RNA–Protein interactions for RNA: ENST00000622629.4

MSH6-215, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 4,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-215ENST00000622629 DNAAF4Q8WXU2 420 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 PLEKHF1Q96S99 279 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 APPP05067 770 aa15.41■□□□□ 0.06
MSH6-215ENST00000622629 SYTL4Q96C24 671 aaPredicted RBP15.41■□□□□ 0.06
MSH6-215ENST00000622629 TATP17735 454 aaPredicted RBP15.4■□□□□ 0.06
MSH6-215ENST00000622629 CASTP20810 708 aaKnown RBP15.4■□□□□ 0.06
MSH6-215ENST00000622629 SPG7Q9UQ90 795 aa15.4■□□□□ 0.06
MSH6-215ENST00000622629 MAP3K19Q56UN5 1328 aa15.39■□□□□ 0.06
MSH6-215ENST00000622629 EYA1Q99502 592 aa15.39■□□□□ 0.05
MSH6-215ENST00000622629 CROCC2H7BZ55 1655 aa15.39■□□□□ 0.05
MSH6-215ENST00000622629 WASHC4Q2M389 1173 aa15.39■□□□□ 0.05
MSH6-215ENST00000622629 VSIG10Q8N0Z9 540 aa15.39■□□□□ 0.05
MSH6-215ENST00000622629 IQGAP3Q86VI3 1631 aa15.39■□□□□ 0.05
MSH6-215ENST00000622629 CPLX1O14810 134 aa15.39■□□□□ 0.05
MSH6-215ENST00000622629 GLRX3O76003 335 aaKnown RBP15.39■□□□□ 0.05
MSH6-215ENST00000622629 CEBPZQ03701 1054 aaKnown RBP15.38■□□□□ 0.05
MSH6-215ENST00000622629 PRPF40BQ6NWY9 871 aaKnown RBP15.38■□□□□ 0.05
MSH6-215ENST00000622629 FERMT3Q86UX7 667 aa15.38■□□□□ 0.05
MSH6-215ENST00000622629 CCDC8Q9H0W5 538 aaPredicted RBP15.38■□□□□ 0.05
MSH6-215ENST00000622629 BOLA2Q9H3K6 86 aa15.38■□□□□ 0.05
MSH6-215ENST00000622629 PDRG1Q9NUG6 133 aa15.38■□□□□ 0.05
MSH6-215ENST00000622629 RBM27Q9P2N5 1060 aaKnown RBP15.38■□□□□ 0.05
MSH6-215ENST00000622629 PIP4K2BP78356 416 aa15.38■□□□□ 0.05
MSH6-215ENST00000622629 LARP1BQ659C4 914 aaKnown RBP15.38■□□□□ 0.05
MSH6-215ENST00000622629 CCDC39Q9UFE4 941 aa15.38■□□□□ 0.05
MSH6-215ENST00000622629 CDC42BPBQ9Y5S2 1711 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 PDE4CQ08493 712 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 CCDC83Q8IWF9 413 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 KCNH5Q8NCM2 988 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 MYOM2P54296 1465 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 RAB11FIP3O75154 756 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 RBM25P49756 843 aaKnown RBP15.37■□□□□ 0.05
MSH6-215ENST00000622629 BLOC1S2Q6QNY1 142 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 SASS6Q6UVJ0 657 aa15.37■□□□□ 0.05
MSH6-215ENST00000622629 HIP1O00291 1037 aa15.36■□□□□ 0.05
MSH6-215ENST00000622629 PDCP20941 246 aa15.36■□□□□ 0.05
MSH6-215ENST00000622629 TMX3Q96JJ7 454 aa15.36■□□□□ 0.05
MSH6-215ENST00000622629 ZGPATQ8N5A5 531 aaKnown RBP15.36■□□□□ 0.05
MSH6-215ENST00000622629 LTKP29376 864 aa15.36■□□□□ 0.05
MSH6-215ENST00000622629 NCBP3Q53F19 620 aaKnown RBP15.36■□□□□ 0.05
MSH6-215ENST00000622629 DBF4Q9UBU7 674 aaPredicted RBP15.36■□□□□ 0.05
MSH6-215ENST00000622629 PLXNC1O60486 1568 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 KLHL40Q2TBA0 621 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 LRRFIP1Q32MZ4 808 aaKnown RBP15.35■□□□□ 0.05
MSH6-215ENST00000622629 CHPF2Q9P2E5 772 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 CHL1O00533 1208 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 CABP4P57796 275 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 TPM4P67936 248 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 RAB3GAP1Q15042 981 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 RHPN1Q8TCX5 695 aa15.35■□□□□ 0.05
MSH6-215ENST00000622629 ZNF592Q92610 1267 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 CFAP74Q9C0B2 1584 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 KCNA6P17658 529 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 MSH6P52701 1360 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 CLTCL1P53675 1640 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 SPC24Q8NBT2 197 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 ESYT1Q9BSJ8 1104 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 EDC4Q6P2E9 1401 aaKnown RBP15.34■□□□□ 0.05
MSH6-215ENST00000622629 UNC13BO14795 1591 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 KDM4AO75164 1064 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 GTF2E1P29083 439 aaPredicted RBP15.34■□□□□ 0.05
MSH6-215ENST00000622629 ZSCAN30Q86W11 494 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 ABCA9Q8IUA7 1624 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 TTC21AQ8NDW8 1320 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 USP26Q9BXU7 913 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 MAP3K2Q9Y2U5 619 aa15.34■□□□□ 0.05
MSH6-215ENST00000622629 ATP8B2P98198 1209 aa15.33■□□□□ 0.05
MSH6-215ENST00000622629 TRDNQ13061 729 aa15.33■□□□□ 0.05
MSH6-215ENST00000622629 CCDC73Q6ZRK6 1079 aa15.33■□□□□ 0.05
MSH6-215ENST00000622629 BCL11BQ9C0K0 894 aaPredicted RBP15.33■□□□□ 0.05
MSH6-215ENST00000622629 STRN4Q9NRL3 753 aa15.33■□□□□ 0.04
MSH6-215ENST00000622629 HECW2Q9P2P5 1572 aa15.33■□□□□ 0.04
MSH6-215ENST00000622629 TULP1O00294 542 aaPredicted RBP15.33■□□□□ 0.04
MSH6-215ENST00000622629 RBM10P98175 930 aaKnown RBP15.33■□□□□ 0.04
MSH6-215ENST00000622629 CPLX2Q6PUV4 134 aaKnown RBP15.33■□□□□ 0.04
MSH6-215ENST00000622629 RALYLQ86SE5 291 aaKnown RBP15.33■□□□□ 0.04
MSH6-215ENST00000622629 PIK3R4Q99570 1358 aa15.32■□□□□ 0.04
MSH6-215ENST00000622629 KRT85P78386 507 aa15.32■□□□□ 0.04
MSH6-215ENST00000622629 JARID2Q92833 1246 aaPredicted RBP15.32■□□□□ 0.04
MSH6-215ENST00000622629 CCDC85AQ96PX6 553 aaPredicted RBP15.32■□□□□ 0.04
MSH6-215ENST00000622629 FLT4P35916 1363 aa15.32■□□□□ 0.04
MSH6-215ENST00000622629 PHAXQ9H814 394 aaKnown RBP15.32■□□□□ 0.04
MSH6-215ENST00000622629 LRRC59Q96AG4 307 aaKnown RBP15.31■□□□□ 0.04
MSH6-215ENST00000622629 MYD88Q99836 296 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 AMOTQ4VCS5 1084 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 SDF4Q9BRK5 362 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 TRIM5Q9C035 493 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 ECHDC1Q9NTX5 307 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 LIMCH1Q9UPQ0 1083 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 PTCD1O75127 700 aaKnown RBP15.31■□□□□ 0.04
MSH6-215ENST00000622629 DDX11Q96FC9 970 aa15.31■□□□□ 0.04
MSH6-215ENST00000622629 FAM177BA6PVY3 158 aa15.3■□□□□ 0.04
MSH6-215ENST00000622629 TOM1L2Q6ZVM7 507 aa15.3■□□□□ 0.04
MSH6-215ENST00000622629 CREBRFQ8IUR6 639 aa15.3■□□□□ 0.04
MSH6-215ENST00000622629 CHMP4CQ96CF2 233 aa15.3■□□□□ 0.04
MSH6-215ENST00000622629 LETM1O95202 739 aaPredicted RBP15.3■□□□□ 0.04
MSH6-215ENST00000622629 ZSCAN23Q3MJ62 389 aa15.3■□□□□ 0.04
MSH6-215ENST00000622629 LARP1Q6PKG0 1096 aaKnown RBP15.3■□□□□ 0.04
MSH6-215ENST00000622629 ZSCAN31Q96LW9 406 aaPredicted RBP15.29■□□□□ 0.04
MSH6-215ENST00000622629 GSPT1P15170 499 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms