RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 SLC52A2Q9HAB3 445 aa13.18□□□□□ -0.3
UPF1-213ENST00000601981 LY75O60449 1722 aa13.18□□□□□ -0.3
UPF1-213ENST00000601981 PLSCR1O15162 318 aa13.17□□□□□ -0.3
UPF1-213ENST00000601981 NEUROD2Q15784 382 aa13.17□□□□□ -0.3
UPF1-213ENST00000601981 APAF1O14727 1248 aa13.16□□□□□ -0.3
UPF1-213ENST00000601981 CALD1Q05682 793 aaKnown RBP13.16□□□□□ -0.3
UPF1-213ENST00000601981 NGEFQ8N5V2 710 aa13.16□□□□□ -0.3
UPF1-213ENST00000601981 PIGBQ92521 554 aa13.16□□□□□ -0.3
UPF1-213ENST00000601981 LGR6Q9HBX8 967 aa13.16□□□□□ -0.3
UPF1-213ENST00000601981 CEMIPQ8WUJ3 1361 aa13.16□□□□□ -0.3
UPF1-213ENST00000601981 RREB1Q92766 1687 aa13.15□□□□□ -0.3
UPF1-213ENST00000601981 PAPPAQ13219 1627 aa13.15□□□□□ -0.3
UPF1-213ENST00000601981 MCM10Q7L590 875 aa13.15□□□□□ -0.3
UPF1-213ENST00000601981 NFATC2IPQ8NCF5 419 aa13.15□□□□□ -0.3
UPF1-213ENST00000601981 IL17REQ8NFR9 667 aa13.15□□□□□ -0.3
UPF1-213ENST00000601981 RRP7AQ9Y3A4 280 aaKnown RBP13.15□□□□□ -0.3
UPF1-213ENST00000601981 EN1Q05925 392 aaPredicted RBP13.14□□□□□ -0.31
UPF1-213ENST00000601981 NCBP3Q53F19 620 aaKnown RBP13.14□□□□□ -0.31
UPF1-213ENST00000601981 TTC5Q8N0Z6 440 aa13.14□□□□□ -0.31
UPF1-213ENST00000601981 PALLDQ8WX93 1383 aa13.14□□□□□ -0.31
UPF1-213ENST00000601981 UBR2Q8IWV8 1755 aa13.13□□□□□ -0.31
UPF1-213ENST00000601981 ZNF831Q5JPB2 1677 aa13.13□□□□□ -0.31
UPF1-213ENST00000601981 SLC27A3Q5K4L6 730 aa13.13□□□□□ -0.31
UPF1-213ENST00000601981 PTF1AQ7RTS3 328 aa13.13□□□□□ -0.31
UPF1-213ENST00000601981 DEFB132Q7Z7B7 95 aa13.13□□□□□ -0.31
UPF1-213ENST00000601981 TAF1LQ8IZX4 1826 aa13.12□□□□□ -0.31
UPF1-213ENST00000601981 BTBD11A6QL63 1104 aa13.12□□□□□ -0.31
UPF1-213ENST00000601981 DCTN1Q14203 1278 aa13.12□□□□□ -0.31
UPF1-213ENST00000601981 TAF7Q15545 349 aaPredicted RBP13.12□□□□□ -0.31
UPF1-213ENST00000601981 NUP188Q5SRE5 1749 aa13.12□□□□□ -0.31
UPF1-213ENST00000601981 KDM3BQ7LBC6 1761 aa13.12□□□□□ -0.31
UPF1-213ENST00000601981 EZH2Q15910 746 aaKnown RBP13.11□□□□□ -0.31
UPF1-213ENST00000601981 CCDC27Q2M243 656 aa13.11□□□□□ -0.31
UPF1-213ENST00000601981 CAMKK2Q96RR4 588 aa13.11□□□□□ -0.31
UPF1-213ENST00000601981 ATG3Q9NT62 314 aa13.11□□□□□ -0.31
UPF1-213ENST00000601981 CCNL1Q9UK58 526 aaPredicted RBP13.11□□□□□ -0.31
UPF1-213ENST00000601981 ASAP1Q9ULH1 1129 aa13.11□□□□□ -0.31
UPF1-213ENST00000601981 C5P01031 1676 aa13.11□□□□□ -0.31
UPF1-213ENST00000601981 NEFLP07196 543 aa13.1□□□□□ -0.31
UPF1-213ENST00000601981 TXNRD1Q16881 649 aa13.1□□□□□ -0.31
UPF1-213ENST00000601981 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
UPF1-213ENST00000601981 BABAM1Q9NWV8 329 aa13.1□□□□□ -0.31
UPF1-213ENST00000601981 TRIM35Q9UPQ4 493 aa13.1□□□□□ -0.31
UPF1-213ENST00000601981 LOC102724428A0A0B4J2F2 783 aa13.09□□□□□ -0.31
UPF1-213ENST00000601981 SIK1P57059 783 aa13.09□□□□□ -0.31
UPF1-213ENST00000601981 NBPF14Q5TI25 921 aa13.09□□□□□ -0.31
UPF1-213ENST00000601981 ZNF790Q6PG37 636 aa13.09□□□□□ -0.31
UPF1-213ENST00000601981 THUMPD2Q9BTF0 503 aaKnown RBP13.09□□□□□ -0.31
UPF1-213ENST00000601981 CICQ96RK0 1608 aaPredicted RBP13.09□□□□□ -0.31
UPF1-213ENST00000601981 ZNF521Q96K83 1311 aa13.09□□□□□ -0.31
UPF1-213ENST00000601981 PTCD1O75127 700 aaKnown RBP13.08□□□□□ -0.32
UPF1-213ENST00000601981 ATP6V1AP38606 617 aa13.08□□□□□ -0.32
UPF1-213ENST00000601981 FMNL2Q96PY5 1086 aa13.08□□□□□ -0.32
UPF1-213ENST00000601981 TSPYL4Q9UJ04 414 aa13.08□□□□□ -0.32
UPF1-213ENST00000601981 COL5A3P25940 1745 aaPredicted RBP13.08□□□□□ -0.32
UPF1-213ENST00000601981 GNAI1P63096 354 aa13.07□□□□□ -0.32
UPF1-213ENST00000601981 SLC39A6Q13433 755 aa13.07□□□□□ -0.32
UPF1-213ENST00000601981 SALL2Q9Y467 1007 aaPredicted RBP13.07□□□□□ -0.32
UPF1-213ENST00000601981 LAS1LQ9Y4W2 734 aaKnown RBP13.07□□□□□ -0.32
UPF1-213ENST00000601981 KCPQ6ZWJ8 1503 aa13.07□□□□□ -0.32
UPF1-213ENST00000601981 LAMB4A4D0S4 1761 aa13.07□□□□□ -0.32
UPF1-213ENST00000601981 TJP1Q07157 1748 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 SENP3-EIF4A1A0A087X0R7 540 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 WDR63Q8IWG1 891 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 WWC1Q8IX03 1113 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 VSIG10Q8N0Z9 540 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 CFAP44Q96MT7 982 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 TEX13AQ9BXU3 409 aaPredicted RBP13.06□□□□□ -0.32
UPF1-213ENST00000601981 IFT57Q9NWB7 429 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 STK32BQ9NY57 414 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 SUPT16HQ9Y5B9 1047 aaKnown RBP13.06□□□□□ -0.32
UPF1-213ENST00000601981 IL16Q14005 1332 aa13.06□□□□□ -0.32
UPF1-213ENST00000601981 C4BP0C0L5 1744 aa13.05□□□□□ -0.32
UPF1-213ENST00000601981 QSER1Q2KHR3 1735 aa13.05□□□□□ -0.32
UPF1-213ENST00000601981 HEG1Q9ULI3 1381 aa13.05□□□□□ -0.32
UPF1-213ENST00000601981 PROM2Q8N271 834 aa13.04□□□□□ -0.32
UPF1-213ENST00000601981 CHL1O00533 1208 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 STARD3NLO95772 234 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 SNRPA1P09661 255 aaKnown RBP13.03□□□□□ -0.32
UPF1-213ENST00000601981 GOLGA2Q08379 1002 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 FKBP8Q14318 412 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 ZNF496Q96IT1 587 aaPredicted RBP13.03□□□□□ -0.32
UPF1-213ENST00000601981 AK7Q96M32 723 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 MYH16Q9H6N6 1097 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 LRRC4BQ9NT99 713 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 MIS18AQ9NYP9 233 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 RNF123Q5XPI4 1314 aa13.03□□□□□ -0.32
UPF1-213ENST00000601981 TUBGCP6Q96RT7 1819 aa13.02□□□□□ -0.32
UPF1-213ENST00000601981 UBR3Q6ZT12 1888 aa13.02□□□□□ -0.32
UPF1-213ENST00000601981 CHMP4AQ9BY43 222 aa13.02□□□□□ -0.33
UPF1-213ENST00000601981 MYH14Q7Z406 1995 aaKnown RBP13.01□□□□□ -0.33
UPF1-213ENST00000601981 PSDA5PKW4 1024 aaPredicted RBP13.01□□□□□ -0.33
UPF1-213ENST00000601981 KCNQ4P56696 695 aa13.01□□□□□ -0.33
UPF1-213ENST00000601981 EIF4A1P60842 406 aaKnown RBP13.01□□□□□ -0.33
UPF1-213ENST00000601981 ERICH6BQ5W0A0 696 aa13.01□□□□□ -0.33
UPF1-213ENST00000601981 NPM2Q86SE8 214 aaKnown RBP13.01□□□□□ -0.33
UPF1-213ENST00000601981 CDCA7LQ96GN5 454 aa13.01□□□□□ -0.33
UPF1-213ENST00000601981 MBIPQ9NS73 344 aa13.01□□□□□ -0.33
UPF1-213ENST00000601981 CNTNAP4Q9C0A0 1308 aa13.01□□□□□ -0.33
UPF1-213ENST00000601981 LRP5O75197 1615 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms