RNA–Protein interactions for RNA: ENST00000607055.1

NECAB3-221, Transcript of N-terminal EF-hand calcium binding protein 3, humanhuman

TSL 4

Gene NECAB3, Length 554 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAB3-221ENST00000607055 WWC1Q8IX03 1113 aa28.33■■■□□ 2.13
NECAB3-221ENST00000607055 ITGB4P16144 1822 aa28.33■■■□□ 2.13
NECAB3-221ENST00000607055 CALD1Q05682 793 aaKnown RBP28.28■■■□□ 2.12
NECAB3-221ENST00000607055 TAF7Q15545 349 aaPredicted RBP28.28■■■□□ 2.12
NECAB3-221ENST00000607055 BTAF1O14981 1849 aa28.27■■■□□ 2.12
NECAB3-221ENST00000607055 SIPA1L3O60292 1781 aaPredicted RBP28.27■■■□□ 2.12
NECAB3-221ENST00000607055 BTBD11A6QL63 1104 aa28.26■■■□□ 2.11
NECAB3-221ENST00000607055 LAS1LQ9Y4W2 734 aaKnown RBP28.26■■■□□ 2.11
NECAB3-221ENST00000607055 MIS18AQ9NYP9 233 aa28.25■■■□□ 2.11
NECAB3-221ENST00000607055 ASAP1Q9ULH1 1129 aa28.25■■■□□ 2.11
NECAB3-221ENST00000607055 APBA3O96018 575 aa28.24■■■□□ 2.11
NECAB3-221ENST00000607055 SLC39A6Q13433 755 aa28.24■■■□□ 2.11
NECAB3-221ENST00000607055 SF3B2Q13435 895 aaKnown RBP28.24■■■□□ 2.11
NECAB3-221ENST00000607055 WDR63Q8IWG1 891 aa28.24■■■□□ 2.11
NECAB3-221ENST00000607055 ATG3Q9NT62 314 aa28.24■■■□□ 2.11
NECAB3-221ENST00000607055 TNS1Q9HBL0 1735 aaKnown RBP28.23■■■□□ 2.11
NECAB3-221ENST00000607055 ZNF521Q96K83 1311 aa28.23■■■□□ 2.11
NECAB3-221ENST00000607055 EP400Q96L91 3159 aa28.22■■■□□ 2.11
NECAB3-221ENST00000607055 YTHDC1Q96MU7 727 aaKnown RBP28.22■■■□□ 2.11
NECAB3-221ENST00000607055 SMARCC1Q92922 1105 aaPredicted RBP28.21■■■□□ 2.11
NECAB3-221ENST00000607055 TSPYL4Q9UJ04 414 aa28.21■■■□□ 2.11
NECAB3-221ENST00000607055 TTC5Q8N0Z6 440 aa28.2■■■□□ 2.1
NECAB3-221ENST00000607055 UPF1Q92900 1129 aaKnown RBP eCLIP28.2■■■□□ 2.1
NECAB3-221ENST00000607055 CFAP44Q96MT7 982 aa28.2■■■□□ 2.1
NECAB3-221ENST00000607055 IFT57Q9NWB7 429 aa28.2■■■□□ 2.1
NECAB3-221ENST00000607055 PALLDQ8WX93 1383 aa28.2■■■□□ 2.1
NECAB3-221ENST00000607055 IL16Q14005 1332 aa28.19■■■□□ 2.1
NECAB3-221ENST00000607055 CHL1O00533 1208 aa28.19■■■□□ 2.1
NECAB3-221ENST00000607055 KCNQ3O43525 872 aa28.19■■■□□ 2.1
NECAB3-221ENST00000607055 GNAI1P63096 354 aa28.19■■■□□ 2.1
NECAB3-221ENST00000607055 ZNF790Q6PG37 636 aa28.19■■■□□ 2.1
NECAB3-221ENST00000607055 CCDC125Q86Z20 511 aa28.19■■■□□ 2.1
NECAB3-221ENST00000607055 PAPPAQ13219 1627 aa28.18■■■□□ 2.1
NECAB3-221ENST00000607055 PTCD1O75127 700 aaKnown RBP28.17■■■□□ 2.1
NECAB3-221ENST00000607055 ZNF853P0CG23 659 aa28.17■■■□□ 2.1
NECAB3-221ENST00000607055 BABAM1Q9NWV8 329 aa28.17■■■□□ 2.1
NECAB3-221ENST00000607055 GOLGA2Q08379 1002 aa28.16■■■□□ 2.1
NECAB3-221ENST00000607055 RBM42Q9BTD8 480 aaKnown RBP28.16■■■□□ 2.1
NECAB3-221ENST00000607055 ZBED9Q6R2W3 1325 aa28.16■■■□□ 2.1
NECAB3-221ENST00000607055 BAG6P46379 1132 aa28.15■■■□□ 2.1
NECAB3-221ENST00000607055 SPINK5Q9NQ38 1064 aaPredicted RBP28.15■■■□□ 2.1
NECAB3-221ENST00000607055 MBIPQ9NS73 344 aa28.15■■■□□ 2.1
NECAB3-221ENST00000607055 KDM3BQ7LBC6 1761 aa28.14■■■□□ 2.1
NECAB3-221ENST00000607055 PLSCR1O15162 318 aa28.14■■■□□ 2.1
NECAB3-221ENST00000607055 TSR2Q969E8 191 aaKnown RBP28.14■■■□□ 2.1
NECAB3-221ENST00000607055 KCPQ6ZWJ8 1503 aa28.13■■■□□ 2.09
NECAB3-221ENST00000607055 EN1Q05925 392 aaPredicted RBP28.13■■■□□ 2.09
NECAB3-221ENST00000607055 DEFB132Q7Z7B7 95 aa28.13■■■□□ 2.09
NECAB3-221ENST00000607055 CDCA7LQ96GN5 454 aa28.12■■■□□ 2.09
NECAB3-221ENST00000607055 ZNF496Q96IT1 587 aaPredicted RBP28.12■■■□□ 2.09
NECAB3-221ENST00000607055 LOC102724428A0A0B4J2F2 783 aa28.11■■■□□ 2.09
NECAB3-221ENST00000607055 SIK1P57059 783 aa28.11■■■□□ 2.09
NECAB3-221ENST00000607055 FMNL2Q96PY5 1086 aa28.11■■■□□ 2.09
NECAB3-221ENST00000607055 MYH16Q9H6N6 1097 aa28.11■■■□□ 2.09
NECAB3-221ENST00000607055 UBR2Q8IWV8 1755 aa28.1■■■□□ 2.09
NECAB3-221ENST00000607055 EIF4A1P60842 406 aaKnown RBP28.1■■■□□ 2.09
NECAB3-221ENST00000607055 E9PSI1 815 aa28.09■■■□□ 2.09
NECAB3-221ENST00000607055 EZH2Q15910 746 aaKnown RBP28.09■■■□□ 2.09
NECAB3-221ENST00000607055 CCNL1Q9UK58 526 aaPredicted RBP28.09■■■□□ 2.09
NECAB3-221ENST00000607055 FANCIQ9NVI1 1328 aa28.09■■■□□ 2.09
NECAB3-221ENST00000607055 LY75O60449 1722 aa28.09■■■□□ 2.09
NECAB3-221ENST00000607055 KCNQ4P56696 695 aa28.08■■■□□ 2.09
NECAB3-221ENST00000607055 SLFN5Q08AF3 891 aa28.08■■■□□ 2.09
NECAB3-221ENST00000607055 TXNRD1Q16881 649 aa28.08■■■□□ 2.09
NECAB3-221ENST00000607055 SLC4A9Q96Q91 983 aa28.08■■■□□ 2.09
NECAB3-221ENST00000607055 CAMKK2Q96RR4 588 aa28.08■■■□□ 2.09
NECAB3-221ENST00000607055 ATP6V1AP38606 617 aa28.07■■■□□ 2.08
NECAB3-221ENST00000607055 HEG1Q9ULI3 1381 aa28.07■■■□□ 2.08
NECAB3-221ENST00000607055 RGPD3A6NKT7 1758 aaPredicted RBP28.06■■■□□ 2.08
NECAB3-221ENST00000607055 RGPD4Q7Z3J3 1758 aa28.06■■■□□ 2.08
NECAB3-221ENST00000607055 PROM2Q8N271 834 aa28.06■■■□□ 2.08
NECAB3-221ENST00000607055 KRT24Q2M2I5 525 aa28.05■■■□□ 2.08
NECAB3-221ENST00000607055 SLC27A3Q5K4L6 730 aa28.05■■■□□ 2.08
NECAB3-221ENST00000607055 VSIG10Q8N0Z9 540 aa28.04■■■□□ 2.08
NECAB3-221ENST00000607055 LRRC4BQ9NT99 713 aa28.04■■■□□ 2.08
NECAB3-221ENST00000607055 SNRPA1P09661 255 aaKnown RBP28.03■■■□□ 2.08
NECAB3-221ENST00000607055 ITPK1Q13572 414 aa28.03■■■□□ 2.08
NECAB3-221ENST00000607055 DNAJC10Q8IXB1 793 aa28.03■■■□□ 2.08
NECAB3-221ENST00000607055 PRAMEF22A3QJZ6 481 aa28.02■■■□□ 2.08
NECAB3-221ENST00000607055 GIGYF1O75420 1035 aaPredicted RBP28.01■■■□□ 2.07
NECAB3-221ENST00000607055 ELL2O00472 640 aaPredicted RBP28■■■□□ 2.07
NECAB3-221ENST00000607055 EXOSC9Q06265 439 aaKnown RBP28■■■□□ 2.07
NECAB3-221ENST00000607055 TRMT2AQ8IZ69 625 aaKnown RBP28■■■□□ 2.07
NECAB3-221ENST00000607055 C8orf58Q8NAV2 365 aa28■■■□□ 2.07
NECAB3-221ENST00000607055 TJP1Q07157 1748 aa28■■■□□ 2.07
NECAB3-221ENST00000607055 DUSP27Q5VZP5 1158 aa27.99■■■□□ 2.07
NECAB3-221ENST00000607055 ZNF831Q5JPB2 1677 aa27.99■■■□□ 2.07
NECAB3-221ENST00000607055 LINC00116Q8NCU8 138 aa27.98■■■□□ 2.07
NECAB3-221ENST00000607055 TEX13AQ9BXU3 409 aaPredicted RBP27.98■■■□□ 2.07
NECAB3-221ENST00000607055 USP16Q9Y5T5 823 aa27.98■■■□□ 2.07
NECAB3-221ENST00000607055 C5P01031 1676 aa27.97■■■□□ 2.07
NECAB3-221ENST00000607055 TSPYL6Q8N831 410 aa27.97■■■□□ 2.07
NECAB3-221ENST00000607055 RREB1Q92766 1687 aa27.97■■■□□ 2.07
NECAB3-221ENST00000607055 CICQ96RK0 1608 aaPredicted RBP27.96■■■□□ 2.07
NECAB3-221ENST00000607055 STARD3NLO95772 234 aa27.95■■■□□ 2.06
NECAB3-221ENST00000607055 CYP19A1P11511 503 aaPredicted RBP27.95■■■□□ 2.06
NECAB3-221ENST00000607055 HOXB7P09629 217 aa27.94■■■□□ 2.06
NECAB3-221ENST00000607055 EIF2S2P20042 333 aaKnown RBP27.94■■■□□ 2.06
NECAB3-221ENST00000607055 TWISTNBQ3B726 338 aaPredicted RBP27.94■■■□□ 2.06
NECAB3-221ENST00000607055 TAF1LQ8IZX4 1826 aa27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms