RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 MIS18AQ9NYP9 233 aa19.07■□□□□ 0.64
SHKBP1-211ENST00000595945 TSPYL6Q8N831 410 aa19.06■□□□□ 0.64
SHKBP1-211ENST00000595945 DDX54Q8TDD1 881 aaKnown RBP19.06■□□□□ 0.64
SHKBP1-211ENST00000595945 ERVV-2B6SEH9 535 aa19.05■□□□□ 0.64
SHKBP1-211ENST00000595945 VAMP4O75379 141 aa19.05■□□□□ 0.64
SHKBP1-211ENST00000595945 ZNF428Q96B54 188 aa19.05■□□□□ 0.64
SHKBP1-211ENST00000595945 TRPC5Q9UL62 973 aaPredicted RBP19.05■□□□□ 0.64
SHKBP1-211ENST00000595945 UBR2Q8IWV8 1755 aa19.05■□□□□ 0.64
SHKBP1-211ENST00000595945 DOT1LQ8TEK3 1739 aa19.05■□□□□ 0.64
SHKBP1-211ENST00000595945 RRP1P56182 461 aaKnown RBP19.04■□□□□ 0.64
SHKBP1-211ENST00000595945 DDB1Q16531 1140 aa19.04■□□□□ 0.64
SHKBP1-211ENST00000595945 GJD4Q96KN9 370 aaPredicted RBP19.04■□□□□ 0.64
SHKBP1-211ENST00000595945 FAM98CQ17RN3 349 aaKnown RBP19.03■□□□□ 0.64
SHKBP1-211ENST00000595945 TWISTNBQ3B726 338 aaPredicted RBP19.03■□□□□ 0.64
SHKBP1-211ENST00000595945 HEG1Q9ULI3 1381 aa19.03■□□□□ 0.64
SHKBP1-211ENST00000595945 BTBD11A6QL63 1104 aa19.02■□□□□ 0.64
SHKBP1-211ENST00000595945 ONECUT3O60422 494 aaPredicted RBP19.02■□□□□ 0.64
SHKBP1-211ENST00000595945 EIF4A1P60842 406 aaKnown RBP19.02■□□□□ 0.64
SHKBP1-211ENST00000595945 KRT24Q2M2I5 525 aa19.02■□□□□ 0.64
SHKBP1-211ENST00000595945 SOS1Q07889 1333 aaPredicted RBP19.01■□□□□ 0.63
SHKBP1-211ENST00000595945 KCNQ3O43525 872 aa19.01■□□□□ 0.63
SHKBP1-211ENST00000595945 BCAR3O75815 825 aa19.01■□□□□ 0.63
SHKBP1-211ENST00000595945 ALDH1L2Q3SY69 923 aa19.01■□□□□ 0.63
SHKBP1-211ENST00000595945 NFATC2IPQ8NCF5 419 aa19.01■□□□□ 0.63
SHKBP1-211ENST00000595945 BRPF1P55201 1214 aaPredicted RBP19■□□□□ 0.63
SHKBP1-211ENST00000595945 CABP4P57796 275 aa19■□□□□ 0.63
SHKBP1-211ENST00000595945 MARCH10Q8NA82 808 aaPredicted RBP19■□□□□ 0.63
SHKBP1-211ENST00000595945 SSH1Q8WYL5 1049 aa19■□□□□ 0.63
SHKBP1-211ENST00000595945 C5P01031 1676 aa18.99■□□□□ 0.63
SHKBP1-211ENST00000595945 QTRT2Q9H974 415 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-211ENST00000595945 BRWD3Q6RI45 1802 aa18.98■□□□□ 0.63
SHKBP1-211ENST00000595945 ELL2O00472 640 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-211ENST00000595945 GTF3C3Q9Y5Q9 886 aa18.98■□□□□ 0.63
SHKBP1-211ENST00000595945 HOXB7P09629 217 aa18.97■□□□□ 0.63
SHKBP1-211ENST00000595945 ZNF790Q6PG37 636 aa18.97■□□□□ 0.63
SHKBP1-211ENST00000595945 SBF2Q86WG5 1849 aa18.97■□□□□ 0.63
SHKBP1-211ENST00000595945 LAMB4A4D0S4 1761 aa18.96■□□□□ 0.63
SHKBP1-211ENST00000595945 KCPQ6ZWJ8 1503 aa18.96■□□□□ 0.63
SHKBP1-211ENST00000595945 ZNF772Q68DY9 489 aaPredicted RBP18.96■□□□□ 0.63
SHKBP1-211ENST00000595945 BCL9O00512 1426 aa18.96■□□□□ 0.63
SHKBP1-211ENST00000595945 PLIN1O60240 522 aa18.95■□□□□ 0.62
SHKBP1-211ENST00000595945 NEFLP07196 543 aa18.95■□□□□ 0.62
SHKBP1-211ENST00000595945 SLC39A6Q13433 755 aa18.95■□□□□ 0.62
SHKBP1-211ENST00000595945 MRPL50Q8N5N7 158 aaKnown RBP18.95■□□□□ 0.62
SHKBP1-211ENST00000595945 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-211ENST00000595945 SMC4Q9NTJ3 1288 aa18.95■□□□□ 0.62
SHKBP1-211ENST00000595945 BCL2L13Q9BXK5 485 aa18.94■□□□□ 0.62
SHKBP1-211ENST00000595945 GIGYF1O75420 1035 aaPredicted RBP18.93■□□□□ 0.62
SHKBP1-211ENST00000595945 PIGBQ92521 554 aa18.93■□□□□ 0.62
SHKBP1-211ENST00000595945 TMOD3Q9NYL9 352 aa18.93■□□□□ 0.62
SHKBP1-211ENST00000595945 NHSQ6T4R5 1651 aa18.92■□□□□ 0.62
SHKBP1-211ENST00000595945 FKBP8Q14318 412 aa18.92■□□□□ 0.62
SHKBP1-211ENST00000595945 IRX6P78412 446 aaPredicted RBP18.91■□□□□ 0.62
SHKBP1-211ENST00000595945 SEPT12Q8IYM1 358 aa18.91■□□□□ 0.62
SHKBP1-211ENST00000595945 TTC5Q8N0Z6 440 aa18.91■□□□□ 0.62
SHKBP1-211ENST00000595945 ZNF496Q96IT1 587 aaPredicted RBP18.91■□□□□ 0.62
SHKBP1-211ENST00000595945 KIF16BQ96L93 1317 aa18.91■□□□□ 0.62
SHKBP1-211ENST00000595945 RBM6P78332 1123 aaKnown RBP18.9■□□□□ 0.62
SHKBP1-211ENST00000595945 ERICH6BQ5W0A0 696 aa18.9■□□□□ 0.62
SHKBP1-211ENST00000595945 FMNL2Q96PY5 1086 aa18.9■□□□□ 0.62
SHKBP1-211ENST00000595945 TCERG1O14776 1098 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 PRIM1P49642 420 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 PDE3AQ14432 1141 aa18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 C20orf194Q5TEA3 1177 aa18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 CCDC30Q5VVM6 783 aa18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 CHMP4AQ9BY43 222 aa18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 NOB1Q9ULX3 412 aaKnown RBP18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 CICQ96RK0 1608 aaPredicted RBP18.89■□□□□ 0.61
SHKBP1-211ENST00000595945 A0A0G2JS52 829 aa18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 MYT1Q01538 1121 aa18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 ZKSCAN2Q63HK3 967 aa18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 ARHGAP45Q92619 1136 aa18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 FRAT1Q92837 279 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 ATG3Q9NT62 314 aa18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 RGS17Q9UGC6 210 aaPredicted RBP18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 BTAF1O14981 1849 aa18.88■□□□□ 0.61
SHKBP1-211ENST00000595945 PRAMEF22A3QJZ6 481 aa18.87■□□□□ 0.61
SHKBP1-211ENST00000595945 SNRPA1P09661 255 aaKnown RBP18.87■□□□□ 0.61
SHKBP1-211ENST00000595945 ZNF831Q5JPB2 1677 aa18.87■□□□□ 0.61
SHKBP1-211ENST00000595945 HDGFL1Q5TGJ6 251 aa18.87■□□□□ 0.61
SHKBP1-211ENST00000595945 ASAP1Q9ULH1 1129 aa18.87■□□□□ 0.61
SHKBP1-211ENST00000595945 N4BP2Q86UW6 1770 aaPredicted RBP18.86■□□□□ 0.61
SHKBP1-211ENST00000595945 TJP1Q07157 1748 aa18.86■□□□□ 0.61
SHKBP1-211ENST00000595945 IPO8O15397 1037 aaKnown RBP18.86■□□□□ 0.61
SHKBP1-211ENST00000595945 ATF7IPQ6VMQ6 1270 aa18.86■□□□□ 0.61
SHKBP1-211ENST00000595945 TNNQ9UQP3 1299 aa18.86■□□□□ 0.61
SHKBP1-211ENST00000595945 RGS12O14924 1447 aa18.85■□□□□ 0.61
SHKBP1-211ENST00000595945 TRIM27P14373 513 aa18.85■□□□□ 0.61
SHKBP1-211ENST00000595945 CANXP27824 592 aaKnown RBP18.85■□□□□ 0.61
SHKBP1-211ENST00000595945 ACSBG1Q96GR2 724 aa18.85■□□□□ 0.61
SHKBP1-211ENST00000595945 STK31Q9BXU1 1019 aa18.85■□□□□ 0.61
SHKBP1-211ENST00000595945 SLC4A2P04920 1241 aa18.84■□□□□ 0.61
SHKBP1-211ENST00000595945 MS4A1P11836 297 aa18.84■□□□□ 0.61
SHKBP1-211ENST00000595945 RLBP1P12271 317 aa18.84■□□□□ 0.61
SHKBP1-211ENST00000595945 EIF2S2P20042 333 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-211ENST00000595945 G2E3Q7L622 706 aa18.83■□□□□ 0.6
SHKBP1-211ENST00000595945 DZIP1LQ8IYY4 767 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-211ENST00000595945 VSIG10Q8N0Z9 540 aa18.83■□□□□ 0.6
SHKBP1-211ENST00000595945 NECTIN2Q92692 538 aa18.83■□□□□ 0.6
SHKBP1-211ENST00000595945 SYTL4Q96C24 671 aaPredicted RBP18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms