RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 SLC15A2Q16348 729 aa26.63■■□□□ 1.85
SSBP4-210ENST00000601444 CCDC146Q8IYE0 955 aa26.63■■□□□ 1.85
SSBP4-210ENST00000601444 STK32BQ9NY57 414 aa26.63■■□□□ 1.85
SSBP4-210ENST00000601444 LOC102724428A0A0B4J2F2 783 aa26.62■■□□□ 1.85
SSBP4-210ENST00000601444 NEFMP07197 916 aa26.62■■□□□ 1.85
SSBP4-210ENST00000601444 SIK1P57059 783 aa26.62■■□□□ 1.85
SSBP4-210ENST00000601444 DCTN1Q14203 1278 aa26.62■■□□□ 1.85
SSBP4-210ENST00000601444 PNNQ9H307 717 aaKnown RBP26.62■■□□□ 1.85
SSBP4-210ENST00000601444 MRC1P22897 1456 aa26.62■■□□□ 1.85
SSBP4-210ENST00000601444 MCM10Q7L590 875 aa26.61■■□□□ 1.85
SSBP4-210ENST00000601444 AKT1S1Q96B36 256 aa26.61■■□□□ 1.85
SSBP4-210ENST00000601444 SLC4A9Q96Q91 983 aa26.61■■□□□ 1.85
SSBP4-210ENST00000601444 PDGFDQ9GZP0 370 aaPredicted RBP26.61■■□□□ 1.85
SSBP4-210ENST00000601444 SLC39A6Q13433 755 aa26.6■■□□□ 1.85
SSBP4-210ENST00000601444 RBM42Q9BTD8 480 aaKnown RBP26.6■■□□□ 1.85
SSBP4-210ENST00000601444 MAPK8IP3Q9UPT6 1336 aa26.6■■□□□ 1.85
SSBP4-210ENST00000601444 VIRMAQ69YN4 1812 aaKnown RBP26.6■■□□□ 1.85
SSBP4-210ENST00000601444 ITPK1Q13572 414 aa26.59■■□□□ 1.85
SSBP4-210ENST00000601444 NFE2L2Q16236 605 aa26.59■■□□□ 1.85
SSBP4-210ENST00000601444 CEMIPQ8WUJ3 1361 aa26.58■■□□□ 1.85
SSBP4-210ENST00000601444 PTCD1O75127 700 aaKnown RBP26.58■■□□□ 1.85
SSBP4-210ENST00000601444 ATP6V1AP38606 617 aa26.58■■□□□ 1.85
SSBP4-210ENST00000601444 RTF1Q92541 710 aaKnown RBP26.58■■□□□ 1.85
SSBP4-210ENST00000601444 TEFQ10587 303 aa26.57■■□□□ 1.84
SSBP4-210ENST00000601444 LINC00116Q8NCU8 138 aa26.56■■□□□ 1.84
SSBP4-210ENST00000601444 HTATSF1O43719 755 aaKnown RBP26.55■■□□□ 1.84
SSBP4-210ENST00000601444 RUNDC1Q96C34 613 aa26.55■■□□□ 1.84
SSBP4-210ENST00000601444 MRS2Q9HD23 443 aa26.55■■□□□ 1.84
SSBP4-210ENST00000601444 RRP7AQ9Y3A4 280 aaKnown RBP26.54■■□□□ 1.84
SSBP4-210ENST00000601444 C5P01031 1676 aa26.54■■□□□ 1.84
SSBP4-210ENST00000601444 TMPOP42166 694 aaKnown RBP26.53■■□□□ 1.84
SSBP4-210ENST00000601444 THUMPD2Q9BTF0 503 aaKnown RBP26.53■■□□□ 1.84
SSBP4-210ENST00000601444 TFCP2L1Q9NZI6 479 aa26.53■■□□□ 1.84
SSBP4-210ENST00000601444 RIPK4P57078 832 aa26.52■■□□□ 1.84
SSBP4-210ENST00000601444 PNISRQ8TF01 805 aaKnown RBP26.52■■□□□ 1.84
SSBP4-210ENST00000601444 TAF1LQ8IZX4 1826 aa26.51■■□□□ 1.83
SSBP4-210ENST00000601444 SMIM5Q71RC9 77 aa26.51■■□□□ 1.83
SSBP4-210ENST00000601444 DLG5Q8TDM6 1919 aa26.51■■□□□ 1.83
SSBP4-210ENST00000601444 PNPLA7Q6ZV29 1317 aa26.5■■□□□ 1.83
SSBP4-210ENST00000601444 KCNQ3O43525 872 aa26.5■■□□□ 1.83
SSBP4-210ENST00000601444 NEUROD2Q15784 382 aa26.5■■□□□ 1.83
SSBP4-210ENST00000601444 AMIGO3Q86WK7 504 aa26.5■■□□□ 1.83
SSBP4-210ENST00000601444 SIPA1L3O60292 1781 aaPredicted RBP26.5■■□□□ 1.83
SSBP4-210ENST00000601444 SRCAPQ6ZRS2 3230 aa26.5■■□□□ 1.83
SSBP4-210ENST00000601444 BTBD11A6QL63 1104 aa26.49■■□□□ 1.83
SSBP4-210ENST00000601444 KCPQ6ZWJ8 1503 aa26.49■■□□□ 1.83
SSBP4-210ENST00000601444 C4BP0C0L5 1744 aa26.48■■□□□ 1.83
SSBP4-210ENST00000601444 ZNF790Q6PG37 636 aa26.48■■□□□ 1.83
SSBP4-210ENST00000601444 CASZ1Q86V15 1759 aa26.48■■□□□ 1.83
SSBP4-210ENST00000601444 AK7Q96M32 723 aa26.47■■□□□ 1.83
SSBP4-210ENST00000601444 MIS18AQ9NYP9 233 aa26.47■■□□□ 1.83
SSBP4-210ENST00000601444 ZBTB7AO95365 584 aa26.46■■□□□ 1.83
SSBP4-210ENST00000601444 TTC5Q8N0Z6 440 aa26.46■■□□□ 1.83
SSBP4-210ENST00000601444 TUBGCP6Q96RT7 1819 aa26.46■■□□□ 1.83
SSBP4-210ENST00000601444 TAF7Q15545 349 aaPredicted RBP26.45■■□□□ 1.82
SSBP4-210ENST00000601444 DNAJC10Q8IXB1 793 aa26.45■■□□□ 1.82
SSBP4-210ENST00000601444 ZNF496Q96IT1 587 aaPredicted RBP26.45■■□□□ 1.82
SSBP4-210ENST00000601444 ZNF831Q5JPB2 1677 aa26.44■■□□□ 1.82
SSBP4-210ENST00000601444 APAF1O14727 1248 aa26.44■■□□□ 1.82
SSBP4-210ENST00000601444 COL23A1Q86Y22 540 aaPredicted RBP26.44■■□□□ 1.82
SSBP4-210ENST00000601444 TRIM35Q9UPQ4 493 aa26.44■■□□□ 1.82
SSBP4-210ENST00000601444 SENP3-EIF4A1A0A087X0R7 540 aa26.43■■□□□ 1.82
SSBP4-210ENST00000601444 TJP1Q07157 1748 aa26.42■■□□□ 1.82
SSBP4-210ENST00000601444 GNPATO15228 680 aa26.42■■□□□ 1.82
SSBP4-210ENST00000601444 PHF14O94880 888 aa26.42■■□□□ 1.82
SSBP4-210ENST00000601444 HMGB2P26583 209 aaKnown RBP26.42■■□□□ 1.82
SSBP4-210ENST00000601444 ATF5Q9Y2D1 282 aaPredicted RBP26.42■■□□□ 1.82
SSBP4-210ENST00000601444 UBR2Q8IWV8 1755 aa26.41■■□□□ 1.82
SSBP4-210ENST00000601444 COL5A3P25940 1745 aaPredicted RBP26.41■■□□□ 1.82
SSBP4-210ENST00000601444 MSH5O43196 834 aa26.4■■□□□ 1.82
SSBP4-210ENST00000601444 CRKLP46109 303 aaKnown RBP26.4■■□□□ 1.82
SSBP4-210ENST00000601444 CNTNAP4Q9C0A0 1308 aa26.39■■□□□ 1.82
SSBP4-210ENST00000601444 QSER1Q2KHR3 1735 aa26.39■■□□□ 1.82
SSBP4-210ENST00000601444 HEG1Q9ULI3 1381 aa26.39■■□□□ 1.82
SSBP4-210ENST00000601444 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.39■■□□□ 1.82
SSBP4-210ENST00000601444 LMOD3Q0VAK6 560 aa26.39■■□□□ 1.82
SSBP4-210ENST00000601444 RC3H1Q5TC82 1133 aaKnown RBP26.39■■□□□ 1.82
SSBP4-210ENST00000601444 VSIG10Q8N0Z9 540 aa26.39■■□□□ 1.82
SSBP4-210ENST00000601444 CYP19A1P11511 503 aaPredicted RBP26.38■■□□□ 1.81
SSBP4-210ENST00000601444 INTS5Q6P9B9 1019 aaKnown RBP26.38■■□□□ 1.81
SSBP4-210ENST00000601444 FAM9BQ8IZU0 186 aa26.38■■□□□ 1.81
SSBP4-210ENST00000601444 FMNL2Q96PY5 1086 aa26.38■■□□□ 1.81
SSBP4-210ENST00000601444 SPON1Q9HCB6 807 aa26.38■■□□□ 1.81
SSBP4-210ENST00000601444 CICQ96RK0 1608 aaPredicted RBP26.37■■□□□ 1.81
SSBP4-210ENST00000601444 DIEXFQ68CQ4 756 aaKnown RBP26.37■■□□□ 1.81
SSBP4-210ENST00000601444 MTFR1LQ9H019 292 aa26.37■■□□□ 1.81
SSBP4-210ENST00000601444 UBR3Q6ZT12 1888 aa26.36■■□□□ 1.81
SSBP4-210ENST00000601444 PRAMEF22A3QJZ6 481 aa26.36■■□□□ 1.81
SSBP4-210ENST00000601444 SSFA2P28290 1259 aa26.36■■□□□ 1.81
SSBP4-210ENST00000601444 RPS6KA4O75676 772 aa26.35■■□□□ 1.81
SSBP4-210ENST00000601444 PTGER2P43116 358 aa26.35■■□□□ 1.81
SSBP4-210ENST00000601444 FLAD1Q8NFF5 587 aa26.35■■□□□ 1.81
SSBP4-210ENST00000601444 RTCBQ9Y3I0 505 aaKnown RBP26.35■■□□□ 1.81
SSBP4-210ENST00000601444 LRP5O75197 1615 aa26.35■■□□□ 1.81
SSBP4-210ENST00000601444 MYH14Q7Z406 1995 aaKnown RBP26.35■■□□□ 1.81
SSBP4-210ENST00000601444 SLC16A10Q8TF71 515 aa26.34■■□□□ 1.81
SSBP4-210ENST00000601444 CCDC87Q9NVE4 849 aa26.33■■□□□ 1.81
SSBP4-210ENST00000601444 TRAPPC3LQ5T215 181 aa26.32■■□□□ 1.8
SSBP4-210ENST00000601444 MSL1Q68DK7 614 aa26.32■■□□□ 1.8
SSBP4-210ENST00000601444 ZBTB1Q9Y2K1 713 aa26.32■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms