RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 BCL11BQ9C0K0 894 aaPredicted RBP24.83■■□□□ 1.57
SSBP3-216ENST00000610401 UQCRHLA0A096LP55 91 aa24.83■■□□□ 1.56
SSBP3-216ENST00000610401 UQCRHP07919 91 aa24.83■■□□□ 1.56
SSBP3-216ENST00000610401 ESYT1Q9BSJ8 1104 aa24.83■■□□□ 1.56
SSBP3-216ENST00000610401 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.82■■□□□ 1.56
SSBP3-216ENST00000610401 CPS1P31327 1500 aa24.81■■□□□ 1.56
SSBP3-216ENST00000610401 OFD1O75665 1012 aa24.81■■□□□ 1.56
SSBP3-216ENST00000610401 MAP3K19Q56UN5 1328 aa24.81■■□□□ 1.56
SSBP3-216ENST00000610401 LRSAM1Q6UWE0 723 aa24.81■■□□□ 1.56
SSBP3-216ENST00000610401 ALKQ9UM73 1620 aa24.8■■□□□ 1.56
SSBP3-216ENST00000610401 SPG7Q9UQ90 795 aa24.8■■□□□ 1.56
SSBP3-216ENST00000610401 KNDC1Q76NI1 1749 aa24.8■■□□□ 1.56
SSBP3-216ENST00000610401 SURF6O75683 361 aaKnown RBP24.79■■□□□ 1.56
SSBP3-216ENST00000610401 FLIIQ13045 1269 aa24.79■■□□□ 1.56
SSBP3-216ENST00000610401 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.79■■□□□ 1.56
SSBP3-216ENST00000610401 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP24.79■■□□□ 1.56
SSBP3-216ENST00000610401 FIBPO43427 364 aa24.79■■□□□ 1.56
SSBP3-216ENST00000610401 USP25Q9UHP3 1055 aa24.79■■□□□ 1.56
SSBP3-216ENST00000610401 MCCP23508 829 aa24.78■■□□□ 1.56
SSBP3-216ENST00000610401 PHAXQ9H814 394 aaKnown RBP24.78■■□□□ 1.56
SSBP3-216ENST00000610401 TPM2P07951 284 aa24.78■■□□□ 1.56
SSBP3-216ENST00000610401 TTC21BQ7Z4L5 1316 aa24.77■■□□□ 1.56
SSBP3-216ENST00000610401 CHMLP26374 656 aa24.77■■□□□ 1.56
SSBP3-216ENST00000610401 USP48Q86UV5 1035 aa24.77■■□□□ 1.56
SSBP3-216ENST00000610401 CWC27Q6UX04 472 aaKnown RBP24.77■■□□□ 1.56
SSBP3-216ENST00000610401 NGDNQ8NEJ9 315 aaKnown RBP24.77■■□□□ 1.56
SSBP3-216ENST00000610401 CNPY2Q9Y2B0 182 aa24.77■■□□□ 1.56
SSBP3-216ENST00000610401 RGS12O14924 1447 aa24.76■■□□□ 1.55
SSBP3-216ENST00000610401 EDC4Q6P2E9 1401 aaKnown RBP24.76■■□□□ 1.55
SSBP3-216ENST00000610401 CLEC17AQ6ZS10 378 aa24.76■■□□□ 1.55
SSBP3-216ENST00000610401 RBM33Q96EV2 1170 aaKnown RBP24.76■■□□□ 1.55
SSBP3-216ENST00000610401 NOL7Q9UMY1 257 aaKnown RBP24.75■■□□□ 1.55
SSBP3-216ENST00000610401 TTC12Q9H892 705 aaPredicted RBP24.75■■□□□ 1.55
SSBP3-216ENST00000610401 OS9Q13438 667 aaPredicted RBP24.75■■□□□ 1.55
SSBP3-216ENST00000610401 PRDM10Q9NQV6 1147 aa24.75■■□□□ 1.55
SSBP3-216ENST00000610401 TSPY26PQ9H489 355 aa24.74■■□□□ 1.55
SSBP3-216ENST00000610401 PTPRCP08575 1304 aa24.74■■□□□ 1.55
SSBP3-216ENST00000610401 HCLS1P14317 486 aaPredicted RBP24.73■■□□□ 1.55
SSBP3-216ENST00000610401 ZKSCAN5Q9Y2L8 839 aa24.73■■□□□ 1.55
SSBP3-216ENST00000610401 CCT4P50991 539 aaKnown RBP24.73■■□□□ 1.55
SSBP3-216ENST00000610401 EYA1Q99502 592 aa24.73■■□□□ 1.55
SSBP3-216ENST00000610401 UBTFL1P0CB47 393 aaPredicted RBP24.71■■□□□ 1.55
SSBP3-216ENST00000610401 HAP1P54257 671 aaPredicted RBP24.71■■□□□ 1.55
SSBP3-216ENST00000610401 BRD1O95696 1058 aa24.71■■□□□ 1.55
SSBP3-216ENST00000610401 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.7■■□□□ 1.542e-6■■■□□ 15.4
SSBP3-216ENST00000610401 TCEANC2Q96MN5 208 aa24.7■■□□□ 1.54
SSBP3-216ENST00000610401 DIP2CQ9Y2E4 1556 aa24.69■■□□□ 1.54
SSBP3-216ENST00000610401 SRGAP3O43295 1099 aa24.69■■□□□ 1.54
SSBP3-216ENST00000610401 SPC24Q8NBT2 197 aa24.69■■□□□ 1.54
SSBP3-216ENST00000610401 NLRP6P59044 892 aa24.69■■□□□ 1.54
SSBP3-216ENST00000610401 SRCIN1Q9C0H9 1055 aa24.69■■□□□ 1.54
SSBP3-216ENST00000610401 GIMAP6Q6P9H5 292 aa24.68■■□□□ 1.54
SSBP3-216ENST00000610401 PPP1R42Q7Z4L9 355 aa24.68■■□□□ 1.54
SSBP3-216ENST00000610401 CEBPAP49715 358 aaPredicted RBP24.68■■□□□ 1.54
SSBP3-216ENST00000610401 RASEFQ8IZ41 740 aa24.68■■□□□ 1.54
SSBP3-216ENST00000610401 FERMT3Q86UX7 667 aa24.68■■□□□ 1.54
SSBP3-216ENST00000610401 CPSF1Q10570 1443 aaKnown RBP24.67■■□□□ 1.54
SSBP3-216ENST00000610401 VPS37CA5D8V6 355 aaPredicted RBP24.67■■□□□ 1.54
SSBP3-216ENST00000610401 TMEM131LA2VDJ0 1609 aa24.67■■□□□ 1.54
SSBP3-216ENST00000610401 FAM173BQ6P4H8 233 aa24.67■■□□□ 1.54
SSBP3-216ENST00000610401 PDLIM2Q96JY6 352 aa24.67■■□□□ 1.54
SSBP3-216ENST00000610401 PDCL3Q9H2J4 239 aa24.67■■□□□ 1.54
SSBP3-216ENST00000610401 HDGFL1Q5TGJ6 251 aa24.66■■□□□ 1.54
SSBP3-216ENST00000610401 CCDC83Q8IWF9 413 aa24.66■■□□□ 1.54
SSBP3-216ENST00000610401 CDK12Q9NYV4 1490 aaPredicted RBP24.66■■□□□ 1.54
SSBP3-216ENST00000610401 MBD3O95983 291 aa24.66■■□□□ 1.54
SSBP3-216ENST00000610401 NBPF7P0C2Y1 421 aaPredicted RBP24.66■■□□□ 1.54
SSBP3-216ENST00000610401 USP44Q9H0E7 712 aa24.66■■□□□ 1.54
SSBP3-216ENST00000610401 CCDC39Q9UFE4 941 aa24.66■■□□□ 1.54
SSBP3-216ENST00000610401 DLG5Q8TDM6 1919 aa24.66■■□□□ 1.54
SSBP3-216ENST00000610401 CCDC30Q5VVM6 783 aa24.65■■□□□ 1.54
SSBP3-216ENST00000610401 NECAB1Q8N987 351 aa24.65■■□□□ 1.54
SSBP3-216ENST00000610401 ATP7BP35670 1465 aa24.65■■□□□ 1.54
SSBP3-216ENST00000610401 GNAI3P08754 354 aa24.64■■□□□ 1.54
SSBP3-216ENST00000610401 ATP8B2P98198 1209 aa24.64■■□□□ 1.54
SSBP3-216ENST00000610401 KIF20BQ96Q89 1820 aa24.64■■□□□ 1.54
SSBP3-216ENST00000610401 LARGE1O95461 756 aa24.64■■□□□ 1.54
SSBP3-216ENST00000610401 CASTP20810 708 aaKnown RBP24.64■■□□□ 1.54
SSBP3-216ENST00000610401 IBTKQ9P2D0 1353 aaPredicted RBP24.64■■□□□ 1.53
SSBP3-216ENST00000610401 ARHGAP31Q2M1Z3 1444 aa24.64■■□□□ 1.53
SSBP3-216ENST00000610401 AK2P54819 239 aa24.64■■□□□ 1.53
SSBP3-216ENST00000610401 CCDC9Q9Y3X0 531 aaKnown RBP24.63■■□□□ 1.53
SSBP3-216ENST00000610401 ROBO2Q9HCK4 1378 aa24.63■■□□□ 1.53
SSBP3-216ENST00000610401 CAMK4Q16566 473 aa24.62■■□□□ 1.53
SSBP3-216ENST00000610401 KCNJ4P48050 445 aa24.62■■□□□ 1.53
SSBP3-216ENST00000610401 AATKQ6ZMQ8 1374 aa24.62■■□□□ 1.53
SSBP3-216ENST00000610401 ADCY5O95622 1261 aa24.62■■□□□ 1.53
SSBP3-216ENST00000610401 TAF7Q15545 349 aaPredicted RBP24.62■■□□□ 1.53
SSBP3-216ENST00000610401 PA2G4Q9UQ80 394 aaKnown RBP24.62■■□□□ 1.53
SSBP3-216ENST00000610401 IL17REQ8NFR9 667 aa24.61■■□□□ 1.53
SSBP3-216ENST00000610401 KCNQ3O43525 872 aa24.61■■□□□ 1.53
SSBP3-216ENST00000610401 DNM1Q05193 864 aaKnown RBP24.6■■□□□ 1.53
SSBP3-216ENST00000610401 COL9A3Q14050 684 aaPredicted RBP24.6■■□□□ 1.53
SSBP3-216ENST00000610401 SYAP1Q96A49 352 aaPredicted RBP24.6■■□□□ 1.53
SSBP3-216ENST00000610401 SMC3Q9UQE7 1217 aa24.6■■□□□ 1.53
SSBP3-216ENST00000610401 SOS1Q07889 1333 aaPredicted RBP24.6■■□□□ 1.53
SSBP3-216ENST00000610401 PPFIA3O75145 1194 aa24.6■■□□□ 1.53
SSBP3-216ENST00000610401 PRPF40BQ6NWY9 871 aaKnown RBP24.6■■□□□ 1.53
SSBP3-216ENST00000610401 OSBPL3Q9H4L5 887 aa24.6■■□□□ 1.53
SSBP3-216ENST00000610401 A2ML1A8K2U0 1454 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms