W INP51P40559 946 aaKnown RBP6.82□□□□□ -1.32
SHP1YBL058W RPS7BP48164 190 aaKnown RBP6.82□□□□□ -1.32
SHP1YBL058W AZR1P50080 613 aa6.82□□□□□ -1.32
SHP1YBL058W FMS1P50264 508 aa6.82□□□□□ -1.32
SHP1YBL058W LIF1P53150 421 aa6.82□□□□□ -1.32
SHP1YBL058W ESF1Q06344 628 aaKnown RBP6.82□□□□□ -1.32
SHP1YBL058W RIF1P29539 1916 aa6.82□□□□□ -1.32
SHP1YBL058W AFT1P22149 690 aa6.81□□□□□ -1.32
SHP1YBL058W TVP23P38962 199 aa6.81□□□□□ -1.32
SHP1YBL058W XDJ1P39102 459 aa6.81□□□□□ -1.32
SHP1YBL058W MSC2Q03455 724 aa6.81□□□□□ -1.32
SHP1YBL058W MYO5Q04439 1219 aaKnown RBP6.81□□□□□ -1.32
SHP1YBL058W YLR326WQ06170 240 aaKnown RBP6.81□□□□□ -1.32
SHP1YBL058W DAP1Q12091 152 aa6.81□□□□□ -1.32
SHP1YBL058W ATG11Q12527 1178 aa6.81□□□□□ -1.32
SHP1YBL058W SWI6P09959 803 aa6.8□□□□□ -1.32
SHP1YBL058W POL3P15436 1097 aa6.8□□□□□ -1.32
SHP1YBL058W MAK31P23059 88 aa6.8□□□□□ -1.32
SHP1YBL058W RAD54P32863 898 aa6.8□□□□□ -1.32
SHP1YBL058W TFG1P41895 735 aaPredicted RBP6.8□□□□□ -1.32
SHP1YBL058W PTA1Q01329 785 aaPredicted RBP6.8□□□□□ -1.32
SHP1YBL058W ECM16Q04217 1267 aaKnown RBP6.8□□□□□ -1.32
SHP1YBL058W NKP2Q06162 153 aa6.8□□□□□ -1.32
SHP1YBL058W YDL129WQ07555 291 aa6.8□□□□□ -1.32
SHP1YBL058W RIM20Q12033 661 aa6.8□□□□□ -1.32
SHP1YBL058W IDI1P15496 288 aa6.79□□□□□ -1.32
SHP1YBL058W RER2P35196 286 aa6.79□□□□□ -1.32
SHP1YBL058W SKI2P35207 1287 aaKnown RBP RIP-Chip data6.79□□□□□ -1.32not detected
SHP1YBL058W CRG1P38892 291 aaRIP-Chip data6.79□□□□□ -1.32not detected
SHP1YBL058W SPO74P45819 413 aa6.79□□□□□ -1.32
SHP1YBL058W YGR035CP53222 116 aa6.79□□□□□ -1.32
SHP1YBL058W SPN1Q06505 410 aaPredicted RBP6.79□□□□□ -1.32
SHP1YBL058W SAM3Q08986 587 aa6.79□□□□□ -1.32
SHP1YBL058W UGA4P32837 571 aa6.78□□□□□ -1.32
SHP1YBL058W NUP42P49686 430 aaKnown RBP6.78□□□□□ -1.32
SHP1YBL058W MDM1Q01846 1127 aa6.78□□□□□ -1.32
SHP1YBL058W SKY1Q03656 742 aa6.78□□□□□ -1.32
SHP1YBL058W TFC6Q06339 672 aa6.78□□□□□ -1.32
SHP1YBL058W HTA1P04911 132 aaKnown RBP6.77□□□□□ -1.33
SHP1YBL058W HTA2P04912 132 aa6.77□□□□□ -1.33
SHP1YBL058W FUB1P25659 250 aa6.77□□□□□ -1.33
SHP1YBL058W ALG2P43636 503 aa6.77□□□□□ -1.33
SHP1YBL058W UBP15P50101 1230 aa6.77□□□□□ -1.33
SHP1YBL058W YGR273CP53329 174 aa6.77□□□□□ -1.33
SHP1YBL058W EMI2Q04409 500 aaKnown RBP6.77□□□□□ -1.33
SHP1YBL058W YLL058WQ12198 575 aa6.77□□□□□ -1.33
SHP1YBL058W SPT2P06843 333 aaPredicted RBP6.76□□□□□ -1.33
SHP1YBL058W KIN82P25341 720 aa6.76□□□□□ -1.33
SHP1YBL058W RME1P32338 300 aaKnown RBP6.76□□□□□ -1.33
SHP1YBL058W IMP2'P32351 346 aa6.76□□□□□ -1.33
SHP1YBL058W AAP1P37898 856 aaKnown RBP6.76□□□□□ -1.33
SHP1YBL058W HMF1P40037 129 aaKnown RBP6.76□□□□□ -1.33
SHP1YBL058W FMP10P40098 244 aa6.76□□□□□ -1.33
SHP1YBL058W TPM2P40414 161 aa6.76□□□□□ -1.33
SHP1YBL058W OYE3P41816 400 aaPredicted RBP6.76□□□□□ -1.33
SHP1YBL058W MAP1Q01662 387 aaKnown RBP RIP-Chip data6.76□□□□□ -1.33not detected
SHP1YBL058W VIP1Q06685 1146 aaKnown RBP6.76□□□□□ -1.33
SHP1YBL058W DSE3Q08729 430 aa6.76□□□□□ -1.33
SHP1YBL058W PGA3Q12746 312 aaKnown RBP6.76□□□□□ -1.33
SHP1YBL058W YOR111WQ99210 232 aa6.76□□□□□ -1.33
SHP1YBL058W TOR2P32600 2474 aaKnown RBP6.75□□□□□ -1.33
SHP1YBL058W RPL8AP17076 256 aaKnown RBP6.75□□□□□ -1.33
SHP1YBL058W SYN8P31377 255 aa6.75□□□□□ -1.33
SHP1YBL058W PAN5P38787 379 aa6.75□□□□□ -1.33
SHP1YBL058W SAD1P43589 448 aa6.75□□□□□ -1.33
SHP1YBL058W VAS1P07806 1104 aaKnown RBP6.74□□□□□ -1.33
SHP1YBL058W KEX1P09620 729 aa6.74□□□□□ -1.33
SHP1YBL058W PWP2P25635 923 aaKnown RBP6.74□□□□□ -1.33
SHP1YBL058W URK1P27515 501 aa6.74□□□□□ -1.33
SHP1YBL058W TVP38P36164 337 aa6.74□□□□□ -1.33
SHP1YBL058W UBP14P38237 781 aaKnown RBP6.74□□□□□ -1.33
SHP1YBL058W CIC1P38779 376 aaKnown RBP6.74□□□□□ -1.33
SHP1YBL058W ASE1P50275 885 aa6.74□□□□□ -1.33
SHP1YBL058W INP52P50942 1183 aa6.74□□□□□ -1.33
SHP1YBL058W YNL034WP53963 612 aa6.74□□□□□ -1.33
SHP1YBL058W YNL018CP53976 612 aa6.74□□□□□ -1.33
SHP1YBL058W HEH2Q03281 663 aa6.74□□□□□ -1.33
SHP1YBL058W OXR1Q08952 273 aa6.74□□□□□ -1.33
SHP1YBL058W SMY2P32909 740 aaKnown RBP6.73□□□□□ -1.33
SHP1YBL058W VRP1P37370 817 aa6.73□□□□□ -1.33
SHP1YBL058W MET13P53128 600 aa6.73□□□□□ -1.33
SHP1YBL058W MDR1P53258 950 aa6.73□□□□□ -1.33
SHP1YBL058W CUS1Q02554 436 aaPredicted RBP6.73□□□□□ -1.33
SHP1YBL058W FPR4Q06205 392 aaPredicted RBP6.73□□□□□ -1.33
SHP1YBL058W MMR1Q06324 491 aa6.73□□□□□ -1.33
SHP1YBL058W WHI4Q07655 649 aaKnown RBP6.73□□□□□ -1.33
SHP1YBL058W GPI13Q07830 1017 aa6.73□□□□□ -1.33
SHP1YBL058W ARP6Q12509 438 aa6.73□□□□□ -1.33
SHP1YBL058W SES1P07284 462 aaKnown RBP6.72□□□□□ -1.33
SHP1YBL058W MSD1P15179 658 aaKnown RBP6.72□□□□□ -1.33
SHP1YBL058W TPM1P17536 199 aaKnown RBP6.72□□□□□ -1.33
SHP1YBL058W RDH54P38086 958 aa6.72□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 10.7 ms